FvH4_1g16330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003785
Physical Location & Seq
Forward (+)
9401851 .. 9404436
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16330.t3

Sequence Viewer

Length: 1035 bp
ATGAAAGTTGGCGGCGGAGTATTGTACGGACGTCCTCGAGCCACTGCCTTTCCCACTGTGCTTCTTGGCCATGAAAGAGCTAGTCCGCGCTGTTCTTATTCCTCTGCCTGTTCTGACCATGTCTCTTTCATTAAGGAGGTGGCAGGAACTCAACCTCCTCAGCATTTGAGTGAGTTGATGAAAATGCTCAAGACAAGAGGTGATTCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCCGTACCACTTTCAAAAAATAGCTCAGGTGTTGTAACTGCATTGCTCCGGTGGCCTACAGCTCCACCAGGTATGGATATGCCAGTAGTTGAGGTCAAGAAGCATGGGGTGTGGCTATTAGCAAAGGATGTGGACCAACTTATCCATAGAATTCTAGTTGAAGAGGATGCTAAACACGCTGGGGAAAGCAATGAGGAGATATTTCATGCGTCTGGTGATGCTGGGGAGAAACTTTATAAGAAGGGTGACTTTGCCAAGTCACAGATATCAAAACTAGATATCTATATCTTAAGAAACGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAATACGCATTTTGAGGAAGGGGACCAAGTCTCGGCTCTGGTAACGGGAGAATTCTATACAAAGAAGGAGCATTTTCCTGGATTTGCACGGCCTTTTGTATTCAATGCTGAGGTTTTGCTGAAGGTCGGTCGTACAGTTGAAGCTAAGGATGCTGCTAGGGGAGCTTTAAAATCACCCTGGTGGACTCTGGGTTGCAAATACCAGGAAGTTGCTGAAATAGCACAATGGGAGGATGAGCAAATTGAGTACATTAAGGAGAGGGTGAGCGAAGAGGGAAGGCAAGCAGATCTGAAGAAGGGGAAAGCCCCTGCACAGGTTGCATTGGATGAAGCCGCTTTTTTATTGGATTTAGCTTCTGTTGAAGAGAGTTGGGATGAATATGTGGAGCAGGTTGCTAATTGTTATAAAGAGGGTGGTCTCCCCGATATTGCAAAATTTGTGCTATACAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.08

Weight (kDa)

5.81

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 483, 984
AatII GACGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 958
AccII CGCG 1 cut(s) 88
AciI CCGC 4 cut(s) 12, 15, 86, 912
AclI AACGTT 1 cut(s) 543
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 396, 629, 1013
AcuI CTGAAG 2 cut(s) 719, 890
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 4 cut(s) 26, 252, 712, 827
AfiI CCNNNNNNNGG 2 cut(s) 610, 892
AflII CTTAAG 1 cut(s) 535
AgsI TTSAA 5 cut(s) 261, 407, 682, 719, 941
AjnI CCWGG 5 cut(s) 217, 313, 655, 755, 780
AleI CACNNNNGTG 1 cut(s) 757
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 6 cut(s) 80, 270, 308, 722, 743, 932
AluI AGCT 6 cut(s) 80, 270, 308, 722, 743, 932
Alw26I GTCTC 3 cut(s) 127, 613, 1001
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 67, 299, 668
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 3 cut(s) 396, 629, 1013
AspLEI GCGC 2 cut(s) 90, 573
AspS9I GGNCC 2 cut(s) 379, 601
AsuHPI GGTGA 5 cut(s) 212, 473, 503, 744, 853
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 2 cut(s) 379, 601
BalI TGGCCA 1 cut(s) 69
BbvCI CCTCAGC 2 cut(s) 159, 687
BbvI GCAGC 1 cut(s) 718
BceAI ACGGC 2 cut(s) 233, 683
BciT130I CCWGG 5 cut(s) 219, 315, 657, 757, 782
BcoDI GTCTC 3 cut(s) 127, 613, 1001
BfaI CTAG 4 cut(s) 81, 401, 521, 735
BfmI CTRYAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 958
BglII AGATCT 1 cut(s) 865
BisI GCNGC 3 cut(s) 13, 732, 912
BlsI GCNGC 3 cut(s) 14, 733, 913
Bme1390I CCNGG 5 cut(s) 219, 315, 657, 757, 782
Bme18I GGWCC 2 cut(s) 379, 601
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 379, 601
BmiI GGNNCC 1 cut(s) 602
BmrFI CCNGG 5 cut(s) 219, 315, 657, 757, 782
BmsI GCATC 3 cut(s) 403, 454, 718
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 4 cut(s) 159, 271, 687, 723
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 1 cut(s) 755
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 892
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 2 cut(s) 287, 442
BseBI CCWGG 5 cut(s) 219, 315, 657, 757, 782
BseDI CCNNGG 1 cut(s) 755
BseGI GGATG 6 cut(s) 379, 418, 733, 817, 910, 958
BseLI CCNNNNNNNGG 2 cut(s) 610, 892
BseMI GCAATG 2 cut(s) 287, 442
BseMII CTCAG 3 cut(s) 173, 285, 678
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 2 cut(s) 147, 455
BseXI GCAGC 1 cut(s) 718
BseYI CCCAGC 2 cut(s) 425, 467
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 3 cut(s) 69, 301, 670
BsiEI CGRYCG 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 610, 892
BsmAI GTCTC 3 cut(s) 127, 613, 1001
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 3 cut(s) 69, 301, 670
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 865
BspACI CCGC 4 cut(s) 12, 15, 86, 912
BspANI GGCC 3 cut(s) 69, 301, 670
BspCNI CTCAG 3 cut(s) 172, 284, 679
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 958
BspTI CTTAAG 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 2 cut(s) 287, 442
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 755
BssMI GATC 1 cut(s) 865
BssNI GRCGYC 1 cut(s) 31
Bst2UI CCWGG 5 cut(s) 219, 315, 657, 757, 782
Bst4CI ACNGT 2 cut(s) 58, 715
Bst6I CTCTTC 3 cut(s) 402, 843, 936
BstACI GRCGYC 1 cut(s) 31
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 159, 271, 687, 723
BstF5I GGATG 6 cut(s) 379, 418, 733, 817, 910, 958
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 2 cut(s) 90, 573
BstKTI GATC 1 cut(s) 868
BstMAI GTCTC 3 cut(s) 127, 613, 1001
BstMBI GATC 1 cut(s) 865
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 6 cut(s) 298, 422, 728, 740, 797, 896
BstNI CCWGG 5 cut(s) 219, 315, 657, 757, 782
BstSCI CCNGG 5 cut(s) 217, 313, 655, 755, 780
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 3 cut(s) 69, 301, 670
BtsCI GGATG 6 cut(s) 379, 418, 733, 817, 910, 958
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 54
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 1 cut(s) 861
CfoI GCGC 2 cut(s) 90, 573
Cfr13I GGNCC 2 cut(s) 379, 601
CseI GACGC 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 4 cut(s) 25, 251, 711, 826
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 4 cut(s) 71, 119, 350, 452
CviQI GTAC 4 cut(s) 25, 251, 711, 826
DdeI CTNAG 4 cut(s) 159, 271, 687, 723
DpnI GATC 1 cut(s) 867
DpnII GATC 1 cut(s) 865
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 402, 843, 936
EarI CTCTTC 3 cut(s) 402, 843, 936
EciI GGCGGA 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 1001
Eco32I GATATC 2 cut(s) 513, 526
Eco47I GGWCC 2 cut(s) 379, 601
Eco57I CTGAAG 2 cut(s) 719, 890
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 396, 629
EcoRII CCWGG 5 cut(s) 217, 313, 655, 755, 780
EcoRV GATATC 2 cut(s) 513, 526
FaeI CATG 4 cut(s) 74, 122, 353, 455
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 70, 118, 349, 451
Fnu4HI GCNGC 3 cut(s) 13, 732, 912
FokI GGATG 6 cut(s) 386, 425, 740, 824, 917, 965
Fsp4HI GCNGC 3 cut(s) 13, 732, 912
FspBI CTAG 4 cut(s) 81, 401, 521, 735
GlaI GCGC 2 cut(s) 89, 572
GluI GCNGC 3 cut(s) 13, 732, 912
GsaI CCCAGC 2 cut(s) 429, 471
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 69, 301, 670
HapII CCGG 1 cut(s) 295
HgaI GACGC 1 cut(s) 444
HhaI GCGC 2 cut(s) 90, 573
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 4 cut(s) 74, 122, 353, 455
Hin6I GCGC 2 cut(s) 88, 571
HinP1I GCGC 2 cut(s) 88, 571
HinfI GANTC 2 cut(s) 203, 763
HpaII CCGG 1 cut(s) 295
HphI GGTGA 5 cut(s) 212, 473, 503, 744, 853
Hpy166II GTNNAC 2 cut(s) 379, 762
Hpy188I TCNGA 2 cut(s) 115, 870
Hpy188III TCNNGA 3 cut(s) 190, 343, 557
Hpy8I GTNNAC 2 cut(s) 379, 762
HpyAV CCTTC 6 cut(s) 481, 590, 637, 694, 849, 868
HpyCH4III ACNGT 2 cut(s) 58, 715
HpyCH4IV ACGT 2 cut(s) 31, 543
HpyCH4V TGCA 6 cut(s) 287, 665, 774, 890, 899, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 422, 728, 740, 797, 896
HpyF3I CTNAG 4 cut(s) 159, 271, 687, 723
HpySE526I ACGT 2 cut(s) 31, 543
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 4 cut(s) 74, 122, 353, 455
HspAI GCGC 2 cut(s) 88, 571
Kzo9I GATC 1 cut(s) 865
LmnI GCTCC 7 cut(s) 221, 297, 313, 568, 646, 740, 964
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 3 cut(s) 403, 454, 718
MabI ACCWGGT 1 cut(s) 313
MaeI CTAG 4 cut(s) 81, 401, 521, 735
MaeII ACGT 2 cut(s) 31, 543
MaeIII GTNAC 4 cut(s) 280, 491, 504, 619
MalI GATC 1 cut(s) 867
MboI GATC 1 cut(s) 865
MboII GAAGA 4 cut(s) 419, 860, 883, 953
MflI RGATCY 1 cut(s) 865
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 5 cut(s) 396, 629, 819, 976, 1013
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 757
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 132, 236, 536, 746, 831
MslI CAYNNNNRTG 2 cut(s) 168, 757
Msp20I TGGCCA 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 5 cut(s) 219, 315, 657, 757, 782
MvaI CCWGG 5 cut(s) 219, 315, 657, 757, 782
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 6 cut(s) 298, 422, 728, 740, 797, 896
NdeII GATC 1 cut(s) 865
NlaIII CATG 4 cut(s) 74, 122, 353, 455
NlaIV GGNNCC 1 cut(s) 602
NmeAIII GCCGAG 1 cut(s) 590
NmuCI GTSAC 2 cut(s) 491, 504
OliI CACNNNNGTG 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 203
PflFI GACNNNGTC 2 cut(s) 119, 605
PfoI TCCNGGA 2 cut(s) 217, 655
PkrI GCNGC 3 cut(s) 14, 733, 913
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PsiI TTATAA 2 cut(s) 483, 984
Psp1406I AACGTT 1 cut(s) 543
Psp6I CCWGG 5 cut(s) 217, 313, 655, 755, 780
PspFI CCCAGC 2 cut(s) 425, 467
PspGI CCWGG 5 cut(s) 217, 313, 655, 755, 780
PspN4I GGNNCC 1 cut(s) 602
PspPI GGNCC 2 cut(s) 379, 601
PspXI VCTCGAGB 1 cut(s) 36
PsuI RGATCY 1 cut(s) 865
PsyI GACNNNGTC 2 cut(s) 119, 605
RsaI GTAC 4 cut(s) 26, 252, 712, 827
RsaNI GTAC 4 cut(s) 25, 251, 711, 826
RseI CAYNNNNRTG 2 cut(s) 168, 757
SaqAI TTAA 5 cut(s) 132, 236, 536, 746, 831
SatI GCNGC 3 cut(s) 13, 732, 912
Sau3AI GATC 1 cut(s) 865
Sau96I GGNCC 2 cut(s) 379, 601
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 5 cut(s) 219, 315, 657, 757, 782
SexAI ACCWGGT 1 cut(s) 313
SfaNI GCATC 3 cut(s) 403, 454, 718
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 379, 601
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 168, 757
SmlI CTYRAG 3 cut(s) 36, 188, 535
SmoI CTYRAG 3 cut(s) 36, 188, 535
Sse9I AATT 5 cut(s) 396, 629, 819, 976, 1013
SsiI CCGC 4 cut(s) 12, 15, 86, 912
SspMI CTAG 4 cut(s) 81, 401, 521, 735
StyD4I CCNGG 5 cut(s) 217, 313, 655, 755, 780
TaaI ACNGT 2 cut(s) 58, 715
TaiI ACGT 2 cut(s) 34, 546
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 695
TasI AATT 5 cut(s) 396, 629, 819, 976, 1013
TatI WGTACW 1 cut(s) 825
TauI GCSGC 2 cut(s) 15, 914
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 5 cut(s) 132, 236, 536, 746, 831
Tru9I TTAA 5 cut(s) 132, 236, 536, 746, 831
TscAI CASTG 2 cut(s) 49, 61
TseFI GTSAC 2 cut(s) 491, 504
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 2 cut(s) 491, 504
TspDTI ATGAA 7 cut(s) 17, 87, 118, 194, 440, 921, 969
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 49, 61
Tth111I GACNNNGTC 2 cut(s) 119, 605
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 379, 601
XapI RAATTY 3 cut(s) 396, 629, 1013
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 4 cut(s) 81, 401, 521, 735
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.