Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003785

Physical Location & Seq

Genomic Coordinates Reverse (-)

75175918 .. 75178082

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAAGTTGGCGGCGGAGTAGTGTACGGACGTCCTCGAGCCACTGCCTTTCCCACTGTGCTTCTTGGCCATGGCAGAGCTAGTCCACGCTGTTCTTATTCCTCTTCCAGTTCTGACCATGTGTCTTTCATTAAGGAGGTGGCAGGAACTCAGCCTCCACAGCATTTGAGCCAGCTGCTGAAAATGCTCAAGACCAGAGGTGATTCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCCGTACCACTTTCAAAAAATAGCTCAGGTGCTGTAACCGCATTGCTTCGGTGGCCTACAGCTCCCCCAGGTATGGATATGCCAGTAGTTGAGGTCAAGAAGCATGGGGTGTGGCTTTTAGCTAAAAATGTAGACCAACTTATCCATAGAATTCTAGTTGAAGAAGATGCTAAACAATCTGGGGAAAGCAATGAAGAGATATTTCATGCATCTGATGTCTTGGAGCGCAAAGTGAAGTGGCATTTTGAGGAAGGGGACCAAGTCTCAGCTTTGGTAACGGGAGAATTCTACACAAAGAAGGAGCATTTTCCTGGATTTGCACGGCCTTTTGTATTCAATGCTGAGGTTTTGCTGAAGGTCGGTTGTACAGTTGAAGCTAAAGATGCTGCTAGGGGAGCTTTAAAATCACCCTGGTGGACTCTGGGGTGCAAATACCAGGAAGTTGCTGATATAGCACAATGGGAGGATGAGCAAATTGAGTACATTAAGGAGAGGGTGAGCGAGGAGGAAGGCAAGCAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.25

Weight (kDa)

6.72

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23370 AT2G23370 AT4G34090 AT4G34090 AT4G34090
fragaria_vesca	FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330 FvH4_1g16330
malus_domestica	MD02G1175800.v1.1
prunus_persica	Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1 Prupe.6G231900_v2.0.a1
pyrus_communis	pycom02g14170
rosa_chinensis	RchiOBHm_Chr2g0106191
rosa_laevigata	RLG00000000200
rosa_multiflora	Rmu_sc0007100.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137390
rosa_rugosa	Rorug02G0133300 Rorug02G0133300
rosa_samantha	Rh2AG184300 Rh2BG194800 Rh2CG189200 Rh2DG190700
rosa_wichuraiana	Rw2G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	3 cut(s)	12, 15, 285
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	396, 530
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	31
AfaI	GTAC	4 cut(s)	26, 252, 613, 728
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	261, 407, 583, 620
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	5 cut(s)	217, 313, 556, 656, 681
AleI	CACNNNNGTG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	8 cut(s)	80, 175, 270, 308, 368, 515, 623, 644
AluI	AGCT	8 cut(s)	80, 175, 270, 308, 368, 515, 623, 644
Alw26I	GTCTC	1 cut(s)	514
AlwNI	CAGNNNCTG	2 cut(s)	178, 278
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	67, 299, 569
ApeKI	GCWGC	2 cut(s)	175, 632
ApoI	RAATTY	2 cut(s)	396, 530
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	3 cut(s)	212, 645, 754
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	162, 619
BceAI	ACGGC	2 cut(s)	233, 584
BciT130I	CCWGG	5 cut(s)	219, 315, 558, 658, 683
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	3 cut(s)	81, 401, 636
BfmI	CTRYAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	3 cut(s)	13, 176, 633
BlsI	GCNGC	3 cut(s)	14, 177, 634
Bme1390I	CCNGG	5 cut(s)	219, 315, 558, 658, 683
Bme18I	GGWCC	1 cut(s)	502
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	5 cut(s)	219, 315, 558, 658, 683
BmsI	GCATC	3 cut(s)	403, 464, 619
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	2 cut(s)	271, 588
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	70, 313, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	108, 329
Bse3DI	GCAATG	2 cut(s)	287, 442
BseBI	CCWGG	5 cut(s)	219, 315, 558, 658, 683
BseDI	CCNNGG	3 cut(s)	70, 313, 656
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	2 cut(s)	287, 442
BseMII	CTCAG	4 cut(s)	164, 285, 525, 579
BseNI	ACTGG	2 cut(s)	108, 329
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	2 cut(s)	162, 619
BshFI	GGCC	3 cut(s)	69, 301, 571
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	69, 301, 571
BsoBI	CYCGRG	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	611
Bsp143I	GATC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	3 cut(s)	12, 15, 285
BspANI	GGCC	3 cut(s)	69, 301, 571
BspCNI	CTCAG	4 cut(s)	163, 284, 524, 580
BspLI	GGNNCC	1 cut(s)	503
BsrDI	GCAATG	2 cut(s)	287, 442
BsrGI	TGTACA	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	108, 329
BssECI	CCNNGG	3 cut(s)	70, 313, 656
BssMI	GATC	1 cut(s)	765
BssNI	GRCGYC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	5 cut(s)	219, 315, 558, 658, 683
Bst4CI	ACNGT	2 cut(s)	58, 616
Bst6I	CTCTTC	2 cut(s)	109, 435
BstACI	GRCGYC	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	173, 761
BstDEI	CTNAG	4 cut(s)	150, 271, 511, 588
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	1 cut(s)	768
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	765
BstMWI	GCNNNNNNNGC	7 cut(s)	160, 184, 284, 298, 629, 641, 698
BstNI	CCWGG	5 cut(s)	219, 315, 558, 658, 683
BstSCI	CCNGG	5 cut(s)	217, 313, 556, 656, 681
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	162, 619
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	69, 301, 571
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 54
Cac8I	GCNNGC	2 cut(s)	173, 761
CaiI	CAGNNNCTG	2 cut(s)	178, 278
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	4 cut(s)	25, 251, 612, 727
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	4 cut(s)	71, 119, 350, 452
CviQI	GTAC	4 cut(s)	25, 251, 612, 727
DdeI	CTNAG	4 cut(s)	150, 271, 511, 588
DpnI	GATC	1 cut(s)	767
DpnII	GATC	1 cut(s)	765
DraI	TTTAAA	1 cut(s)	648
DriI	GACNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	109, 435
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	2 cut(s)	109, 435
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	36
EcoRI	GAATTC	2 cut(s)	396, 530
EcoRII	CCWGG	5 cut(s)	217, 313, 556, 656, 681
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	4 cut(s)	74, 122, 353, 455
FaiI	YATR	8 cut(s)	72, 120, 320, 326, 351, 393, 453, 698
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	70, 118, 349, 451
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	13, 176, 633
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	13, 176, 633
FspBI	CTAG	3 cut(s)	81, 401, 636
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	3 cut(s)	13, 176, 633
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	69, 301, 571
HhaI	GCGC	1 cut(s)	474
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	74, 122, 353, 455
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	2 cut(s)	203, 664
HphI	GGTGA	3 cut(s)	212, 645, 754
Hpy166II	GTNNAC	4 cut(s)	25, 86, 379, 663
Hpy188I	TCNGA	3 cut(s)	115, 460, 770
Hpy188III	TCNNGA	2 cut(s)	190, 343
Hpy8I	GTNNAC	4 cut(s)	25, 86, 379, 663
HpyAV	CCTTC	4 cut(s)	491, 538, 595, 749
HpyCH4III	ACNGT	2 cut(s)	58, 616
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	455, 566, 675
HpyF10VI	GCNNNNNNNGC	7 cut(s)	160, 184, 284, 298, 629, 641, 698
HpyF3I	CTNAG	4 cut(s)	150, 271, 511, 588
HpySE526I	ACGT	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	74, 122, 353, 455
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	765
LmnI	GCTCC	5 cut(s)	221, 313, 469, 547, 641
Lsp1109I	GCAGC	2 cut(s)	162, 619
LweI	GCATC	3 cut(s)	403, 464, 619
MaeI	CTAG	3 cut(s)	81, 401, 636
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	280, 520
MalI	GATC	1 cut(s)	767
MboI	GATC	1 cut(s)	765
MboII	GAAGA	4 cut(s)	96, 419, 422, 452
MflI	RGATCY	1 cut(s)	765
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	3 cut(s)	396, 530, 720
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	4 cut(s)	132, 236, 647, 732
MslI	CAYNNNNRTG	1 cut(s)	658
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	175
MspR9I	CCNGG	5 cut(s)	219, 315, 558, 658, 683
MvaI	CCWGG	5 cut(s)	219, 315, 558, 658, 683
MwoI	GCNNNNNNNGC	7 cut(s)	160, 184, 284, 298, 629, 641, 698
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	765
NlaIII	CATG	4 cut(s)	74, 122, 353, 455
NlaIV	GGNNCC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	506
PfoI	TCCNGGA	2 cut(s)	217, 556
PkrI	GCNGC	3 cut(s)	14, 177, 634
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp6I	CCWGG	5 cut(s)	217, 313, 556, 656, 681
PspGI	CCWGG	5 cut(s)	217, 313, 556, 656, 681
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	36
PstNI	CAGNNNCTG	2 cut(s)	178, 278
PsuI	RGATCY	1 cut(s)	765
PsyI	GACNNNGTC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	26, 252, 613, 728
RsaNI	GTAC	4 cut(s)	25, 251, 612, 727
RseI	CAYNNNNRTG	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	132, 236, 647, 732
SatI	GCNGC	3 cut(s)	13, 176, 633
Sau3AI	GATC	1 cut(s)	765
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	5 cut(s)	219, 315, 558, 658, 683
SfaNI	GCATC	3 cut(s)	403, 464, 619
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	658
SmlI	CTYRAG	2 cut(s)	36, 188
SmoI	CTYRAG	2 cut(s)	36, 188
Sse9I	AATT	3 cut(s)	396, 530, 720
SsiI	CCGC	3 cut(s)	12, 15, 285
SspMI	CTAG	3 cut(s)	81, 401, 636
StyD4I	CCNGG	5 cut(s)	217, 313, 556, 656, 681
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	58, 616
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	396, 530, 720
TatI	WGTACW	2 cut(s)	611, 726
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	132, 236, 647, 732
Tru9I	TTAA	4 cut(s)	132, 236, 647, 732
TscAI	CASTG	2 cut(s)	49, 61
TseI	GCWGC	2 cut(s)	175, 632
TspDTI	ATGAA	4 cut(s)	17, 118, 440, 453
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	49, 61
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	2 cut(s)	396, 530
XhoI	CTCGAG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	3 cut(s)	81, 401, 636
ZraI	GACGTC	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.