Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Reverse (-)

11506326 .. 11511037

Gene Structure 4712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0133300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCGTCGTCGTCGTCGCCGCCGCAGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTTGCCGCTATGCATCCCCTCGACGTCGTCCGCACCAGGTTTCAAGTCAACGACGGCCGAATCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATTGGAGGGACTGAGAGGACTCTATGCAGGTTTCTCTCCTGCTGTGATTGGCTCCACTGTTTCCTGGGGTTTATATTTCTTCTTCTATGGAAGAGCCAAACAGAGGTATTCTAAAAACGGGGATGAGAAGCTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCAGAAGCTGGTGCTCTGGTTTCTTTGTGCACAAATCCTATTTGGCTTGTAAAAACAAGACTGCAGCTTCAGACTCCTCTCCATCAAACACGCCCTTATTCTGGTTTTTATGATGCCTTGAGAACCATAATGAGAGAGGAAGGATTTGCTGCACTGTATAAGGGTCTTGGTCCTAGTCTTTTTCTGCAGGTCTCCCATGGTGCTATTCAATTCACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAGTCTAAACAAGGCACAAATAATTCTGGAAGTTCGGATACTGTATTGAATTCACTTGACTATGCAGCCTTAGGGGCATCATCGAAAGTCGCTGCCATTCTTCTATCATATCCATTCCAGGTTATACGATCTCGATTGCAGCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTAAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATAAACATTATTTGAGGTTGAAAATGTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

312

Amino Acids

34.64

Weight (kDa)

9.81

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	12 - 102	6.3e-21	Mitochondrial carrier protein
Mito_carr	PF00153	107 - 199	1.1e-23	Mitochondrial carrier protein
Mito_carr	PF00153	218 - 302	3.7e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	2 cut(s)	209, 529
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	5 cut(s)	20, 23, 48, 81, 106
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	652, 765
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	2 cut(s)	54, 99
AfiI	CCNNNNNNNGG	2 cut(s)	294, 452
AgsI	TTSAA	6 cut(s)	119, 560, 604, 652, 882, 925
AhdI	GACNNNNNGTC	1 cut(s)	604
AjnI	CCWGG	4 cut(s)	110, 254, 328, 720
AluBI	AGCT	4 cut(s)	322, 359, 418, 786
AluI	AGCT	4 cut(s)	322, 359, 418, 786
Alw21I	GWGCWC	2 cut(s)	367, 383
Alw26I	GTCTC	1 cut(s)	547
Alw44I	GTGCAC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	7 cut(s)	350, 415, 500, 668, 695, 742, 875
ApoI	RAATTY	2 cut(s)	652, 765
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	625, 657
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	367, 383
BbvI	GCAGC	7 cut(s)	362, 427, 487, 680, 682, 754, 862
BccI	CCATC	1 cut(s)	441
BceAI	ACGGC	3 cut(s)	41, 145, 180
BciT130I	CCWGG	4 cut(s)	112, 256, 330, 722
BciVI	GTATCC	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	525, 753
BfmI	CTRYAG	4 cut(s)	348, 413, 536, 835
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	209, 529
BfuI	GTATCC	1 cut(s)	634
BglI	GCCNNNNNGGC	2 cut(s)	28, 677
Bme1390I	CCNGG	4 cut(s)	112, 256, 330, 722
Bme18I	GGWCC	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	55, 244
BmrFI	CCNGG	4 cut(s)	112, 256, 330, 722
BmsI	GCATC	3 cut(s)	97, 454, 689
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	490
BsaHI	GRCGYC	2 cut(s)	54, 99
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	255, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 452
Bse118I	RCCGGY	2 cut(s)	50, 62
Bse21I	CCTNAGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	4 cut(s)	112, 256, 330, 722
BseDI	CCNNGG	2 cut(s)	255, 547
BseGI	GGATG	2 cut(s)	88, 319
BseLI	CCNNNNNNNGG	2 cut(s)	294, 452
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	194, 314, 750
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	383
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	7 cut(s)	362, 427, 487, 680, 682, 754, 862
BsgI	GTGCAG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	367, 383
BsiSI	CCGG	2 cut(s)	51, 63
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	294, 452
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	367, 383
Bsp143I	GATC	1 cut(s)	731
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	5 cut(s)	20, 23, 48, 81, 106
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	195, 315, 751
BspLI	GGNNCC	2 cut(s)	55, 244
BspMAI	CTGCAG	3 cut(s)	352, 417, 540
BspMI	ACCTGC	2 cut(s)	209, 529
BspQI	GCTCTTC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	50, 62
BssAI	RCCGGY	2 cut(s)	50, 62
BssECI	CCNNGG	2 cut(s)	255, 547
BssMI	GATC	1 cut(s)	731
BssNI	GRCGYC	2 cut(s)	54, 99
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	4 cut(s)	112, 256, 330, 722
Bst4CI	ACNGT	5 cut(s)	76, 250, 507, 646, 813
Bst6I	CTCTTC	1 cut(s)	277
BstACI	GRCGYC	2 cut(s)	54, 99
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	52, 64, 788
BstDEI	CTNAG	4 cut(s)	203, 323, 673, 759
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	88, 319
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	734
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	731
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 68, 77, 350, 356, 677
BstNI	CCWGG	4 cut(s)	112, 256, 330, 722
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	4 cut(s)	110, 254, 328, 720
BstSFI	CTRYAG	4 cut(s)	348, 413, 536, 835
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	7 cut(s)	362, 427, 487, 680, 682, 754, 862
BstV2I	GAAGAC	1 cut(s)	326
BstZI	CGGCCG	1 cut(s)	130
Bsu36I	CCTNAGG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	88, 319
BtsI	GCAGTG	3 cut(s)	32, 38, 564
BtsIMutI	CAGTG	5 cut(s)	32, 38, 246, 503, 564
BveI	ACCTGC	2 cut(s)	209, 529
Cac8I	GCNNGC	3 cut(s)	52, 64, 788
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	50, 62
Cfr13I	GGNCC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	110
CviAII	CATG	2 cut(s)	548, 791
DdeI	CTNAG	4 cut(s)	203, 323, 673, 759
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
DriI	GACNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	277
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	521
Eco52I	CGGCCG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	673
EcoRI	GAATTC	2 cut(s)	652, 765
EcoRII	CCWGG	4 cut(s)	110, 254, 328, 720
EcoT14I	CCWWGG	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	551, 794
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	547, 790
FauNDI	CATATG	1 cut(s)	571
FokI	GGATG	2 cut(s)	75, 326
FspBI	CTAG	2 cut(s)	525, 753
GlaI	GCGC	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	51, 63
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	54, 99
Hin1II	CATG	2 cut(s)	551, 794
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	2 cut(s)	124, 598
HindII	GTYRAC	2 cut(s)	124, 598
HinfI	GANTC	4 cut(s)	135, 210, 325, 424
HpaII	CCGG	2 cut(s)	51, 63
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	124, 381, 598
Hpy188I	TCNGA	4 cut(s)	150, 423, 640, 760
Hpy188III	TCNNGA	2 cut(s)	630, 735
Hpy8I	GTNNAC	3 cut(s)	124, 381, 598
Hpy99I	CGWCG	8 cut(s)	10, 13, 16, 19, 62, 101, 104, 131
HpyAV	CCTTC	2 cut(s)	485, 866
HpyCH4III	ACNGT	5 cut(s)	76, 250, 507, 646, 813
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 68, 77, 350, 356, 677
HpyF3I	CTNAG	4 cut(s)	203, 323, 673, 759
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	54, 99
Hsp92II	CATG	2 cut(s)	551, 794
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	2 cut(s)	50, 62
KroNI	GCCGGC	2 cut(s)	52, 64
Kzo9I	GATC	1 cut(s)	731
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	7 cut(s)	362, 427, 487, 680, 682, 754, 862
LweI	GCATC	3 cut(s)	97, 454, 689
MabI	ACCWGGT	1 cut(s)	110
MaeI	CTAG	2 cut(s)	525, 753
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	8 cut(s)	137, 169, 262, 265, 294, 326, 587, 695
MhlI	GDGCHC	2 cut(s)	367, 383
MluCI	AATT	5 cut(s)	560, 625, 652, 765, 843
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	204, 334, 418
MmeI	TCCRAC	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	90
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 62
MspI	CCGG	2 cut(s)	51, 63
MspR9I	CCNGG	4 cut(s)	112, 256, 330, 722
MvaI	CCWGG	4 cut(s)	112, 256, 330, 722
MwoI	GCNNNNNNNGC	6 cut(s)	28, 68, 77, 350, 356, 677
NaeI	GCCGGC	2 cut(s)	52, 64
NarI	GGCGCC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	547
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	1 cut(s)	731
NgoMIV	GCCGGC	2 cut(s)	50, 62
NlaIII	CATG	2 cut(s)	551, 794
NlaIV	GGNNCC	2 cut(s)	55, 244
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	794
PciSI	GCTCTTC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	2 cut(s)	52, 64
PfeI	GAWTC	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	101
PleI	GAGTC	3 cut(s)	204, 333, 418
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	3 cut(s)	204, 333, 418
Psp6I	CCWGG	4 cut(s)	110, 254, 328, 720
PspGI	CCWGG	4 cut(s)	110, 254, 328, 720
PspN4I	GGNNCC	2 cut(s)	55, 244
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	3 cut(s)	352, 417, 540
PstNI	CAGNNNCTG	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	3 cut(s)	204, 334, 418
ScrFI	CCNGG	4 cut(s)	112, 256, 330, 722
SduI	GDGCHC	2 cut(s)	367, 383
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	3 cut(s)	97, 454, 689
SfcI	CTRYAG	4 cut(s)	348, 413, 536, 835
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	560, 625, 652, 765, 843
SsiI	CCGC	5 cut(s)	20, 23, 48, 81, 106
SspDI	GGCGCC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	525, 753
StyD4I	CCNGG	4 cut(s)	110, 254, 328, 720
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	5 cut(s)	76, 250, 507, 646, 813
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	5 cut(s)	96, 190, 686, 736, 826
TasI	AATT	5 cut(s)	560, 625, 652, 765, 843
TauI	GCSGC	3 cut(s)	22, 25, 83
TfiI	GAWTC	1 cut(s)	135
TscAI	CASTG	5 cut(s)	32, 38, 253, 510, 571
TseI	GCWGC	7 cut(s)	350, 415, 500, 668, 695, 742, 875
TspDTI	ATGAA	3 cut(s)	326, 588, 915
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	5 cut(s)	32, 38, 253, 510, 571
Tth111I	GACNNNGTC	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	652, 765
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	525, 753
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.