Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007100.1

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Reverse (-)

42651 .. 44053

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007100.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggatatgccggtagttgaggtcaagaagcatggggtgtggcttttagctaaaaatgtagaccaacttatccatagaattctagttgaagaagatgctaaacactctggggaaagcaatgaagagatatttcatgcatctggtgatgctggggagaaactttataaaaagggtgactttgccaagtcagagatttcaaaactagatatctacattttaagaaaagttggtttatttccagatgtcttggagcgcaaagtgaagtggcattttgaggaaggggaccaagtctcagctttggtaacgggagaattctacacaaagaaggagcattttcctggatttgcacggccttttgtattcaatgctgaggttttgctgaaggtcggtcgtacagttgaagctaaagatgctgcaaggggagctttaaaatcaccctggtggactctggggtgcaaataccaggaagttgctgatatagcacaatgggaggatgagcaaattgagtacattaaggagagggtgagtgaggagggaaggcaagcagatctgaaaaaggggaaagcccctgcacaggtcgcattggatgaagcagcttttttattggatttagcttctgttgaagagagttgggatgaatatgtggagcaggttgctaattgttacaaagaaggtggcctcccagatattgcaaaatttgtgctatgcagagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.02

Weight (kDa)

5.1

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	60
AcsI	RAATTY	3 cut(s)	78, 311, 695
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	394, 509
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	5 cut(s)	89, 198, 364, 401, 623
AjnI	CCWGG	3 cut(s)	337, 437, 462
AleI	CACNNNNGTG	1 cut(s)	439
AluBI	AGCT	6 cut(s)	50, 296, 404, 425, 596, 614
AluI	AGCT	6 cut(s)	50, 296, 404, 425, 596, 614
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	2 cut(s)	350, 676
ApeKI	GCWGC	2 cut(s)	413, 593
ApoI	RAATTY	3 cut(s)	78, 311, 695
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	4 cut(s)	155, 185, 426, 535
AvaII	GGWCC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	400, 605
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	3 cut(s)	339, 439, 464
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	83, 203
BfuAI	ACCTGC	1 cut(s)	640
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	2 cut(s)	414, 594
BlsI	GCNGC	2 cut(s)	415, 595
Bme1390I	CCNGG	3 cut(s)	339, 439, 464
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	339, 439, 464
BmsI	GCATC	4 cut(s)	85, 136, 146, 400
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse118I	RCCGGY	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	339, 439, 464
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	499, 592, 640
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	306, 360
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	400, 605
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	352, 678
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	352, 678
Bsp143I	GATC	1 cut(s)	547
BspANI	GGCC	2 cut(s)	352, 678
BspCNI	CTCAG	2 cut(s)	305, 361
BspLI	GGNNCC	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	1 cut(s)	547
Bst2UI	CCWGG	3 cut(s)	339, 439, 464
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	2 cut(s)	117, 618
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	292, 369
BstF5I	GGATG	3 cut(s)	499, 592, 640
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	547
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 422, 479, 578
BstNI	CCWGG	3 cut(s)	339, 439, 464
BstSCI	CCNGG	3 cut(s)	337, 437, 462
BstV1I	GCAGC	2 cut(s)	400, 605
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	352, 678
BtsCI	GGATG	3 cut(s)	499, 592, 640
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	393, 508
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	2 cut(s)	32, 134
CviQI	GTAC	2 cut(s)	393, 508
DdeI	CTNAG	2 cut(s)	292, 369
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	117, 618
EarI	CTCTTC	2 cut(s)	117, 618
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	401
EcoRI	GAATTC	2 cut(s)	78, 311
EcoRII	CCWGG	3 cut(s)	337, 437, 462
EcoRV	GATATC	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	2 cut(s)	35, 137
FaiI	YATR	8 cut(s)	8, 33, 75, 135, 165, 479, 642, 706
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 409, 441
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	31, 133
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	414, 594
FokI	GGATG	3 cut(s)	506, 599, 647
Fsp4HI	GCNGC	2 cut(s)	414, 594
FspBI	CTAG	2 cut(s)	83, 203
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	414, 594
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	352, 678
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	35, 137
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	4 cut(s)	155, 185, 426, 535
Hpy166II	GTNNAC	2 cut(s)	61, 444
Hpy188I	TCNGA	2 cut(s)	190, 552
Hpy188III	TCNNGA	2 cut(s)	25, 239
Hpy8I	GTNNAC	2 cut(s)	61, 444
HpyAV	CCTTC	5 cut(s)	272, 319, 376, 531, 665
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	7 cut(s)	137, 347, 416, 456, 572, 692, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 422, 479, 578
HpyF3I	CTNAG	2 cut(s)	292, 369
Hsp92II	CATG	2 cut(s)	35, 137
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	4 cut(s)	250, 328, 422, 646
Lsp1109I	GCAGC	2 cut(s)	400, 605
LweI	GCATC	4 cut(s)	85, 136, 146, 400
MaeI	CTAG	2 cut(s)	83, 203
MaeIII	GTNAC	3 cut(s)	173, 301, 662
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	4 cut(s)	101, 104, 134, 635
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	5 cut(s)	78, 311, 501, 658, 695
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	8 cut(s)	13, 268, 364, 484, 513, 523, 526, 689
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	3 cut(s)	218, 428, 513
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	339, 439, 464
MvaI	CCWGG	3 cut(s)	339, 439, 464
MwoI	GCNNNNNNNGC	4 cut(s)	410, 422, 479, 578
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	2 cut(s)	35, 137
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	439
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	415, 595
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	337, 437, 462
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	337, 437, 462
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	547
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	394, 509
RsaNI	GTAC	2 cut(s)	393, 508
RseI	CAYNNNNRTG	1 cut(s)	439
SaqAI	TTAA	3 cut(s)	218, 428, 513
SatI	GCNGC	2 cut(s)	414, 594
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	339, 439, 464
SfaNI	GCATC	4 cut(s)	85, 136, 146, 400
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	439
Sse9I	AATT	5 cut(s)	78, 311, 501, 658, 695
SspMI	CTAG	2 cut(s)	83, 203
StyD4I	CCNGG	3 cut(s)	337, 437, 462
TaaI	ACNGT	1 cut(s)	397
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	78, 311, 501, 658, 695
TatI	WGTACW	1 cut(s)	507
Tru1I	TTAA	3 cut(s)	218, 428, 513
Tru9I	TTAA	3 cut(s)	218, 428, 513
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	413, 593
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	4 cut(s)	122, 135, 603, 651
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	3 cut(s)	78, 311, 695
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	2 cut(s)	83, 203
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.