Rw2G014390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003785
Physical Location & Seq
Forward (+)
16169794 .. 16171966
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014390.1

Sequence Viewer

Length: 1035 bp
ATGAAAGTTGGCGGCGGAGTAGTGTACGGACGTCCTCGAGCCACTGCTTTTCCCACTGTGCTTCTTGGCCATGGCAGAGCTAGTCCACGCTGTTCTTATTCCTCTTCCAGTTCTGACCATGTGTCTTTCATTAAGGAGGTGGCAGGAACTCAGCCTCCACAGCATTTGAGCCAGCTGCTGAAAATGCTCAAGACCAGAGGTGATTCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCCGTACCTCTTTCAAAAAATAGCTCAGGTGCTGTAACTGCATTGCTTCGGTGGCCTACAGCTCCACCAGGTATGGATATGCCGGTAGTTGAGGTCAGGAAGCATGGGGTGTGGCTTTTAGCTAAAAATGTAGACCAACTTATCCATAGAATTCTAGTTGAAGAAGATGCTAAACACTCTGGGGAAAGCAATGAAGAGATATTTCATGCATCTGGTGATGCTGGGGAGAAACTTTATAAAAAGGGTGACTTTGCCAAGTCAGAGATTTCAAAACTAGATATCTACATTTTAAGAAAAGTTGGTTTATTTCCAGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACCAAGTCTCAGCTTTGGTAACGGGAGAATTCTACACAAAGAAGGAGCATTTTCCTGGATTTGCACGGCCTTTTGTATTCAATGCTGAGGTTTTGCTGAAGGTCGGTCGTACAGTTGAAGCTAAAGATGCTGCTAGGGGAGCTTTAAAATCACCCTGGTGGACTCTGGGGTGCAAATACCAGGAAGTTGCTGATATAGCACAATGGGAGGATGAGCAAATTGAGTACATTAAGGAGAGGGTGAGTGAGGAGGGAAGGCAAGCAGATCTGAAAAAGGGGAAAGCCCCTGCACAGGTCGCATTGGATGAAGCAGCTTTTTTATTGGATTTAGCTTCTGTTGAAGAGAGTTGGGATGAATATGTGGAGCAGGTTGCTAATTGTTACAAAGAAGGTGGCCTCCCAGATATTGCAAAATTTGTGCTATGCAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.03

Weight (kDa)

6.34

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AatII GACGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 958
AccI GTMKAC 1 cut(s) 378
AciI CCGC 2 cut(s) 12, 15
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 396, 629, 1013
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 4 cut(s) 26, 252, 712, 827
AfiI CCNNNNNNNGG 1 cut(s) 892
AgsI TTSAA 6 cut(s) 261, 407, 516, 682, 719, 941
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 5 cut(s) 217, 313, 655, 755, 780
AleI CACNNNNGTG 1 cut(s) 757
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
Alw26I GTCTC 1 cut(s) 613
AlwNI CAGNNNCTG 2 cut(s) 178, 278
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 4 cut(s) 67, 299, 668, 994
ApeKI GCWGC 3 cut(s) 175, 731, 911
ApoI RAATTY 3 cut(s) 396, 629, 1013
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 5 cut(s) 212, 473, 503, 744, 853
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 162, 718, 923
BceAI ACGGC 2 cut(s) 233, 683
BciT130I CCWGG 5 cut(s) 219, 315, 657, 757, 782
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 4 cut(s) 81, 401, 521, 735
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 958
BglII AGATCT 1 cut(s) 865
BisI GCNGC 4 cut(s) 13, 176, 732, 912
BlsI GCNGC 4 cut(s) 14, 177, 733, 913
Bme1390I CCNGG 5 cut(s) 219, 315, 657, 757, 782
Bme18I GGWCC 1 cut(s) 601
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 1 cut(s) 602
BmrFI CCNGG 5 cut(s) 219, 315, 657, 757, 782
BmsI GCATC 4 cut(s) 403, 454, 464, 718
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 271, 687
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 70, 755
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 892
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 287, 442
BseBI CCWGG 5 cut(s) 219, 315, 657, 757, 782
BseDI CCNNGG 2 cut(s) 70, 755
BseGI GGATG 3 cut(s) 817, 910, 958
BseLI CCNNNNNNNGG 1 cut(s) 892
BseMI GCAATG 2 cut(s) 287, 442
BseMII CTCAG 4 cut(s) 164, 285, 624, 678
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 3 cut(s) 162, 718, 923
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 873
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 4 cut(s) 69, 301, 670, 996
BsiEI CGRYCG 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 1 cut(s) 892
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 4 cut(s) 69, 301, 670, 996
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 865
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 12, 15
BspANI GGCC 4 cut(s) 69, 301, 670, 996
BspCNI CTCAG 4 cut(s) 163, 284, 623, 679
BspLI GGNNCC 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 958
BsrDI GCAATG 2 cut(s) 287, 442
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 70, 755
BssMI GATC 1 cut(s) 865
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 5 cut(s) 219, 315, 657, 757, 782
Bst4CI ACNGT 2 cut(s) 58, 715
Bst6I CTCTTC 3 cut(s) 109, 435, 936
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 173, 861
BstDEI CTNAG 4 cut(s) 150, 271, 610, 687
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 3 cut(s) 817, 910, 958
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 1 cut(s) 868
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 1 cut(s) 865
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 8 cut(s) 160, 184, 284, 298, 728, 740, 797, 896
BstNI CCWGG 5 cut(s) 219, 315, 657, 757, 782
BstSCI CCNGG 5 cut(s) 217, 313, 655, 755, 780
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 162, 718, 923
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 4 cut(s) 69, 301, 670, 996
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 3 cut(s) 817, 910, 958
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 54
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 2 cut(s) 173, 861
CaiI CAGNNNCTG 2 cut(s) 178, 278
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 601
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 4 cut(s) 25, 251, 711, 826
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 973, 1008
CviAII CATG 4 cut(s) 71, 119, 350, 452
CviQI GTAC 4 cut(s) 25, 251, 711, 826
DdeI CTNAG 4 cut(s) 150, 271, 610, 687
DpnI GATC 1 cut(s) 867
DpnII GATC 1 cut(s) 865
DraI TTTAAA 1 cut(s) 747
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 109, 435, 936
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 3 cut(s) 109, 435, 936
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 70
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 396, 629
EcoRII CCWGG 5 cut(s) 217, 313, 655, 755, 780
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 74, 122, 353, 455
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 70, 118, 349, 451
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 13, 176, 732, 912
FokI GGATG 3 cut(s) 824, 917, 965
Fsp4HI GCNGC 4 cut(s) 13, 176, 732, 912
FspBI CTAG 4 cut(s) 81, 401, 521, 735
GlaI GCGC 1 cut(s) 572
GluI GCNGC 4 cut(s) 13, 176, 732, 912
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 4 cut(s) 69, 301, 670, 996
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 4 cut(s) 74, 122, 353, 455
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 2 cut(s) 203, 763
HpaII CCGG 1 cut(s) 329
HphI GGTGA 5 cut(s) 212, 473, 503, 744, 853
Hpy166II GTNNAC 4 cut(s) 25, 86, 379, 762
Hpy188I TCNGA 3 cut(s) 115, 508, 870
Hpy188III TCNNGA 3 cut(s) 190, 343, 557
Hpy8I GTNNAC 4 cut(s) 25, 86, 379, 762
HpyAV CCTTC 5 cut(s) 590, 637, 694, 849, 983
HpyCH4III ACNGT 2 cut(s) 58, 715
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 7 cut(s) 287, 455, 665, 774, 890, 1010, 1026
HpyF10VI GCNNNNNNNGC 8 cut(s) 160, 184, 284, 298, 728, 740, 797, 896
HpyF3I CTNAG 4 cut(s) 150, 271, 610, 687
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 4 cut(s) 74, 122, 353, 455
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 1 cut(s) 865
LmnI GCTCC 6 cut(s) 221, 313, 568, 646, 740, 964
Lsp1109I GCAGC 3 cut(s) 162, 718, 923
LweI GCATC 4 cut(s) 403, 454, 464, 718
MabI ACCWGGT 1 cut(s) 313
MaeI CTAG 4 cut(s) 81, 401, 521, 735
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 4 cut(s) 280, 491, 619, 980
MalI GATC 1 cut(s) 867
MboI GATC 1 cut(s) 865
MboII GAAGA 5 cut(s) 96, 419, 422, 452, 953
MflI RGATCY 1 cut(s) 865
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 5 cut(s) 396, 629, 819, 976, 1013
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 757
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 457
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 132, 236, 536, 746, 831
MslI CAYNNNNRTG 1 cut(s) 757
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 5 cut(s) 219, 315, 657, 757, 782
MvaI CCWGG 5 cut(s) 219, 315, 657, 757, 782
MwoI GCNNNNNNNGC 8 cut(s) 160, 184, 284, 298, 728, 740, 797, 896
NcoI CCATGG 1 cut(s) 70
NdeII GATC 1 cut(s) 865
NlaIII CATG 4 cut(s) 74, 122, 353, 455
NlaIV GGNNCC 1 cut(s) 602
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 203
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 2 cut(s) 217, 655
PkrI GCNGC 4 cut(s) 14, 177, 733, 913
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 5 cut(s) 217, 313, 655, 755, 780
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 5 cut(s) 217, 313, 655, 755, 780
PspN4I GGNNCC 1 cut(s) 602
PspPI GGNCC 1 cut(s) 601
PspXI VCTCGAGB 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 178, 278
PsuI RGATCY 1 cut(s) 865
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 4 cut(s) 26, 252, 712, 827
RsaNI GTAC 4 cut(s) 25, 251, 711, 826
RseI CAYNNNNRTG 1 cut(s) 757
SaqAI TTAA 5 cut(s) 132, 236, 536, 746, 831
SatI GCNGC 4 cut(s) 13, 176, 732, 912
Sau3AI GATC 1 cut(s) 865
Sau96I GGNCC 1 cut(s) 601
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 5 cut(s) 219, 315, 657, 757, 782
SexAI ACCWGGT 1 cut(s) 313
SfaNI GCATC 4 cut(s) 403, 454, 464, 718
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 601
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 757
SmlI CTYRAG 2 cut(s) 36, 188
SmoI CTYRAG 2 cut(s) 36, 188
Sse9I AATT 5 cut(s) 396, 629, 819, 976, 1013
SsiI CCGC 2 cut(s) 12, 15
SspMI CTAG 4 cut(s) 81, 401, 521, 735
StyD4I CCNGG 5 cut(s) 217, 313, 655, 755, 780
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 58, 715
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 695
TasI AATT 5 cut(s) 396, 629, 819, 976, 1013
TatI WGTACW 1 cut(s) 825
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 5 cut(s) 132, 236, 536, 746, 831
Tru9I TTAA 5 cut(s) 132, 236, 536, 746, 831
TscAI CASTG 2 cut(s) 49, 61
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 3 cut(s) 175, 731, 911
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 6 cut(s) 17, 118, 440, 453, 921, 969
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 49, 61
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 3 cut(s) 396, 629, 1013
XhoI CTCGAG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 4 cut(s) 81, 401, 521, 735
ZraI GACGTC 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.