Rh2AG184300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003785
Physical Location & Seq
Forward (+)
17972744 .. 17975439
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG184300.1

Sequence Viewer

Length: 768 bp
ATGAAAGTTGGCGGCGGAGTAGTGTACGGACGTCCTCGAGCCACTGCTTTTCCCACTGTGCTTCTTGGCCATGGCAGAGCTAGTCCACGCTGTTCTTATTCCTCTTCCAGTTCTGACCATGTGTCTTTCATTAAGGAGGTGGCAGGAACTCAGCCTCCACAGCATTTGAGCCAGCTACTGAAAATGCTCAAGACCAGAGGTGATTCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCCGTACCACTTTCAAAAAATAGCTCAGGTGCTGTAACTGCATTGCTTCGGTGGCCTACAGCTCCACCAGGTATGGATATGCCGGTAGTTGAGGTCAAGAAGCATGGGGTGTGGCTTTTAGCTAAAAATGTAGACCAACTTATCCATAGAATTCTAGTTGAAGAAGATGCTAAACACTCTGGGGAAAGCAATGAAGAGATATTTCATGCATCTGGTGATGCTGGGGAGAAACTTTATAAGAAGGGTGACTTTGCCAAGTCAGAGATTTCAAAACTAGATATCTACATTTTAAGAAAAGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACCAAGTCTCAGCTTTGGTAACGGGAGAATTCTACACAAAGAAGGAGCATTTTCCTGGATTTGCACGGCCTTTTGTATTCAATGCTGAGGTTTTGCTGAAGTTCGTAGGACACTTCACCAGGTCGGTCGTACAGTTGAAGCTAAAGATGCTGCTAGGGGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

9.46

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AatII GACGTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 378
AciI CCGC 2 cut(s) 12, 15
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 396, 629
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 3 cut(s) 26, 252, 732
AgsI TTSAA 5 cut(s) 261, 407, 516, 682, 739
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 4 cut(s) 217, 313, 655, 719
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 8 cut(s) 80, 175, 270, 308, 368, 614, 742, 763
AluI AGCT 8 cut(s) 80, 175, 270, 308, 368, 614, 742, 763
Alw26I GTCTC 1 cut(s) 613
AlwNI CAGNNNCTG 2 cut(s) 178, 278
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 67, 299, 668
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 2 cut(s) 396, 629
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 4 cut(s) 212, 473, 503, 709
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 738
BceAI ACGGC 2 cut(s) 233, 683
BciT130I CCWGG 4 cut(s) 219, 315, 657, 721
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 4 cut(s) 81, 401, 521, 755
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 13, 752
BlsI GCNGC 2 cut(s) 14, 753
Bme1390I CCNGG 4 cut(s) 219, 315, 657, 721
Bme18I GGWCC 1 cut(s) 601
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 1 cut(s) 602
BmrFI CCNGG 4 cut(s) 219, 315, 657, 721
BmsI GCATC 4 cut(s) 403, 454, 464, 738
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 271, 687
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 287, 442
BseBI CCWGG 4 cut(s) 219, 315, 657, 721
BseDI CCNNGG 1 cut(s) 70
BseMI GCAATG 2 cut(s) 287, 442
BseMII CTCAG 4 cut(s) 164, 285, 624, 678
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 738
BseYI CCCAGC 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 729
BshFI GGCC 3 cut(s) 69, 301, 670
BsiEI CGRYCG 1 cut(s) 729
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 3 cut(s) 69, 301, 670
BsoBI CYCGRG 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 12, 15
BspANI GGCC 3 cut(s) 69, 301, 670
BspCNI CTCAG 4 cut(s) 163, 284, 623, 679
BspLI GGNNCC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 287, 442
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 4 cut(s) 219, 315, 657, 721
Bst4CI ACNGT 2 cut(s) 58, 735
Bst6I CTCTTC 2 cut(s) 109, 435
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 150, 271, 610, 687
BstDSI CCRYGG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 573
BstMAI GTCTC 1 cut(s) 613
BstMCI CGRYCG 1 cut(s) 729
BstMWI GCNNNNNNNGC 5 cut(s) 160, 284, 298, 748, 760
BstNI CCWGG 4 cut(s) 219, 315, 657, 721
BstSCI CCNGG 4 cut(s) 217, 313, 655, 719
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 738
BsuRI GGCC 3 cut(s) 69, 301, 670
BtgI CCRYGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 54
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 2 cut(s) 178, 278
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 601
CsiI ACCWGGT 2 cut(s) 313, 719
Csp6I GTAC 3 cut(s) 25, 251, 731
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 4 cut(s) 71, 119, 350, 452
CviQI GTAC 3 cut(s) 25, 251, 731
DdeI CTNAG 4 cut(s) 150, 271, 610, 687
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 109, 435
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 109, 435
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 70
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 396, 629
EcoRII CCWGG 4 cut(s) 217, 313, 655, 719
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 74, 122, 353, 455
FaiI YATR 8 cut(s) 72, 120, 320, 326, 351, 393, 453, 483
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 70, 118, 349, 451
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 13, 752
Fsp4HI GCNGC 2 cut(s) 13, 752
FspBI CTAG 4 cut(s) 81, 401, 521, 755
GlaI GCGC 1 cut(s) 572
GluI GCNGC 2 cut(s) 13, 752
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 69, 301, 670
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 4 cut(s) 74, 122, 353, 455
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 329
HphI GGTGA 4 cut(s) 212, 473, 503, 709
Hpy166II GTNNAC 3 cut(s) 25, 86, 379
Hpy188I TCNGA 2 cut(s) 115, 508
Hpy188III TCNNGA 3 cut(s) 190, 343, 557
Hpy8I GTNNAC 3 cut(s) 25, 86, 379
HpyAV CCTTC 3 cut(s) 481, 590, 637
HpyCH4III ACNGT 2 cut(s) 58, 735
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 287, 455, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 284, 298, 748, 760
HpyF3I CTNAG 4 cut(s) 150, 271, 610, 687
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 4 cut(s) 74, 122, 353, 455
HspAI GCGC 1 cut(s) 571
LmnI GCTCC 5 cut(s) 221, 313, 568, 646, 760
Lsp1109I GCAGC 1 cut(s) 738
LweI GCATC 4 cut(s) 403, 454, 464, 738
MabI ACCWGGT 2 cut(s) 313, 719
MaeI CTAG 4 cut(s) 81, 401, 521, 755
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 3 cut(s) 280, 491, 619
MboII GAAGA 4 cut(s) 96, 419, 422, 452
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 2 cut(s) 396, 629
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 8 cut(s) 45, 112, 130, 165, 191, 331, 586, 682
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 457
MscI TGGCCA 1 cut(s) 69
MseI TTAA 4 cut(s) 132, 236, 536, 766
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 4 cut(s) 219, 315, 657, 721
MvaI CCWGG 4 cut(s) 219, 315, 657, 721
MwoI GCNNNNNNNGC 5 cut(s) 160, 284, 298, 748, 760
NcoI CCATGG 1 cut(s) 70
NlaIII CATG 4 cut(s) 74, 122, 353, 455
NlaIV GGNNCC 1 cut(s) 602
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 203
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 2 cut(s) 217, 655
PkrI GCNGC 2 cut(s) 14, 753
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 4 cut(s) 217, 313, 655, 719
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 4 cut(s) 217, 313, 655, 719
PspN4I GGNNCC 1 cut(s) 602
PspPI GGNCC 1 cut(s) 601
PspXI VCTCGAGB 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 178, 278
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 3 cut(s) 26, 252, 732
RsaNI GTAC 3 cut(s) 25, 251, 731
SaqAI TTAA 4 cut(s) 132, 236, 536, 766
SatI GCNGC 2 cut(s) 13, 752
Sau96I GGNCC 1 cut(s) 601
ScrFI CCNGG 4 cut(s) 219, 315, 657, 721
SexAI ACCWGGT 2 cut(s) 313, 719
SfaNI GCATC 4 cut(s) 403, 454, 464, 738
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 601
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 36, 188
SmoI CTYRAG 2 cut(s) 36, 188
Sse9I AATT 2 cut(s) 396, 629
SsiI CCGC 2 cut(s) 12, 15
SspMI CTAG 4 cut(s) 81, 401, 521, 755
StyD4I CCNGG 4 cut(s) 217, 313, 655, 719
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 58, 735
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 715
TasI AATT 2 cut(s) 396, 629
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 4 cut(s) 132, 236, 536, 766
Tru9I TTAA 4 cut(s) 132, 236, 536, 766
TscAI CASTG 2 cut(s) 49, 61
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 4 cut(s) 17, 118, 440, 453
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 49, 61
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 2 cut(s) 396, 629
XhoI CTCGAG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 4 cut(s) 81, 401, 521, 755
ZraI GACGTC 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.