Prupe.6G231900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003785
Physical Location & Seq
Reverse (-)
23449546 .. 23452337
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G231900.5

Sequence Viewer

Length: 1035 bp
ATGAAAGTTGGCAGCGAATTGGTGTACGGAGGACCTCGAGCCACCGCTCTGCCCTCTGTTCTTCTTCGGCACAGTAGAGCTGGACCACGCTGCTCTTACTCCTCTGCCACTCCTGACCATGTGTCTTTCATTAAGGAGGTGGCAGCAACTCAGCCTCCACAGCATTTGAGCCAGTTGCTGACAATGCTCAAGACAAAAGGTGAATCTATTATTTCTCCAGGAGCCAAGGAAGGGCTAATCCCCCTTGCCATACCACTAGCAAAAAATAGCTCAGGTGCTGTAACTGCACTTCTTCGGTGGCCTACAGCTCCTTCAGGTATGGACATGCCAGTGGTTGAGGTCAGGAAACATGGGGTGTGGCTTTTAGCCAAGAATGTGGACCAATTAATTCACAGAATCCTAGTTGAAGAAGATGCTAAAAACTCTGGAGAAAGCAATGATGAGCTATTTCGTGCTTCTGCTGATGTTGGGGAGAAACTTTATAAAAAGGGTGACTTTGCCAAGTCGCAGATTTCAAAACTAGATATTTACCTTTTAAGAAAAGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACCATGTATCGGCTTTGGTGACGGGAGAATTCTATACAAAGAAGGAGCATTTTCCTGGATTTGCACGGCCTTATGTATTCAATGCTGAGGTTTTGCTGAAGGTTGGGCGTACTGTTGAAGCAAAAGATGCTGCTAGGGGAGCTCTTAAATCACCATGGTGGACTCTGGGTTGCAGCTACCAGGAAGTTGCTGATATAGCACAATGGGAGGACGAGCAAATTGAGTACATTAAGGAGAAGGTGACCGACGAGGGAAGGCAAGCAGATCTTAAAAAGGGAAAGGCCCCAGCTCAGGTTGCATTGGATGAAGCAGCTTTTTTGTTGGATCTAGCTTCTATTGAAGGGACTTGGGATGACCATGTGGAGCAGGTTGCTGATCGTTACAGAGAGGCTGGCCTCACTGATTTTGCACGATTTGTACAATACAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.2

Weight (kDa)

6.18

Isoelectric Point (pI)

24.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 958
AccBSI CCGCTC 1 cut(s) 47
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 933
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 297, 719
AfaI GTAC 4 cut(s) 26, 712, 827, 1020
AfiI CCNNNNNNNGG 3 cut(s) 231, 610, 892
AgsI TTSAA 5 cut(s) 407, 516, 682, 719, 941
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 3 cut(s) 217, 655, 780
AleI CACNNNNGTG 1 cut(s) 757
AluBI AGCT 9 cut(s) 80, 270, 308, 445, 743, 777, 890, 914, 932
AluI AGCT 9 cut(s) 80, 270, 308, 445, 743, 777, 890, 914, 932
Alw21I GWGCWC 1 cut(s) 745
AlwI GGATC 1 cut(s) 933
AlwNI CAGNNNCTG 2 cut(s) 178, 278
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 4 cut(s) 299, 668, 882, 994
ApeKI GCWGC 6 cut(s) 12, 90, 143, 731, 774, 911
ApoI RAATTY 1 cut(s) 629
AseI ATTAAT 1 cut(s) 386
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 5 cut(s) 32, 83, 379, 601, 883
AsuHPI GGTGA 5 cut(s) 212, 503, 631, 744, 853
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 4 cut(s) 32, 83, 379, 601
BanII GRGCYC 1 cut(s) 745
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
Bbv12I GWGCWC 1 cut(s) 745
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 6 cut(s) 24, 77, 155, 718, 786, 923
BceAI ACGGC 1 cut(s) 683
BciT130I CCWGG 3 cut(s) 219, 657, 782
BfaI CTAG 5 cut(s) 257, 401, 521, 735, 929
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 958
BglII AGATCT 1 cut(s) 865
BisI GCNGC 6 cut(s) 13, 91, 144, 732, 775, 912
BlsI GCNGC 6 cut(s) 14, 92, 145, 733, 776, 913
Bme1390I CCNGG 3 cut(s) 219, 657, 782
Bme18I GGWCC 4 cut(s) 32, 83, 379, 601
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 5 cut(s) 32, 83, 379, 601, 883
BmiI GGNNCC 3 cut(s) 223, 602, 885
BmrFI CCNGG 3 cut(s) 219, 657, 782
BmsI GCATC 2 cut(s) 403, 718
BpmI CTGGAG 2 cut(s) 201, 447
Bpu10I CCTNAGC 3 cut(s) 271, 687, 891
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 225, 755
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 610, 892
Bse1I ACTGG 2 cut(s) 172, 329
Bse3DI GCAATG 1 cut(s) 442
BseBI CCWGG 3 cut(s) 219, 657, 782
BseDI CCNNGG 2 cut(s) 225, 755
BseGI GGATG 2 cut(s) 910, 958
BseLI CCNNNNNNNGG 3 cut(s) 231, 610, 892
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 4 cut(s) 164, 285, 678, 905
BseNI ACTGG 2 cut(s) 172, 329
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 6 cut(s) 24, 77, 155, 718, 786, 923
BseYI CCCAGC 1 cut(s) 886
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 4 cut(s) 301, 670, 884, 996
BsiHKAI GWGCWC 1 cut(s) 745
BsiHKCI CYCGRG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 614, 958
BslI CCNNNNNNNGG 3 cut(s) 231, 610, 892
BsmFI GGGAC 2 cut(s) 614, 958
BsnI GGCC 4 cut(s) 301, 670, 884, 996
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 1018
Bsp143I GATC 3 cut(s) 865, 925, 976
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 1 cut(s) 45
BspANI GGCC 4 cut(s) 301, 670, 884, 996
BspCNI CTCAG 4 cut(s) 163, 284, 679, 904
BspLI GGNNCC 3 cut(s) 223, 602, 885
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 1 cut(s) 933
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 1018
BsrI ACTGG 2 cut(s) 172, 329
BssECI CCNNGG 2 cut(s) 225, 755
BssMI GATC 3 cut(s) 865, 925, 976
BssT1I CCWWGG 2 cut(s) 225, 755
Bst2UI CCWGG 3 cut(s) 219, 657, 782
Bst4CI ACNGT 2 cut(s) 74, 715
BstAPI GCANNNNNTGC 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 1018
BstC8I GCNNGC 2 cut(s) 861, 994
BstDEI CTNAG 4 cut(s) 150, 271, 687, 891
BstDSI CCRYGG 1 cut(s) 755
BstEII GGTNACC 1 cut(s) 841
BstF5I GGATG 2 cut(s) 910, 958
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 3 cut(s) 868, 928, 979
BstMBI GATC 3 cut(s) 865, 925, 976
BstMWI GCNNNNNNNGC 7 cut(s) 160, 184, 284, 728, 740, 797, 896
BstNI CCWGG 3 cut(s) 219, 657, 782
BstNSI RCATGY 1 cut(s) 328
BstPI GGTNACC 1 cut(s) 841
BstSCI CCNGG 3 cut(s) 217, 655, 780
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 6 cut(s) 24, 77, 155, 718, 786, 923
BstX2I RGATCY 2 cut(s) 865, 925
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 2 cut(s) 865, 925
BsuRI GGCC 4 cut(s) 301, 670, 884, 996
BtgI CCRYGG 1 cut(s) 755
BtsCI GGATG 2 cut(s) 910, 958
BtsIMutI CAGTG 2 cut(s) 336, 999
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 2 cut(s) 861, 994
CaiI CAGNNNCTG 2 cut(s) 178, 278
CfoI GCGC 1 cut(s) 573
Cfr13I GGNCC 5 cut(s) 32, 83, 379, 601, 883
Csp6I GTAC 4 cut(s) 25, 711, 826, 1019
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 6 cut(s) 119, 325, 350, 605, 756, 959
CviQI GTAC 4 cut(s) 25, 711, 826, 1019
DdeI CTNAG 4 cut(s) 150, 271, 687, 891
DpnI GATC 3 cut(s) 867, 927, 978
DpnII GATC 3 cut(s) 865, 925, 976
DriI GACNNNNNGTC 1 cut(s) 121
Eam1105I GACNNNNNGTC 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 743
Eco130I CCWWGG 2 cut(s) 225, 755
Eco24I GRGCYC 1 cut(s) 745
Eco47I GGWCC 4 cut(s) 32, 83, 379, 601
Eco53kI GAGCTC 1 cut(s) 743
Eco57I CTGAAG 2 cut(s) 297, 719
Eco88I CYCGRG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 743
EcoO109I RGGNCCY 2 cut(s) 32, 883
EcoO65I GGTNACC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 3 cut(s) 217, 655, 780
EcoT14I CCWWGG 2 cut(s) 225, 755
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 225, 755
FaeI CATG 6 cut(s) 122, 328, 353, 608, 759, 962
FalI AAGNNNNNCTT 4 cut(s) 479, 511, 852, 884
FaqI GGGAC 2 cut(s) 614, 958
FatI CATG 6 cut(s) 118, 324, 349, 604, 755, 958
Fnu4HI GCNGC 6 cut(s) 13, 91, 144, 732, 775, 912
FokI GGATG 2 cut(s) 917, 965
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 6 cut(s) 13, 91, 144, 732, 775, 912
FspBI CTAG 5 cut(s) 257, 401, 521, 735, 929
GlaI GCGC 1 cut(s) 572
GluI GCNGC 6 cut(s) 13, 91, 144, 732, 775, 912
GsaI CCCAGC 1 cut(s) 890
GsuI CTGGAG 2 cut(s) 201, 447
HaeIII GGCC 4 cut(s) 301, 670, 884, 996
HhaI GCGC 1 cut(s) 573
Hin1II CATG 6 cut(s) 122, 328, 353, 608, 759, 962
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 3 cut(s) 203, 396, 763
HphI GGTGA 5 cut(s) 212, 503, 631, 744, 853
Hpy166II GTNNAC 3 cut(s) 25, 379, 762
Hpy188III TCNNGA 5 cut(s) 113, 190, 343, 426, 557
Hpy8I GTNNAC 3 cut(s) 25, 379, 762
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 8 cut(s) 224, 321, 590, 637, 694, 832, 849, 935
HpyCH4III ACNGT 2 cut(s) 74, 715
HpyCH4V TGCA 5 cut(s) 287, 665, 774, 899, 1010
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 184, 284, 728, 740, 797, 896
HpyF3I CTNAG 4 cut(s) 150, 271, 687, 891
Hsp92II CATG 6 cut(s) 122, 328, 353, 608, 759, 962
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 3 cut(s) 865, 925, 976
LmnI GCTCC 6 cut(s) 221, 313, 568, 646, 740, 964
Lsp1109I GCAGC 6 cut(s) 24, 77, 155, 718, 786, 923
LweI GCATC 2 cut(s) 403, 718
MaeI CTAG 5 cut(s) 257, 401, 521, 735, 929
MaeIII GTNAC 5 cut(s) 280, 491, 619, 841, 980
MalI GATC 3 cut(s) 867, 927, 978
MbiI CCGCTC 1 cut(s) 47
MboI GATC 3 cut(s) 865, 925, 976
MboII GAAGA 5 cut(s) 53, 56, 284, 419, 422
MflI RGATCY 2 cut(s) 865, 925
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 5 cut(s) 17, 383, 387, 629, 819
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 1 cut(s) 903
MseI TTAA 6 cut(s) 132, 386, 536, 747, 831, 870
MslI CAYNNNNRTG 2 cut(s) 329, 757
MspR9I CCNGG 3 cut(s) 219, 657, 782
MvaI CCWGG 3 cut(s) 219, 657, 782
MwoI GCNNNNNNNGC 7 cut(s) 160, 184, 284, 728, 740, 797, 896
NcoI CCATGG 1 cut(s) 755
NdeII GATC 3 cut(s) 865, 925, 976
NlaIII CATG 6 cut(s) 122, 328, 353, 608, 759, 962
NlaIV GGNNCC 3 cut(s) 223, 602, 885
NmuCI GTSAC 3 cut(s) 491, 619, 841
NspI RCATGY 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 2 cut(s) 203, 396
PfoI TCCNGGA 2 cut(s) 217, 655
PkrI GCNGC 6 cut(s) 14, 92, 145, 733, 776, 913
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 386
PsiI TTATAA 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 745
Psp5II RGGWCCY 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 217, 655, 780
PspEI GGTNACC 1 cut(s) 841
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 3 cut(s) 217, 655, 780
PspN4I GGNNCC 3 cut(s) 223, 602, 885
PspPI GGNCC 5 cut(s) 32, 83, 379, 601, 883
PspPPI RGGWCCY 1 cut(s) 32
PspXI VCTCGAGB 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 178, 278
PsuI RGATCY 2 cut(s) 865, 925
RsaI GTAC 4 cut(s) 26, 712, 827, 1020
RsaNI GTAC 4 cut(s) 25, 711, 826, 1019
RseI CAYNNNNRTG 2 cut(s) 329, 757
SacI GAGCTC 1 cut(s) 745
SaqAI TTAA 6 cut(s) 132, 386, 536, 747, 831, 870
SatI GCNGC 6 cut(s) 13, 91, 144, 732, 775, 912
Sau3AI GATC 3 cut(s) 865, 925, 976
Sau96I GGNCC 5 cut(s) 32, 83, 379, 601, 883
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 219, 657, 782
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 2 cut(s) 403, 718
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 4 cut(s) 32, 83, 379, 601
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 329, 757
SmlI CTYRAG 2 cut(s) 36, 188
SmoI CTYRAG 2 cut(s) 36, 188
Sse9I AATT 5 cut(s) 17, 383, 387, 629, 819
SsiI CCGC 1 cut(s) 45
SspMI CTAG 5 cut(s) 257, 401, 521, 735, 929
SstI GAGCTC 1 cut(s) 745
StyD4I CCNGG 3 cut(s) 217, 655, 780
StyI CCWWGG 2 cut(s) 225, 755
TaaI ACNGT 2 cut(s) 74, 715
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 860
TasI AATT 5 cut(s) 17, 383, 387, 629, 819
TatI WGTACW 2 cut(s) 825, 1018
TfiI GAWTC 2 cut(s) 203, 396
Tru1I TTAA 6 cut(s) 132, 386, 536, 747, 831, 870
Tru9I TTAA 6 cut(s) 132, 386, 536, 747, 831, 870
TscAI CASTG 2 cut(s) 336, 1006
TseFI GTSAC 3 cut(s) 491, 619, 841
TseI GCWGC 6 cut(s) 12, 90, 143, 731, 774, 911
Tsp45I GTSAC 3 cut(s) 491, 619, 841
TspDTI ATGAA 3 cut(s) 17, 118, 921
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 336, 1006
VpaK11BI GGWCC 4 cut(s) 32, 83, 379, 601
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 1 cut(s) 629
XceI RCATGY 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 5 cut(s) 257, 401, 521, 735, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.