Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Forward (+)

15453964 .. 15456725

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1175800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAAGTTTGCGGCGGATTGGTGTGCGGAGGCTCTCGCGCCACCGCTCTGCCCACTGTGCTTCTTCGGCACGGCAGAGCTCGGCCGCGCTGCTCTTATTCCTTTGTCACGCAAGACCATGTGTCTTTCATCAAGGAGGTTGCCTCCACTCAGCCGCCGCAGCATTTGAGCCAGTTGCTGAGAATGCTCAAGACAAGAGGTGAATCTATTGTTTCTCCGGGAGCCAAGGAAGGGCTAATCCCCCTTGCCATACCACTTGCGAGAAACAGCTCAGGTGCTGTAACTGCACTGCTCCGGTGGCCTACAGCTCCGGCAGGTATGGACATGCCAGTCGTTGAGGTCAGGAAGCATGGGGTGTGGCTTTTAGCCAAGAATGTGGACCAATTTATTCACAGAATCCTAGCTGAAGAAGATGCTAAGAACTCTGAAGAAAGAAATGAAGAGCTCTTTCAAGCTTCTGCTGATGTTGGGGAGAAACTTTATACGAAGGGTGACTTTGCAAAGTCGCAGATTTCAAAACTAGATTTCTACCTTTTAAGAAAAGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACTATGTTTCAGCCTTGGTGACGGGAGAGTTCTATACGAAGAAGGAACATTTTCCTGGTTTTGCACGGCCTTACGTATTCAATGCTGAGGTTTTGCTGAAGGTCGGGCGTACTGTTGAAGCTAAAGACGCCGCTAGGGGAGCTCTAAAATCACCATGGTGGACACTGGGTTGCAGCTATCAGGAAGTTGCTAATATAGCGCAATGGGAGGACGAGCAAATAGAGTACATTAAGGAGAAGGTGACAGAGGAGGGAAGGCAGGCGGATCTTAAAAAGGGAAAGGCCCCTGCGCAGGTTGCATTGGATGAAGCAGCATTTTTGCTGGATCTAGCTTCCATTGACGGGACTTGGGATGACTATGTCTGGCAGGTTGCTGATCGATATAAAGAGGCGGGCCTCCAGGATATTGCAGGATTCGTATTATACAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.47

Weight (kDa)

6.42

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc16I	TGCGCA	1 cut(s)	891
Acc36I	ACCTGC	3 cut(s)	305, 883, 958
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	2 cut(s)	39, 88
AclWI	GGATC	2 cut(s)	873, 933
AcoI	YGGCCR	1 cut(s)	83
AcuI	CTGAAG	3 cut(s)	426, 447, 719
AcyI	GRCGYC	1 cut(s)	729
AfaI	GTAC	2 cut(s)	712, 827
AfiI	CCNNNNNNNGG	3 cut(s)	231, 892, 942
AgsI	TTSAA	4 cut(s)	452, 516, 682, 719
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	655, 999
AleI	CACNNNNGTG	1 cut(s)	757
Alw21I	GWGCWC	3 cut(s)	82, 447, 745
AlwI	GGATC	2 cut(s)	873, 933
AlwNI	CAGNNNCTG	2 cut(s)	178, 278
AoxI	GGCC	5 cut(s)	83, 299, 668, 882, 994
ApeKI	GCWGC	4 cut(s)	90, 160, 774, 911
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	5 cut(s)	41, 90, 573, 802, 892
AspS9I	GGNCC	3 cut(s)	379, 883, 994
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	212, 503, 631, 744, 853
AvaII	GGWCC	1 cut(s)	379
BanII	GRGCYC	3 cut(s)	82, 447, 745
Bbv12I	GWGCWC	3 cut(s)	82, 447, 745
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	77, 172, 786, 923
BceAI	ACGGC	2 cut(s)	88, 683
BciT130I	CCWGG	2 cut(s)	657, 1001
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	4 cut(s)	401, 521, 735, 929
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	3 cut(s)	305, 883, 958
BisI	GCNGC	9 cut(s)	13, 86, 91, 155, 158, 161, 732, 775, 912
BlsI	GCNGC	9 cut(s)	14, 87, 92, 156, 159, 162, 733, 776, 913
Bme1390I	CCNGG	3 cut(s)	219, 657, 1001
Bme18I	GGWCC	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	379, 883, 994
BmiI	GGNNCC	2 cut(s)	223, 885
BmrFI	CCNGG	3 cut(s)	219, 657, 1001
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	776
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	983
Bpu10I	CCTNAGC	2 cut(s)	271, 687
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	979
BsaAI	YACGTR	1 cut(s)	676
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	225, 615, 755
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 892, 942
Bse1I	ACTGG	3 cut(s)	172, 329, 771
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	2 cut(s)	657, 1001
BseCI	ATCGAT	1 cut(s)	979
BseDI	CCNNGG	3 cut(s)	225, 615, 755
BseGI	GGATG	2 cut(s)	910, 958
BseLI	CCNNNNNNNGG	3 cut(s)	231, 892, 942
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	4 cut(s)	164, 170, 285, 678
BseNI	ACTGG	3 cut(s)	172, 329, 771
BseRI	GAGGAG	1 cut(s)	863
BseX3I	CGGCCG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	77, 172, 786, 923
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	39, 88
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	5 cut(s)	85, 301, 670, 884, 996
BshVI	ATCGAT	1 cut(s)	979
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	3 cut(s)	82, 447, 745
BsiSI	CCGG	3 cut(s)	218, 295, 311
BslFI	GGGAC	2 cut(s)	614, 958
BslI	CCNNNNNNNGG	3 cut(s)	231, 892, 942
BsmFI	GGGAC	2 cut(s)	614, 958
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	5 cut(s)	85, 301, 670, 884, 996
Bsp1286I	GDGCHC	3 cut(s)	82, 447, 745
Bsp143I	GATC	3 cut(s)	865, 925, 976
Bsp19I	CCATGG	1 cut(s)	755
BspANI	GGCC	5 cut(s)	85, 301, 670, 884, 996
BspCNI	CTCAG	4 cut(s)	163, 171, 284, 679
BspDI	ATCGAT	1 cut(s)	979
BspFNI	CGCG	2 cut(s)	39, 88
BspLI	GGNNCC	2 cut(s)	223, 885
BspMI	ACCTGC	3 cut(s)	305, 883, 958
BspPI	GGATC	2 cut(s)	873, 933
BspQI	GCTCTTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	3 cut(s)	172, 329, 771
BssECI	CCNNGG	3 cut(s)	225, 615, 755
BssMI	GATC	3 cut(s)	865, 925, 976
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	3 cut(s)	225, 615, 755
Bst2UI	CCWGG	2 cut(s)	657, 1001
Bst4CI	ACNGT	2 cut(s)	58, 715
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	861, 994
BstDEI	CTNAG	5 cut(s)	150, 179, 271, 417, 687
BstDSI	CCRYGG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	910, 958
BstFNI	CGCG	2 cut(s)	39, 88
BstHHI	GCGC	5 cut(s)	41, 90, 573, 802, 892
BstKTI	GATC	3 cut(s)	868, 928, 979
BstMBI	GATC	3 cut(s)	865, 925, 976
BstMCI	CGRYCG	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	657, 1001
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	217, 655, 999
BstSFI	CTRYAG	1 cut(s)	303
BstSNI	TACGTA	1 cut(s)	676
BstUI	CGCG	2 cut(s)	39, 88
BstV1I	GCAGC	4 cut(s)	77, 172, 786, 923
BstX2I	RGATCY	2 cut(s)	865, 925
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	865, 925
BstZI	CGGCCG	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	979
BsuRI	GGCC	5 cut(s)	85, 301, 670, 884, 996
BsuTUI	ATCGAT	1 cut(s)	979
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	910, 958
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	3 cut(s)	54, 287, 764
BveI	ACCTGC	3 cut(s)	305, 883, 958
Cac8I	GCNNGC	2 cut(s)	861, 994
CaiI	CAGNNNCTG	2 cut(s)	178, 278
CfoI	GCGC	5 cut(s)	41, 90, 573, 802, 892
Cfr13I	GGNCC	3 cut(s)	379, 883, 994
ClaI	ATCGAT	1 cut(s)	979
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	711, 826
CviAII	CATG	4 cut(s)	119, 325, 350, 756
CviQI	GTAC	2 cut(s)	711, 826
DdeI	CTNAG	5 cut(s)	150, 179, 271, 417, 687
DpnI	GATC	3 cut(s)	867, 927, 978
DpnII	GATC	3 cut(s)	865, 925, 976
DrdI	GACNNNNNNGTC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	83
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	435
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	2 cut(s)	30, 878
Ecl136II	GAGCTC	3 cut(s)	80, 445, 743
EclXI	CGGCCG	1 cut(s)	83
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	3 cut(s)	225, 615, 755
Eco24I	GRGCYC	3 cut(s)	82, 447, 745
Eco47I	GGWCC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	83
Eco53kI	GAGCTC	3 cut(s)	80, 445, 743
Eco57I	CTGAAG	3 cut(s)	426, 447, 719
EcoICRI	GAGCTC	3 cut(s)	80, 445, 743
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	655, 999
EcoT14I	CCWWGG	3 cut(s)	225, 615, 755
EcoT38I	GRGCYC	3 cut(s)	82, 447, 745
ErhI	CCWWGG	3 cut(s)	225, 615, 755
FaeI	CATG	4 cut(s)	122, 328, 353, 759
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	614, 958
FatI	CATG	4 cut(s)	118, 324, 349, 755
FauI	CCCGC	1 cut(s)	985
Fnu4HI	GCNGC	9 cut(s)	13, 86, 91, 155, 158, 161, 732, 775, 912
FokI	GGATG	2 cut(s)	917, 965
FriOI	GRGCYC	3 cut(s)	82, 447, 745
Fsp4HI	GCNGC	9 cut(s)	13, 86, 91, 155, 158, 161, 732, 775, 912
FspBI	CTAG	4 cut(s)	401, 521, 735, 929
FspI	TGCGCA	1 cut(s)	891
GlaI	GCGC	5 cut(s)	40, 89, 572, 801, 891
GluI	GCNGC	9 cut(s)	13, 86, 91, 155, 158, 161, 732, 775, 912
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	5 cut(s)	85, 301, 670, 884, 996
HapII	CCGG	3 cut(s)	218, 295, 311
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	5 cut(s)	41, 90, 573, 802, 892
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	4 cut(s)	122, 328, 353, 759
Hin6I	GCGC	5 cut(s)	39, 88, 571, 800, 890
HinP1I	GCGC	5 cut(s)	39, 88, 571, 800, 890
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	3 cut(s)	203, 396, 1014
HpaII	CCGG	3 cut(s)	218, 295, 311
HphI	GGTGA	5 cut(s)	212, 503, 631, 744, 853
Hpy166II	GTNNAC	2 cut(s)	379, 762
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	4 cut(s)	190, 343, 557, 782
Hpy8I	GTNNAC	2 cut(s)	379, 762
HpyAV	CCTTC	7 cut(s)	224, 481, 590, 637, 694, 832, 849
HpyCH4III	ACNGT	2 cut(s)	58, 715
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	6 cut(s)	287, 500, 665, 774, 899, 1010
HpyF3I	CTNAG	5 cut(s)	150, 179, 271, 417, 687
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	122, 328, 353, 759
HspAI	GCGC	5 cut(s)	39, 88, 571, 800, 890
Kzo9I	GATC	3 cut(s)	865, 925, 976
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	5 cut(s)	221, 297, 313, 568, 740
Lsp1109I	GCAGC	4 cut(s)	77, 172, 786, 923
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	4 cut(s)	401, 521, 735, 929
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	5 cut(s)	106, 280, 491, 619, 841
MalI	GATC	3 cut(s)	867, 927, 978
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	3 cut(s)	865, 925, 976
MboII	GAAGA	6 cut(s)	56, 419, 422, 440, 452, 652
MflI	RGATCY	2 cut(s)	865, 925
MhlI	GDGCHC	3 cut(s)	82, 447, 745
MluCI	AATT	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	3 cut(s)	536, 831, 870
MslI	CAYNNNNRTG	1 cut(s)	757
MspI	CCGG	3 cut(s)	218, 295, 311
MspR9I	CCNGG	3 cut(s)	219, 657, 1001
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	657, 1001
MvnI	CGCG	2 cut(s)	39, 88
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	755
NdeII	GATC	3 cut(s)	865, 925, 976
NlaIII	CATG	4 cut(s)	122, 328, 353, 759
NlaIV	GGNNCC	2 cut(s)	223, 885
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	4 cut(s)	106, 491, 619, 841
NsbI	TGCGCA	1 cut(s)	891
NspI	RCATGY	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	203, 396, 1014
PflFI	GACNNNGTC	1 cut(s)	959
PfoI	TCCNGGA	2 cut(s)	217, 999
PkrI	GCNGC	9 cut(s)	14, 87, 92, 156, 159, 162, 733, 776, 913
Ppu21I	YACGTR	1 cut(s)	676
Psp124BI	GAGCTC	3 cut(s)	82, 447, 745
Psp6I	CCWGG	2 cut(s)	655, 999
PspGI	CCWGG	2 cut(s)	655, 999
PspN4I	GGNNCC	2 cut(s)	223, 885
PspPI	GGNCC	3 cut(s)	379, 883, 994
PstNI	CAGNNNCTG	2 cut(s)	178, 278
PsuI	RGATCY	2 cut(s)	865, 925
PsyI	GACNNNGTC	1 cut(s)	959
RsaI	GTAC	2 cut(s)	712, 827
RsaNI	GTAC	2 cut(s)	711, 826
RseI	CAYNNNNRTG	1 cut(s)	757
SacI	GAGCTC	3 cut(s)	82, 447, 745
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	536, 831, 870
SatI	GCNGC	9 cut(s)	13, 86, 91, 155, 158, 161, 732, 775, 912
Sau3AI	GATC	3 cut(s)	865, 925, 976
Sau96I	GGNCC	3 cut(s)	379, 883, 994
ScrFI	CCNGG	3 cut(s)	219, 657, 1001
SduI	GDGCHC	3 cut(s)	82, 447, 745
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SnaBI	TACGTA	1 cut(s)	676
Sse9I	AATT	1 cut(s)	383
SspMI	CTAG	4 cut(s)	401, 521, 735, 929
SstI	GAGCTC	3 cut(s)	82, 447, 745
StyD4I	CCNGG	3 cut(s)	217, 655, 999
StyI	CCWWGG	3 cut(s)	225, 615, 755
TaaI	ACNGT	2 cut(s)	58, 715
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	1 cut(s)	979
TasI	AATT	1 cut(s)	383
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	5 cut(s)	15, 88, 157, 160, 734
TfiI	GAWTC	3 cut(s)	203, 396, 1014
Tru1I	TTAA	3 cut(s)	536, 831, 870
Tru9I	TTAA	3 cut(s)	536, 831, 870
TscAI	CASTG	3 cut(s)	61, 294, 771
TseFI	GTSAC	4 cut(s)	106, 491, 619, 841
TseI	GCWGC	4 cut(s)	90, 160, 774, 911
Tsp45I	GTSAC	4 cut(s)	106, 491, 619, 841
TspDTI	ATGAA	4 cut(s)	17, 118, 453, 921
TspRI	CASTG	3 cut(s)	61, 294, 771
Tth111I	GACNNNGTC	1 cut(s)	959
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	4 cut(s)	401, 521, 735, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.