AT2G23370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003785
Physical Location & Seq
Reverse (-)
9952867 .. 9955149
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23370.2

Sequence Viewer

Length: 1023 bp
ATGCATCGCGGCGCGGCGGTTTTCGGACGGAAACGTAGACTGATACTTCTCCATGGCAGCAGAAACTTCGCCAGATCCTTTTGCTCTTCTTCTTCACTATCTGAACATGAATGTTTCATTAAGGATATAGCAAAAGCTCAGCCTCCTAAGCATCTGATGCAGCTGCTGAATATATTCACAGCTAGAGGTAAATCCATAGTTTCTCCTGGTGCCAAGCAAGGCTTGTTACCTCTTACTATTCCGTTGGTGAAAATGAGCCCGGGTTCTTCAATTGCTCTATTACGGTGGCCAACAGCTCCTTCTAGTATGGAGATGCCTGTGGTGGAAGTTCAGAAACATGGGGTTTGGTTTCTAGCTAATAATGTTGATCAGTTCATTCACAGAATATTGGTGGAAGAAGATGTTTCCAAACCCGAAGAATGCAGCCAAGAAATCTTCAATGCTGCTGGTGAAGCTGGGAAGAAACTTTACAGTAAGGGTGACTTTGCCAGTTCAAGACTGATGGATTTAGATGCCTATCTTTTAAGAAAGGTTGGATTGTTTCCAGATTCTCTTGAACGAAAAGTTATTCGGCATATCGAGAATGGAGACCATGTTTCAGCTTTGGTGGCTACCGAGTTTTATACAAAGAGAGGGAACTTTCCCGGATTTGCCCGGCCATTCGCTTTCAACGCAAAAGTTTTACTGAAACTTGGGCGTAACTTAGAAGCGAAAGACGCAGCTAGGGGTGCTTTGAAATCTTCGTGGTGGACCTTAGGATGCAGATATGAGGAAATTGCTCAAATAGCAGAGTGGGGAGAAGAGCAAATTGCGCAGTATAAGGAGAGAGTTACAGGAGAAGGAAAACAACGGGATATAGACAGGGGAAAGCCAATGGCTCAGGCATCTTTGGACGAGGCTGCGTTCTTACTGAATCTAGCGTCACTTGAAGGGACATGGGACGAATCACTGGAACGGGTTGCTCAGTGCTACAAGGAAGCTGGACTTAACGACATCGCCAAGTTTGTTCTGTACAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.04

Weight (kDa)

8.96

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 37
AccII CGCG 2 cut(s) 9, 14
AciI CCGC 3 cut(s) 9, 14, 17
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 2 cut(s) 287, 656
AfaI GTAC 1 cut(s) 1013
AgsI TTSAA 7 cut(s) 270, 439, 495, 557, 670, 736, 929
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 9 cut(s) 137, 163, 182, 296, 356, 455, 602, 722, 980
AluI AGCT 9 cut(s) 137, 163, 182, 296, 356, 455, 602, 722, 980
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 2 cut(s) 287, 656
ApeKI GCWGC 7 cut(s) 57, 160, 163, 423, 443, 719, 899
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 2 cut(s) 14, 814
AspS9I GGNCC 1 cut(s) 750
AsuC2I CCSGG 4 cut(s) 260, 261, 645, 655
AsuHPI GGTGA 3 cut(s) 259, 461, 491
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 750
AxyI CCTNAGG 1 cut(s) 754
BalI TGGCCA 1 cut(s) 289
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 452, 484
BbvI GCAGC 7 cut(s) 69, 150, 172, 430, 435, 731, 886
BccI CCATC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 4 cut(s) 260, 261, 645, 655
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 5 cut(s) 183, 303, 353, 723, 917
BisI GCNGC 9 cut(s) 10, 15, 58, 161, 164, 424, 444, 720, 900
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 9 cut(s) 11, 16, 59, 162, 165, 425, 445, 721, 901
Bme1390I CCNGG 5 cut(s) 207, 260, 261, 645, 655
Bme18I GGWCC 1 cut(s) 750
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 5 cut(s) 207, 260, 261, 645, 655
BmsI GCATC 7 cut(s) 13, 147, 160, 303, 502, 749, 893
Bpu10I CCTNAGC 2 cut(s) 147, 879
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 4 cut(s) 260, 261, 645, 655
BsaBI GATNNNNATC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 52, 259
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bse1I ACTGG 2 cut(s) 489, 954
Bse21I CCTNAGG 1 cut(s) 754
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 52, 259
BseGI GGATG 1 cut(s) 764
BseJI GATNNNNATC 1 cut(s) 516
BseMII CTCAG 3 cut(s) 152, 893, 977
BseNI ACTGG 2 cut(s) 489, 954
BseXI GCAGC 7 cut(s) 69, 150, 172, 430, 435, 731, 886
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 2 cut(s) 9, 14
BshFI GGCC 2 cut(s) 289, 658
BshNI GGYRCC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 3 cut(s) 260, 645, 655
BslFI GGGAC 2 cut(s) 946, 953
BsmAI GTCTC 1 cut(s) 582
BsmFI GGGAC 2 cut(s) 946, 953
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 289, 658
Bso31I GGTCTC 1 cut(s) 582
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 2 cut(s) 74, 367
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 3 cut(s) 9, 14, 17
BspANI GGCC 2 cut(s) 289, 658
BspCNI CTCAG 3 cut(s) 151, 892, 976
BspFNI CGCG 2 cut(s) 9, 14
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 69
BspQI GCTCTTC 2 cut(s) 91, 795
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 582
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 489, 954
BssECI CCNNGG 2 cut(s) 52, 259
BssMI GATC 2 cut(s) 74, 367
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 285, 473
Bst6I CTCTTC 2 cut(s) 91, 795
BstAPI GCANNNNNTGC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 1011
BstDEI CTNAG 6 cut(s) 138, 147, 703, 754, 879, 963
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 764
BstFNI CGCG 2 cut(s) 9, 14
BstHHI GCGC 2 cut(s) 14, 814
BstKTI GATC 2 cut(s) 77, 370
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 2 cut(s) 74, 367
BstMWI GCNNNNNNNGC 9 cut(s) 148, 157, 452, 608, 671, 716, 728, 785, 811
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 5 cut(s) 205, 258, 259, 643, 653
BstUI CGCG 2 cut(s) 9, 14
BstV1I GCAGC 7 cut(s) 69, 150, 172, 430, 435, 731, 886
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 754
BsuRI GGCC 2 cut(s) 289, 658
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 979
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 947, 971
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 14, 814
Cfr13I GGNCC 1 cut(s) 750
Cfr9I CCCGGG 1 cut(s) 259
CseI GACGC 2 cut(s) 725, 909
Csp6I GTAC 1 cut(s) 1012
CviAII CATG 5 cut(s) 53, 107, 338, 593, 936
CviQI GTAC 1 cut(s) 1012
DdeI CTNAG 6 cut(s) 138, 147, 703, 754, 879, 963
DpnI GATC 2 cut(s) 76, 369
DpnII GATC 2 cut(s) 74, 367
EaeI YGGCCR 2 cut(s) 287, 656
Eam1104I CTCTTC 2 cut(s) 91, 795
EarI CTCTTC 2 cut(s) 91, 795
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 5 cut(s) 56, 110, 341, 596, 939
FalI AAGNNNNNCTT 6 cut(s) 206, 238, 467, 499, 969, 1001
FaqI GGGAC 2 cut(s) 946, 953
FatI CATG 5 cut(s) 52, 106, 337, 592, 935
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 9 cut(s) 10, 15, 58, 161, 164, 424, 444, 720, 900
FokI GGATG 1 cut(s) 771
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 9 cut(s) 10, 15, 58, 161, 164, 424, 444, 720, 900
FspBI CTAG 5 cut(s) 183, 303, 353, 723, 917
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 2 cut(s) 13, 813
GluI GCNGC 9 cut(s) 10, 15, 58, 161, 164, 424, 444, 720, 900
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 2 cut(s) 289, 658
HapII CCGG 3 cut(s) 260, 645, 655
HgaI GACGC 2 cut(s) 725, 909
HhaI GCGC 2 cut(s) 14, 814
Hin1II CATG 5 cut(s) 56, 110, 341, 596, 939
Hin6I GCGC 2 cut(s) 12, 812
HinP1I GCGC 2 cut(s) 12, 812
HinfI GANTC 3 cut(s) 548, 913, 944
HpaII CCGG 3 cut(s) 260, 645, 655
HphI GGTGA 3 cut(s) 259, 461, 491
Hpy166II GTNNAC 2 cut(s) 38, 750
Hpy188I TCNGA 4 cut(s) 26, 103, 156, 333
Hpy188III TCNNGA 4 cut(s) 495, 545, 554, 580
Hpy8I GTNNAC 2 cut(s) 38, 750
HpyAV CCTTC 3 cut(s) 309, 833, 923
HpyCH4III ACNGT 2 cut(s) 285, 473
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 4, 160, 423, 762
HpyF10VI GCNNNNNNNGC 9 cut(s) 148, 157, 452, 608, 671, 716, 728, 785, 811
HpyF3I CTNAG 6 cut(s) 138, 147, 703, 754, 879, 963
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 5 cut(s) 56, 110, 341, 596, 939
HspAI GCGC 2 cut(s) 12, 812
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 74, 367
LguI GCTCTTC 2 cut(s) 91, 795
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 7 cut(s) 69, 150, 172, 430, 435, 731, 886
LweI GCATC 7 cut(s) 13, 147, 160, 303, 502, 749, 893
MaeI CTAG 5 cut(s) 183, 303, 353, 723, 917
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 5 cut(s) 225, 479, 698, 829, 921
MalI GATC 2 cut(s) 76, 369
MboI GATC 2 cut(s) 74, 367
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 1 cut(s) 289
MluCI AATT 3 cut(s) 270, 774, 807
MluNI TGGCCA 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 6 cut(s) 153, 179, 240, 626, 763, 889
Mox20I TGGCCA 1 cut(s) 289
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 289
MseI TTAA 3 cut(s) 120, 524, 987
Msp20I TGGCCA 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 3 cut(s) 260, 645, 655
MspR9I CCNGG 5 cut(s) 207, 260, 261, 645, 655
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 2 cut(s) 9, 14
MwoI GCNNNNNNNGC 9 cut(s) 148, 157, 452, 608, 671, 716, 728, 785, 811
NciI CCSGG 4 cut(s) 260, 261, 645, 655
NcoI CCATGG 1 cut(s) 52
NdeII GATC 2 cut(s) 74, 367
NlaIII CATG 5 cut(s) 56, 110, 341, 596, 939
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 479, 921
NsbI TGCGCA 1 cut(s) 813
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 2 cut(s) 91, 795
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 548, 913, 944
PfoI TCCNGGA 1 cut(s) 643
PkrI GCNGC 9 cut(s) 11, 16, 59, 162, 165, 425, 445, 721, 901
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
SapI GCTCTTC 2 cut(s) 91, 795
SaqAI TTAA 3 cut(s) 120, 524, 987
SatI GCNGC 9 cut(s) 10, 15, 58, 161, 164, 424, 444, 720, 900
Sau3AI GATC 2 cut(s) 74, 367
Sau96I GGNCC 1 cut(s) 750
ScrFI CCNGG 5 cut(s) 207, 260, 261, 645, 655
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 7 cut(s) 13, 147, 160, 303, 502, 749, 893
SinI GGWCC 1 cut(s) 750
SmaI CCCGGG 1 cut(s) 261
Sse9I AATT 3 cut(s) 270, 774, 807
SsiI CCGC 3 cut(s) 9, 14, 17
SspI AATATT 1 cut(s) 387
SspMI CTAG 5 cut(s) 183, 303, 353, 723, 917
StyD4I CCNGG 5 cut(s) 205, 258, 259, 643, 653
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 285, 473
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 579
TasI AATT 3 cut(s) 270, 774, 807
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 2 cut(s) 12, 17
TfiI GAWTC 3 cut(s) 548, 913, 944
Tru1I TTAA 3 cut(s) 120, 524, 987
Tru9I TTAA 3 cut(s) 120, 524, 987
TscAI CASTG 2 cut(s) 954, 971
TseFI GTSAC 2 cut(s) 479, 921
TseI GCWGC 7 cut(s) 57, 160, 163, 423, 443, 719, 899
Tsp45I GTSAC 2 cut(s) 479, 921
TspDTI ATGAA 3 cut(s) 106, 123, 364
TspGWI ACGGA 2 cut(s) 43, 231
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 2 cut(s) 954, 971
VpaK11BI GGWCC 1 cut(s) 750
XmaI CCCGGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 5 cut(s) 183, 303, 353, 723, 917
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.