Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Forward (+)

10747433 .. 10749756

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14170.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAAGTTTGCGGCGGATTGGTGTGCGGAGGCTCTCGCGCCACCGCTCTGCCCACTGTGCTTCTTCGGCACGGCAGAGCTCGGCCACGCTGCTCTTATTCCTCTGTCACGCATGACCATGTGTCTTTCATCAAGGAGGTTGCCTCCACTCAGCCGCCGCAGCATTTGAGCCAGTTGCTGAGAATGCTCAAGACAAGAGGTGAATCTATTGTTTCTCCGGGAGCCAAGGAAGGGCTAATCCCCCTTGCCATACCACTTGCCAGAAACAGCTCAGGTGCTGTAACTGCACTGCTCCGGTGGCCTACAGCTCCGGCAGGTATGGACATGCCAGTAGTTGAGGTCAGGAAGCATGGGGTGTGGCTTTTAGCCAAGAATAGTAGACGTCCAATCTTCAATCCGCAGGTGGACCAATTTATTCACAGAATCCTAGCTGAAGAAGATGCTAAGAACCCTGAAGAAAGAAATGAAGAGCTCTTTCAGGCTTCTGCTGATGTTGGGGAGAAACTTTATACGAAGGGTGACTTTGCAAAGTCGCAGATTTCAAAACTAGATTTCTACCTTTTAAGAAAAGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACTATGTTTCGGCCTTGGTGACGGGAGAGTTCTATACGAAGAAGGAACATTTTCCTGGTTTTGCACGGCCTTACGTATTCAATGCTGAGGTTTTGCTGAAGGTCGGGCGTACTGCTGAAGCTAAAGACGCCGCCAGGGGAGCTCTAAAATCACCATGGTGGACACTGGGTTGCAGCTATCAGGAAGTTGCTGACATAGCGCAATGGGAGGACGAGCAAATAGAGTACATTAAGGAGAAGGTGACCGAGGAGGGAAGGCAGGCGGATCTTAAAAAGGGAAAGGCCCCTGCGCAGGTTGCATTGGATGAAGCAGCATTTTTGCTGGATCTAGCTTCCATTGACGGGACTTGGGATGACTATGTCGAGCAGGTTGCTGATCGATATAAAGAGGCGGGCCTCCAGGATATTGCAGTATTCGTATTATATAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.49

Weight (kDa)

6.48

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	385
Acc16I	TGCGCA	1 cut(s)	918
Acc36I	ACCTGC	4 cut(s)	305, 391, 910, 985
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	1 cut(s)	39
AclWI	GGATC	2 cut(s)	900, 960
AcoI	YGGCCR	1 cut(s)	83
AcuI	CTGAAG	4 cut(s)	453, 474, 746, 765
AcyI	GRCGYC	2 cut(s)	382, 756
AfaI	GTAC	2 cut(s)	739, 854
AfiI	CCNNNNNNNGG	3 cut(s)	231, 919, 969
AgsI	TTSAA	3 cut(s)	394, 543, 709
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	682, 761, 1026
AleI	CACNNNNGTG	1 cut(s)	784
AluBI	AGCT	9 cut(s)	80, 270, 308, 431, 472, 749, 770, 804, 959
AluI	AGCT	9 cut(s)	80, 270, 308, 431, 472, 749, 770, 804, 959
Alw21I	GWGCWC	3 cut(s)	82, 474, 772
AlwI	GGATC	2 cut(s)	900, 960
AlwNI	CAGNNNCTG	2 cut(s)	178, 278
AoxI	GGCC	6 cut(s)	83, 299, 639, 695, 909, 1021
ApeKI	GCWGC	4 cut(s)	90, 160, 801, 938
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	4 cut(s)	41, 600, 829, 919
AspS9I	GGNCC	3 cut(s)	406, 910, 1021
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	212, 530, 658, 771, 880
AvaII	GGWCC	1 cut(s)	406
BanII	GRGCYC	3 cut(s)	82, 474, 772
Bbv12I	GWGCWC	3 cut(s)	82, 474, 772
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	4 cut(s)	77, 172, 813, 950
BceAI	ACGGC	2 cut(s)	88, 710
BcgI	CGANNNNNNTGC	2 cut(s)	980, 1014
BciT130I	CCWGG	3 cut(s)	684, 763, 1028
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	3 cut(s)	428, 548, 956
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	4 cut(s)	305, 391, 910, 985
BisI	GCNGC	8 cut(s)	13, 91, 155, 158, 161, 759, 802, 939
BlsI	GCNGC	8 cut(s)	14, 92, 156, 159, 162, 760, 803, 940
Bme1390I	CCNGG	4 cut(s)	219, 684, 763, 1028
Bme18I	GGWCC	1 cut(s)	406
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	406, 910, 1021
BmiI	GGNNCC	2 cut(s)	223, 912
BmrFI	CCNGG	4 cut(s)	219, 684, 763, 1028
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	803
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	1010
Bpu10I	CCTNAGC	2 cut(s)	271, 714
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	1006
BsaAI	YACGTR	1 cut(s)	703
BsaHI	GRCGYC	2 cut(s)	382, 756
BsaJI	CCNNGG	5 cut(s)	225, 642, 762, 782, 873
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 919, 969
Bse1I	ACTGG	3 cut(s)	172, 329, 798
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	3 cut(s)	684, 763, 1028
BseCI	ATCGAT	1 cut(s)	1006
BseDI	CCNNGG	5 cut(s)	225, 642, 762, 782, 873
BseGI	GGATG	2 cut(s)	937, 985
BseLI	CCNNNNNNNGG	3 cut(s)	231, 919, 969
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	4 cut(s)	164, 170, 285, 705
BseNI	ACTGG	3 cut(s)	172, 329, 798
BseRI	GAGGAG	1 cut(s)	890
BseXI	GCAGC	4 cut(s)	77, 172, 813, 950
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	6 cut(s)	85, 301, 641, 697, 911, 1023
BshVI	ATCGAT	1 cut(s)	1006
BsiHKAI	GWGCWC	3 cut(s)	82, 474, 772
BsiSI	CCGG	3 cut(s)	218, 295, 311
BslFI	GGGAC	2 cut(s)	641, 985
BslI	CCNNNNNNNGG	3 cut(s)	231, 919, 969
BsmFI	GGGAC	2 cut(s)	641, 985
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	6 cut(s)	85, 301, 641, 697, 911, 1023
Bsp1286I	GDGCHC	3 cut(s)	82, 474, 772
Bsp143I	GATC	3 cut(s)	892, 952, 1003
Bsp19I	CCATGG	1 cut(s)	782
BspANI	GGCC	6 cut(s)	85, 301, 641, 697, 911, 1023
BspCNI	CTCAG	4 cut(s)	163, 171, 284, 706
BspDI	ATCGAT	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	223, 912
BspMI	ACCTGC	4 cut(s)	305, 391, 910, 985
BspPI	GGATC	2 cut(s)	900, 960
BspQI	GCTCTTC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	836
BsrI	ACTGG	3 cut(s)	172, 329, 798
BssECI	CCNNGG	5 cut(s)	225, 642, 762, 782, 873
BssMI	GATC	3 cut(s)	892, 952, 1003
BssNI	GRCGYC	2 cut(s)	382, 756
BssT1I	CCWWGG	3 cut(s)	225, 642, 782
Bst2UI	CCWGG	3 cut(s)	684, 763, 1028
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	2 cut(s)	382, 756
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	888, 1021
BstDEI	CTNAG	5 cut(s)	150, 179, 271, 444, 714
BstDSI	CCRYGG	1 cut(s)	782
BstEII	GGTNACC	1 cut(s)	868
BstF5I	GGATG	2 cut(s)	937, 985
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	4 cut(s)	41, 600, 829, 919
BstKTI	GATC	3 cut(s)	895, 955, 1006
BstMBI	GATC	3 cut(s)	892, 952, 1003
BstNI	CCWGG	3 cut(s)	684, 763, 1028
BstNSI	RCATGY	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	868
BstSCI	CCNGG	4 cut(s)	217, 682, 761, 1026
BstSFI	CTRYAG	1 cut(s)	303
BstSNI	TACGTA	1 cut(s)	703
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	77, 172, 813, 950
BstX2I	RGATCY	2 cut(s)	892, 952
BstYI	RGATCY	2 cut(s)	892, 952
Bsu15I	ATCGAT	1 cut(s)	1006
BsuRI	GGCC	6 cut(s)	85, 301, 641, 697, 911, 1023
BsuTUI	ATCGAT	1 cut(s)	1006
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	937, 985
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	3 cut(s)	54, 287, 791
BveI	ACCTGC	4 cut(s)	305, 391, 910, 985
Cac8I	GCNNGC	2 cut(s)	888, 1021
CaiI	CAGNNNCTG	2 cut(s)	178, 278
CfoI	GCGC	4 cut(s)	41, 600, 829, 919
Cfr13I	GGNCC	3 cut(s)	406, 910, 1021
ClaI	ATCGAT	1 cut(s)	1006
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	738, 853
CviAII	CATG	5 cut(s)	113, 119, 325, 350, 783
CviQI	GTAC	2 cut(s)	738, 853
DdeI	CTNAG	5 cut(s)	150, 179, 271, 444, 714
DpnI	GATC	3 cut(s)	894, 954, 1005
DpnII	GATC	3 cut(s)	892, 952, 1003
DriI	GACNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	462
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	462
EciI	GGCGGA	2 cut(s)	30, 905
Ecl136II	GAGCTC	3 cut(s)	80, 472, 770
Eco105I	TACGTA	1 cut(s)	703
Eco130I	CCWWGG	3 cut(s)	225, 642, 782
Eco24I	GRGCYC	3 cut(s)	82, 474, 772
Eco47I	GGWCC	1 cut(s)	406
Eco53kI	GAGCTC	3 cut(s)	80, 472, 770
Eco57I	CTGAAG	4 cut(s)	453, 474, 746, 765
Eco91I	GGTNACC	1 cut(s)	868
EcoICRI	GAGCTC	3 cut(s)	80, 472, 770
EcoO109I	RGGNCCY	1 cut(s)	910
EcoO65I	GGTNACC	1 cut(s)	868
EcoRII	CCWGG	3 cut(s)	682, 761, 1026
EcoT14I	CCWWGG	3 cut(s)	225, 642, 782
EcoT38I	GRGCYC	3 cut(s)	82, 474, 772
ErhI	CCWWGG	3 cut(s)	225, 642, 782
FaeI	CATG	5 cut(s)	116, 122, 328, 353, 786
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	2 cut(s)	641, 985
FatI	CATG	5 cut(s)	112, 118, 324, 349, 782
FauI	CCCGC	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	13, 91, 155, 158, 161, 759, 802, 939
FokI	GGATG	2 cut(s)	944, 992
FriOI	GRGCYC	3 cut(s)	82, 474, 772
Fsp4HI	GCNGC	8 cut(s)	13, 91, 155, 158, 161, 759, 802, 939
FspBI	CTAG	3 cut(s)	428, 548, 956
FspI	TGCGCA	1 cut(s)	918
GlaI	GCGC	4 cut(s)	40, 599, 828, 918
GluI	GCNGC	8 cut(s)	13, 91, 155, 158, 161, 759, 802, 939
GsuI	CTGGAG	1 cut(s)	1010
HaeIII	GGCC	6 cut(s)	85, 301, 641, 697, 911, 1023
HapII	CCGG	3 cut(s)	218, 295, 311
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	4 cut(s)	41, 600, 829, 919
Hin1I	GRCGYC	2 cut(s)	382, 756
Hin1II	CATG	5 cut(s)	116, 122, 328, 353, 786
Hin6I	GCGC	4 cut(s)	39, 598, 827, 917
HinP1I	GCGC	4 cut(s)	39, 598, 827, 917
HinfI	GANTC	2 cut(s)	203, 423
HpaII	CCGG	3 cut(s)	218, 295, 311
HphI	GGTGA	5 cut(s)	212, 530, 658, 771, 880
Hpy166II	GTNNAC	3 cut(s)	380, 406, 789
Hpy188III	TCNNGA	4 cut(s)	190, 343, 584, 809
Hpy8I	GTNNAC	3 cut(s)	380, 406, 789
HpyAV	CCTTC	7 cut(s)	224, 508, 617, 664, 721, 859, 876
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	382, 702
HpyCH4V	TGCA	6 cut(s)	287, 527, 692, 801, 926, 1037
HpyF3I	CTNAG	5 cut(s)	150, 179, 271, 444, 714
HpySE526I	ACGT	2 cut(s)	382, 702
Hsp92I	GRCGYC	2 cut(s)	382, 756
Hsp92II	CATG	5 cut(s)	116, 122, 328, 353, 786
HspAI	GCGC	4 cut(s)	39, 598, 827, 917
Kzo9I	GATC	3 cut(s)	892, 952, 1003
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	5 cut(s)	221, 297, 313, 595, 767
Lsp1109I	GCAGC	4 cut(s)	77, 172, 813, 950
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	428, 548, 956
MaeII	ACGT	2 cut(s)	382, 702
MaeIII	GTNAC	5 cut(s)	106, 280, 518, 646, 868
MalI	GATC	3 cut(s)	894, 954, 1005
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	3 cut(s)	892, 952, 1003
MboII	GAAGA	7 cut(s)	56, 382, 446, 449, 467, 479, 679
MflI	RGATCY	2 cut(s)	892, 952
MhlI	GDGCHC	3 cut(s)	82, 474, 772
MluCI	AATT	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	3 cut(s)	563, 858, 897
MslI	CAYNNNNRTG	2 cut(s)	117, 784
MspI	CCGG	3 cut(s)	218, 295, 311
MspR9I	CCNGG	4 cut(s)	219, 684, 763, 1028
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	684, 763, 1028
MvnI	CGCG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	892, 952, 1003
NlaIII	CATG	5 cut(s)	116, 122, 328, 353, 786
NlaIV	GGNNCC	2 cut(s)	223, 912
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	4 cut(s)	106, 518, 646, 868
NsbI	TGCGCA	1 cut(s)	918
NspI	RCATGY	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	784
PaqCI	CACCTGC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	462
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	203, 423
PflFI	GACNNNGTC	1 cut(s)	986
PfoI	TCCNGGA	2 cut(s)	217, 1026
PkrI	GCNGC	8 cut(s)	14, 92, 156, 159, 162, 760, 803, 940
Ppu21I	YACGTR	1 cut(s)	703
Psp124BI	GAGCTC	3 cut(s)	82, 474, 772
Psp6I	CCWGG	3 cut(s)	682, 761, 1026
PspEI	GGTNACC	1 cut(s)	868
PspGI	CCWGG	3 cut(s)	682, 761, 1026
PspN4I	GGNNCC	2 cut(s)	223, 912
PspPI	GGNCC	3 cut(s)	406, 910, 1021
PstNI	CAGNNNCTG	2 cut(s)	178, 278
PsuI	RGATCY	2 cut(s)	892, 952
PsyI	GACNNNGTC	1 cut(s)	986
RsaI	GTAC	2 cut(s)	739, 854
RsaNI	GTAC	2 cut(s)	738, 853
RseI	CAYNNNNRTG	2 cut(s)	117, 784
SacI	GAGCTC	3 cut(s)	82, 474, 772
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	563, 858, 897
SatI	GCNGC	8 cut(s)	13, 91, 155, 158, 161, 759, 802, 939
Sau3AI	GATC	3 cut(s)	892, 952, 1003
Sau96I	GGNCC	3 cut(s)	406, 910, 1021
ScrFI	CCNGG	4 cut(s)	219, 684, 763, 1028
SduI	GDGCHC	3 cut(s)	82, 474, 772
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	2 cut(s)	117, 784
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SnaBI	TACGTA	1 cut(s)	703
Sse9I	AATT	1 cut(s)	410
SspMI	CTAG	3 cut(s)	428, 548, 956
SstI	GAGCTC	3 cut(s)	82, 474, 772
StyD4I	CCNGG	4 cut(s)	217, 682, 761, 1026
StyI	CCWWGG	3 cut(s)	225, 642, 782
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	385, 705
TaqI	TCGA	2 cut(s)	990, 1006
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	1 cut(s)	410
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	4 cut(s)	15, 157, 160, 761
TfiI	GAWTC	2 cut(s)	203, 423
Tru1I	TTAA	3 cut(s)	563, 858, 897
Tru9I	TTAA	3 cut(s)	563, 858, 897
TscAI	CASTG	3 cut(s)	61, 294, 798
TseFI	GTSAC	4 cut(s)	106, 518, 646, 868
TseI	GCWGC	4 cut(s)	90, 160, 801, 938
Tsp45I	GTSAC	4 cut(s)	106, 518, 646, 868
TspDTI	ATGAA	4 cut(s)	17, 118, 480, 948
TspRI	CASTG	3 cut(s)	61, 294, 798
Tth111I	GACNNNGTC	1 cut(s)	986
VpaK11BI	GGWCC	1 cut(s)	406
XceI	RCATGY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	3 cut(s)	428, 548, 956
ZraI	GACGTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.