AT4G36920

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17400610 .. 17403469
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36920.1

Sequence Viewer

Length: 1299 bp
ATGTGGGATCTAAACGACGCACCACACCAAACACAAAGAGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGGTTGGATCTTTCTCTAATTCAAGCTCTTCAGCTGTTGTTATCGAAGATGGATCCGATGACGATGAACTTAACCGGGTCAGACCCAATAACCCACTTGTCACCCATCAGTTCTTCCCTGAGATGGATTCTAACGGCGGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACTGGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCCGCGGGTAAAGCTACCAACGTTGCCGCTGCCGTAGTGGAGCCGGCACAGCCGTTGAAAAAGAGTCGGCGTGGACCAAGATCAAGAAGTTCTCAGTATAGAGGTGTTACGTTTTACCGGCGTACCGGAAGATGGGAATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATGCAGCAGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCAATTTCAACATCGACGATTATGATGATGACTTGAAACAGATGACTAATTTAACCAAGGAAGAGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCGAAGTATAGAGGTGTCACTTTGCATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCGAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAGGATGAACCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTTGGATTAGGTCAAACCGGAATGCTTAACCATACTCCCAATTCAAACCACCAATTTCCGGGCAGCAGCAACATTGGTAGCGGAGGCGGATTCTCACTGTTTCCGGCGGCTGAGAACCACCGGTTTGATGGTCGGGCCTCGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCACAATCAGATTTTTAATTCTACTTCTACTCCTCATCAAAATTGGCTGCAGACAAATGGCTTCCAACCTCCTCTCATGAGACCTTCTTGA

Protein Analysis

432

Amino Acids

47.83

Weight (kDa)

6.79

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 131 - 179 5.3e-10 AP2 domain
AP2 PF00847 222 - 272 1e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AbsI CCTCGAGG 1 cut(s) 654
AccII CGCG 1 cut(s) 302
AciI CCGC 9 cut(s) 219, 300, 302, 324, 545, 964, 1095, 1101, 1121
AclI AACGTT 1 cut(s) 318
AclWI GGATC 7 cut(s) 15, 97, 129, 142, 288, 301, 833
AcsI RAATTY 2 cut(s) 527, 928
AcuI CTGAAG 2 cut(s) 72, 96
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 3 cut(s) 421, 621, 627
AfiI CCNNNNNNNGG 3 cut(s) 205, 429, 1072
AflIII ACRYGT 1 cut(s) 622
AgeI ACCGGT 1 cut(s) 1134
AgsI TTSAA 5 cut(s) 105, 355, 559, 586, 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
Alw26I GTCTC 1 cut(s) 1282
AlwI GGATC 7 cut(s) 15, 97, 129, 142, 288, 301, 833
Ama87I CYCGRG 3 cut(s) 243, 501, 654
AoxI GGCC 1 cut(s) 1149
ApoI RAATTY 2 cut(s) 527, 928
AsiGI ACCGGT 1 cut(s) 1134
AspS9I GGNCC 2 cut(s) 371, 1149
AsuC2I CCSGG 2 cut(s) 158, 1074
AsuHPI GGTGA 2 cut(s) 63, 175
AsuII TTCGAA 2 cut(s) 665, 941
AvaI CYCGRG 3 cut(s) 243, 501, 654
AvaII GGWCC 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 403, 436
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 4 cut(s) 603, 612, 635, 644
BccI CCATC 5 cut(s) 125, 195, 199, 423, 1136
BceAI ACGGC 5 cut(s) 232, 314, 334, 809, 829
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BcnI CCSGG 2 cut(s) 158, 1074
BcoDI GTCTC 1 cut(s) 1282
BfaI CTAG 2 cut(s) 284, 780
BfmI CTRYAG 2 cut(s) 1179, 1256
Bme1390I CCNGG 2 cut(s) 158, 1074
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 3 cut(s) 243, 501, 654
BmgT120I GGNCC 2 cut(s) 371, 1149
BmiI GGNNCC 2 cut(s) 136, 339
BmrFI CCNGG 2 cut(s) 158, 1074
BmsI GCATC 1 cut(s) 1193
Bpu10I CCTNAGC 1 cut(s) 968
Bpu14I TTCGAA 2 cut(s) 665, 941
BpuMI CCSGG 2 cut(s) 158, 1074
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 1282
BsaJI CCNNGG 5 cut(s) 242, 300, 532, 606, 765
BsaWI WCCGGW 4 cut(s) 290, 422, 1031, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 1222, 1252
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 429, 1072
Bse118I RCCGGY 3 cut(s) 340, 414, 1134
Bse1I ACTGG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 433
BseDI CCNNGG 5 cut(s) 242, 300, 532, 606, 765
BseGI GGATG 1 cut(s) 978
BseJI GATNNNNATC 1 cut(s) 433
BseLI CCNNNNNNNGG 3 cut(s) 205, 429, 1072
BseMII CTCAG 4 cut(s) 192, 404, 982, 1116
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 3 cut(s) 1191, 1230, 1269
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 1151
BshTI ACCGGT 1 cut(s) 1134
BsiHKCI CYCGRG 3 cut(s) 243, 501, 654
BsiSI CCGG 9 cut(s) 157, 291, 341, 415, 423, 1032, 1073, 1118, 1135
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 3 cut(s) 205, 429, 1072
BsmAI GTCTC 1 cut(s) 1282
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 1041
BsnI GGCC 1 cut(s) 1151
Bso31I GGTCTC 1 cut(s) 1282
BsoBI CYCGRG 3 cut(s) 243, 501, 654
Bsp119I TTCGAA 2 cut(s) 665, 941
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
BspACI CCGC 9 cut(s) 219, 300, 302, 324, 545, 964, 1095, 1101, 1121
BspANI GGCC 1 cut(s) 1151
BspCNI CTCAG 4 cut(s) 193, 403, 981, 1117
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 1284
BspLI GGNNCC 2 cut(s) 136, 339
BspMAI CTGCAG 2 cut(s) 1183, 1260
BspPI GGATC 7 cut(s) 15, 97, 129, 142, 288, 301, 833
BspQI GCTCTTC 1 cut(s) 115
BspT104I TTCGAA 2 cut(s) 665, 941
BspTNI GGTCTC 1 cut(s) 1282
BsrFI RCCGGY 3 cut(s) 340, 414, 1134
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 3 cut(s) 340, 414, 1134
BssECI CCNNGG 5 cut(s) 242, 300, 532, 606, 765
BssMI GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 452, 1113
Bst6I CTCTTC 3 cut(s) 48, 115, 606
BstACI GRCGYC 1 cut(s) 822
BstBAI YACGTR 1 cut(s) 625
BstBI TTCGAA 2 cut(s) 665, 941
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 6 cut(s) 201, 390, 469, 727, 968, 1125
BstDSI CCRYGG 2 cut(s) 300, 532
BstF5I GGATG 1 cut(s) 978
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 8 cut(s) 10, 92, 137, 283, 296, 380, 841, 904
BstMAI GTCTC 1 cut(s) 1282
BstMBI GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
BstMWI GCNNNNNNNGC 6 cut(s) 308, 346, 494, 503, 639, 782
BstSCI CCNGG 2 cut(s) 156, 1072
BstSFI CTRYAG 2 cut(s) 1179, 1256
BstUI CGCG 1 cut(s) 302
BstX2I RGATCY 4 cut(s) 7, 89, 134, 280
BstYI RGATCY 4 cut(s) 7, 89, 134, 280
BsuRI GGCC 1 cut(s) 1151
BtgI CCRYGG 2 cut(s) 300, 532
BtsCI GGATG 1 cut(s) 978
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 250, 483, 1109
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 1284
Cfr10I RCCGGY 3 cut(s) 340, 414, 1134
Cfr13I GGNCC 2 cut(s) 371, 1149
Cfr42I CCGCGG 1 cut(s) 303
CseI GACGC 2 cut(s) 26, 830
Csp6I GTAC 3 cut(s) 420, 620, 626
CspAI ACCGGT 1 cut(s) 1134
CviAII CATG 2 cut(s) 491, 1285
CviQI GTAC 3 cut(s) 420, 620, 626
DdeI CTNAG 6 cut(s) 201, 390, 469, 727, 968, 1125
DpnI GATC 8 cut(s) 9, 91, 136, 282, 295, 379, 840, 903
DpnII GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
Eam1104I CTCTTC 3 cut(s) 48, 115, 606
EarI CTCTTC 3 cut(s) 48, 115, 606
EciI GGCGGA 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 1282
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 72, 96
Eco88I CYCGRG 3 cut(s) 243, 501, 654
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 2 cut(s) 494, 1288
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 490, 1284
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 508
FokI GGATG 1 cut(s) 985
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 2 cut(s) 284, 780
HaeIII GGCC 1 cut(s) 1151
HapII CCGG 9 cut(s) 157, 291, 341, 415, 423, 1032, 1073, 1118, 1135
HgaI GACGC 2 cut(s) 26, 830
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 2 cut(s) 494, 1288
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HinfI GANTC 9 cut(s) 47, 209, 361, 434, 872, 883, 992, 1104, 1194
HpaII CCGG 9 cut(s) 157, 291, 341, 415, 423, 1032, 1073, 1118, 1135
HphI GGTGA 2 cut(s) 63, 175
Hpy166II GTNNAC 5 cut(s) 80, 371, 466, 622, 1170
Hpy188I TCNGA 6 cut(s) 52, 139, 164, 280, 843, 1218
Hpy188III TCNNGA 6 cut(s) 381, 956, 970, 1191, 1285, 1296
Hpy8I GTNNAC 5 cut(s) 80, 371, 466, 622, 1170
Hpy99I CGWCG 3 cut(s) 20, 569, 1159
HpyCH4III ACNGT 2 cut(s) 452, 1113
HpyCH4IV ACGT 3 cut(s) 318, 407, 624
HpyCH4V TGCA 5 cut(s) 494, 688, 800, 1181, 1258
HpyF10VI GCNNNNNNNGC 6 cut(s) 308, 346, 494, 503, 639, 782
HpyF3I CTNAG 6 cut(s) 201, 390, 469, 727, 968, 1125
HpySE526I ACGT 3 cut(s) 318, 407, 624
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 2 cut(s) 494, 1288
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 337
LweI GCATC 1 cut(s) 1193
MaeI CTAG 2 cut(s) 284, 780
MaeII ACGT 3 cut(s) 318, 407, 624
MaeIII GTNAC 5 cut(s) 181, 403, 679, 809, 826
MalI GATC 8 cut(s) 9, 91, 136, 282, 295, 379, 840, 903
MboI GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
MboII GAAGA 9 cut(s) 53, 56, 60, 65, 102, 140, 187, 438, 623
MflI RGATCY 4 cut(s) 7, 89, 134, 280
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 2 cut(s) 370, 881
MmeI TCCRAC 3 cut(s) 67, 258, 1297
MroNI GCCGGC 1 cut(s) 340
MseI TTAA 6 cut(s) 153, 264, 525, 602, 1041, 1224
MslI CAYNNNNRTG 2 cut(s) 693, 1005
MspA1I CMGCKG 3 cut(s) 116, 302, 326
MspI CCGG 9 cut(s) 157, 291, 341, 415, 423, 1032, 1073, 1118, 1135
MspR9I CCNGG 2 cut(s) 158, 1074
Mva1269I GAATGC 1 cut(s) 1041
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 6 cut(s) 308, 346, 494, 503, 639, 782
NaeI GCCGGC 1 cut(s) 342
NciI CCSGG 2 cut(s) 158, 1074
NdeI CATATG 1 cut(s) 508
NdeII GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
NgoMIV GCCGGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 494, 1288
NlaIV GGNNCC 2 cut(s) 136, 339
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 3 cut(s) 181, 679, 826
NspV TTCGAA 2 cut(s) 665, 941
PaeR7I CTCGAG 2 cut(s) 501, 654
PagI TCATGA 1 cut(s) 1284
PciSI GCTCTTC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PctI GAATGC 1 cut(s) 1041
PdiI GCCGGC 1 cut(s) 342
PfeI GAWTC 7 cut(s) 47, 209, 434, 883, 992, 1104, 1194
PinAI ACCGGT 1 cut(s) 1134
PleI GAGTC 2 cut(s) 369, 880
PpsI GAGTC 2 cut(s) 369, 880
Ppu21I YACGTR 1 cut(s) 625
Psp1406I AACGTT 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 136, 339
PspPI GGNCC 2 cut(s) 371, 1149
PspXI VCTCGAGB 2 cut(s) 501, 654
PstI CTGCAG 2 cut(s) 1183, 1260
PsuI RGATCY 4 cut(s) 7, 89, 134, 280
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 421, 621, 627
RsaNI GTAC 3 cut(s) 420, 620, 626
RseI CAYNNNNRTG 2 cut(s) 693, 1005
SacII CCGCGG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 6 cut(s) 153, 264, 525, 602, 1041, 1224
Sau3AI GATC 8 cut(s) 7, 89, 134, 280, 293, 377, 838, 901
Sau96I GGNCC 2 cut(s) 371, 1149
SchI GAGTC 2 cut(s) 370, 881
ScrFI CCNGG 2 cut(s) 158, 1074
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 1193
SfcI CTRYAG 2 cut(s) 1179, 1256
Sfr274I CTCGAG 2 cut(s) 501, 654
Sfr303I CCGCGG 1 cut(s) 303
SfuI TTCGAA 2 cut(s) 665, 941
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 2 cut(s) 501, 654
SmiMI CAYNNNNRTG 2 cut(s) 693, 1005
SmlI CTYRAG 2 cut(s) 501, 654
SmoI CTYRAG 2 cut(s) 501, 654
SsiI CCGC 9 cut(s) 219, 300, 302, 324, 545, 964, 1095, 1101, 1121
SspMI CTAG 2 cut(s) 284, 780
StyD4I CCNGG 2 cut(s) 156, 1072
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 452, 1113
TaiI ACGT 3 cut(s) 321, 410, 627
TauI GCSGC 3 cut(s) 326, 967, 1124
TfiI GAWTC 7 cut(s) 47, 209, 434, 883, 992, 1104, 1194
Tru1I TTAA 6 cut(s) 153, 264, 525, 602, 1041, 1224
Tru9I TTAA 6 cut(s) 153, 264, 525, 602, 1041, 1224
TscAI CASTG 3 cut(s) 257, 490, 1116
TseFI GTSAC 3 cut(s) 181, 679, 826
Tsp45I GTSAC 3 cut(s) 181, 679, 826
TspDTI ATGAA 3 cut(s) 162, 989, 1023
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 3 cut(s) 257, 490, 1116
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 527, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 1139
XhoI CTCGAG 2 cut(s) 501, 654
XspI CTAG 2 cut(s) 284, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.