Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16326883 .. 16330224

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTTCGATTTCGATGCACATAACTCCCTCTACTGCTCTCCCTATACGCCATTTCAGAGCTAGAGTCTCTTGTTGCTCTTCTGGGCATGTATCATTTATCAAAGATGTTGCTGCCACTGAACCTCCAATGCATCTTCATCACTTACTCAAAGTGCTTCAAACAAGAGGTGAGACAATCATATCTCCTGGAGCTAAGCAGGGACTGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCGTCAGGCTCTGTTACTGCGCTTTTGAGATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGAGGAGTGGAGTCAGGCTTATAGCTAGAAATGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATGCACAAGAGTTGACAGAACTATATCGTGCTTCGGGAGAGGCAGGTGAAAAACTTTACGAAAAGGGTGCTTTTGCTGAATCTGAAATTGACAATCTCGATGTCTATGTTTTGAAAAAGGTTGGACTGTTTCCAGATTTGTTGGAGCGGAAAGTATTACGGCATTTTGATGAAGGAGATCATGTTTCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGACGACCTTTTGTATATTATGCAAACATACTACAGAAGGTAGGGCGGAATGTAGAAGCAAAAGATGCGGCTAGGGTAGCATTGAGATCACCGTGGTGGACATTAGGATGTCCGTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTCATAAGGGAAAAAGTGAGTGATGAAGGTCGTTTTGAAGATTTGCATAAAGGCAAAGCTCCAATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATCGAAGGAACTTGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATCTCTAATTTCGTTTTGTACACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.91

Weight (kDa)

5.65

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	529
AciI	CCGC	5 cut(s)	224, 529, 667, 689, 869
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	235, 587, 782
AfaI	GTAC	1 cut(s)	983
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	161, 377, 496, 821
AjnI	CCWGG	3 cut(s)	187, 283, 613
AleI	CACNNNNGTG	1 cut(s)	715
AluBI	AGCT	6 cut(s)	62, 194, 338, 572, 842, 950
AluI	AGCT	6 cut(s)	62, 194, 338, 572, 842, 950
Alw26I	GTCTC	2 cut(s)	73, 167
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	2 cut(s)	205, 248
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	3 cut(s)	235, 587, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	909
AsuHPI	GGTGA	5 cut(s)	182, 353, 440, 589, 702
AsuII	TTCGAA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	909
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	557
BcgI	CGANNNNNNTGC	3 cut(s)	32, 431, 465
BciT130I	CCWGG	3 cut(s)	189, 285, 615
BcoDI	GTCTC	2 cut(s)	73, 167
BfaI	CTAG	5 cut(s)	63, 339, 371, 693, 750
BfmI	CTRYAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	114, 690, 870
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	3 cut(s)	115, 691, 871
Bme1390I	CCNGG	3 cut(s)	189, 285, 615
Bme18I	GGWCC	1 cut(s)	909
BmgT120I	GGNCC	1 cut(s)	909
BmrFI	CCNGG	3 cut(s)	189, 285, 615
BmsI	GCATC	4 cut(s)	6, 142, 373, 676
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	713
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	298
BseBI	CCWGG	3 cut(s)	189, 285, 615
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	2 cut(s)	734, 868
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseRI	GAGGAG	2 cut(s)	331, 755
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	299, 364
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	73, 167
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	271
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	4 cut(s)	207, 559, 707, 777
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	5 cut(s)	224, 529, 667, 689, 869
BspANI	GGCC	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	981
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	4 cut(s)	207, 559, 707, 777
Bst2UI	CCWGG	3 cut(s)	189, 285, 615
Bst4CI	ACNGT	2 cut(s)	510, 714
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	981
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	734, 868
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	210, 562, 710, 780
BstMAI	GTCTC	2 cut(s)	73, 167
BstMBI	GATC	4 cut(s)	207, 559, 707, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	686, 698, 755
BstNI	CCWGG	3 cut(s)	189, 285, 615
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	187, 283, 613
BstSFI	CTRYAG	1 cut(s)	653
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	734, 868
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	416
CaiI	CAGNNNCTG	2 cut(s)	205, 248
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	909
Csp6I	GTAC	1 cut(s)	982
CviAII	CATG	2 cut(s)	89, 563
CviQI	GTAC	1 cut(s)	982
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	4 cut(s)	209, 561, 709, 779
DpnII	GATC	4 cut(s)	207, 559, 707, 777
DraI	TTTAAA	1 cut(s)	921
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	909
EcoRI	GAATTC	2 cut(s)	235, 782
EcoRII	CCWGG	3 cut(s)	187, 283, 613
EcoT22I	ATGCAT	1 cut(s)	135
FaeI	CATG	2 cut(s)	92, 566
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	2 cut(s)	88, 562
Fnu4HI	GCNGC	3 cut(s)	114, 690, 870
FokI	GGATG	2 cut(s)	741, 875
Fsp4HI	GCNGC	3 cut(s)	114, 690, 870
FspBI	CTAG	5 cut(s)	63, 339, 371, 693, 750
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	114, 690, 870
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	2 cut(s)	299, 364
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	92, 566
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	5 cut(s)	66, 324, 367, 461, 914
HpaII	CCGG	2 cut(s)	299, 364
HphI	GGTGA	5 cut(s)	182, 353, 440, 589, 702
Hpy166II	GTNNAC	3 cut(s)	396, 720, 984
Hpy188I	TCNGA	3 cut(s)	59, 466, 913
Hpy188III	TCNNGA	3 cut(s)	417, 479, 515
Hpy8I	GTNNAC	3 cut(s)	396, 720, 984
HpyAV	CCTTC	4 cut(s)	548, 652, 803, 893
HpyCH4III	ACNGT	2 cut(s)	510, 714
HpyCH4V	TGCA	5 cut(s)	19, 133, 386, 644, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	686, 698, 755
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	92, 566
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	207, 559, 707, 777
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	4 cut(s)	191, 283, 526, 847
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	4 cut(s)	6, 142, 373, 676
MaeI	CTAG	5 cut(s)	63, 339, 371, 693, 750
MaeIII	GTNAC	2 cut(s)	250, 577
MalI	GATC	4 cut(s)	209, 561, 709, 779
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	4 cut(s)	207, 559, 707, 777
MboII	GAAGA	7 cut(s)	72, 128, 244, 389, 392, 779, 833
MluCI	AATT	5 cut(s)	235, 468, 587, 782, 970
MlyI	GAGTC	2 cut(s)	75, 333
MmeI	TCCRAC	3 cut(s)	484, 504, 840
Mph1103I	ATGCAT	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	920
MslI	CAYNNNNRTG	3 cut(s)	549, 715, 727
MspI	CCGG	2 cut(s)	299, 364
MspR9I	CCNGG	3 cut(s)	189, 285, 615
MvaI	CCWGG	3 cut(s)	189, 285, 615
MwoI	GCNNNNNNNGC	3 cut(s)	686, 698, 755
NdeII	GATC	4 cut(s)	207, 559, 707, 777
NlaIII	CATG	2 cut(s)	92, 566
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 777
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	367, 461, 914
PflMI	CCANNNNNTGG	1 cut(s)	620
PfoI	TCCNGGA	2 cut(s)	187, 613
PkrI	GCNGC	3 cut(s)	115, 691, 871
PleI	GAGTC	2 cut(s)	74, 332
PpsI	GAGTC	2 cut(s)	74, 332
Psp6I	CCWGG	3 cut(s)	187, 283, 613
PspGI	CCWGG	3 cut(s)	187, 283, 613
PspPI	GGNCC	1 cut(s)	909
PstNI	CAGNNNCTG	2 cut(s)	205, 248
RsaI	GTAC	1 cut(s)	983
RsaNI	GTAC	1 cut(s)	982
RseI	CAYNNNNRTG	3 cut(s)	549, 715, 727
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	920
SatI	GCNGC	3 cut(s)	114, 690, 870
Sau3AI	GATC	4 cut(s)	207, 559, 707, 777
Sau96I	GGNCC	1 cut(s)	909
SchI	GAGTC	2 cut(s)	75, 333
ScrFI	CCNGG	3 cut(s)	189, 285, 615
SfaNI	GCATC	4 cut(s)	6, 142, 373, 676
SfcI	CTRYAG	1 cut(s)	653
SfuI	TTCGAA	1 cut(s)	230
SinI	GGWCC	1 cut(s)	909
SmiMI	CAYNNNNRTG	3 cut(s)	549, 715, 727
Sse9I	AATT	5 cut(s)	235, 468, 587, 782, 970
SsiI	CCGC	5 cut(s)	224, 529, 667, 689, 869
SspMI	CTAG	5 cut(s)	63, 339, 371, 693, 750
StyD4I	CCNGG	3 cut(s)	187, 283, 613
TaaI	ACNGT	2 cut(s)	510, 714
TaqI	TCGA	6 cut(s)	8, 14, 230, 480, 780, 897
TasI	AATT	5 cut(s)	235, 468, 587, 782, 970
TatI	WGTACW	1 cut(s)	981
TauI	GCSGC	2 cut(s)	692, 872
TfiI	GAWTC	3 cut(s)	367, 461, 914
Tru1I	TTAA	1 cut(s)	920
Tru9I	TTAA	1 cut(s)	920
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	5 cut(s)	128, 366, 567, 775, 822
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	909
XapI	RAATTY	3 cut(s)	235, 587, 782
XceI	RCATGY	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	5 cut(s)	63, 339, 371, 693, 750
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.