Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003382

Physical Location & Seq

Genomic Coordinates Reverse (-)

26801949 .. 26804271

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTGGAACCTTAACGACTCACCCGATCATCACGAAGAATCCGACAGTAGAGGGAATCCGGTCGGACACGTGTCAAACGGGATGAGTCAATCTGCAACGTGGCTACCGTTTGTGCTTCCGGTGACCAGGAATTTCTTTCCGGCTCAAAGCATGGAACCGGGAGTTCGTTGGTCCGGTTTCAATAGTGTCGGTAAGTCGGATCCAAGCGGATCGGGTCGACCAGAAGAGCCGGAGATATCACCGCCGATAAAGAAGAGCCGACGTGGTCCTCGCTCACGTAGCTCTCAGTATCGAGGAGTTACGTTTTACCGACGAACCGGAAGATGGGAGTCACATATTTGGGACTGTGGGAAGCAAGTGTACTTAGGTGGATTTGACACTGCACATGCTGCTGCTCGAGCCTATGATCGAGCGGCGATTAAATTCAGAGGTGTAGATGCAGATATTAATTTCGACATTGAAGACTACCTTGACGATTTGAAACAGATGGGAAATTTGACAAAGGAAGAGTTTATGCATGTACTTAGAAGGCAAAGCACTGGGTTTCCAAGAGGCAGTTCTAAATACAGAGGTGTTACTTTGCACAAATGTGGAAGATGGGAGTCACGTTTGGGTCAATTCCTCAACAAAAAGTACGTTTATTTGGGTCTCTTTGATACCGAGATTGAAGCTGCTAGAGCTTATGATAAAGCGGCAATAAAGTGTAATGGGAAAGACGCTGTTACCAATTTTGACCCTAAAGTATACGAGGAAGAAGAAGATCTTAGCTCAGAGACGACGAGGAACGGTCATAATCTTGGTCTAAGTCTAGGAGAATCATCATCTGAAGAGTTTAGACTCAAGTCTGATATTGCAAGCATAAGAAGTAGGATTAGAGATGAGGAGAGATTATTAGGGAGCGATCTATCGCTAGCAATGATGACGACGACTGTCAGATCGGAAAAGCAGCAATCGGACGGTGGAGGAAATCGAGTGGTGGGAATGGCAGCATCATCAGGATTCTCTCCTCAACCTTCCCCTTACCGCATTCCTCGCACCTTCCACTTCTCTCGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

352

Amino Acids

39.59

Weight (kDa)

8.83

Isoelectric Point (pI)

69.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	96 - 144	2.8e-10	AP2 domain
AP2	PF00847	187 - 237	1.2e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT5G67180 AT5G67180 AT5G67180
fragaria_vesca	FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940
malus_domestica	MD03G1107900.v1.1 MD11G1121200.v1.1
prunus_persica	Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1
pyrus_communis	pycom03g08790 pycom11g10230
rosa_chinensis	RchiOBHm_Chr5g0061491 RchiOBHm_Chr5g0061501
rosa_laevigata	RLG00000035482
rosa_multiflora	Rmu_sc0006126.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019170
rosa_rugosa	Rorug05G0341000 Rorug05G0341100 Rorug05G0341200
rosa_samantha	Rh5AG403200 Rh5BG415600 Rh5CG440300 Rh5DG430100
rosa_wichuraiana	Rw5G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	2 cut(s)	217, 744
AciI	CCGC	5 cut(s)	207, 242, 413, 692, 1024
AclWI	GGATC	3 cut(s)	194, 207, 217
AcsI	RAATTY	3 cut(s)	130, 422, 493
AcuI	CTGAAG	1 cut(s)	846
AcvI	CACGTG	1 cut(s)	70
AfaI	GTAC	3 cut(s)	362, 522, 635
AfiI	CCNNNNNNNGG	1 cut(s)	324
AflIII	ACRYGT	2 cut(s)	67, 69
AgsI	TTSAA	4 cut(s)	181, 461, 481, 668
AjiI	CACGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AleI	CACNNNNGTG	1 cut(s)	588
AluBI	AGCT	4 cut(s)	282, 671, 680, 768
AluI	AGCT	4 cut(s)	282, 671, 680, 768
Alw26I	GTCTC	2 cut(s)	653, 767
AlwI	GGATC	3 cut(s)	194, 207, 217
Ama87I	CYCGRG	1 cut(s)	396
ApeKI	GCWGC	5 cut(s)	389, 392, 671, 946, 986
ApoI	RAATTY	3 cut(s)	130, 422, 493
AseI	ATTAAT	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	171, 266
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	12, 133, 231
AsuNHI	GCTAGC	1 cut(s)	910
AvaI	CYCGRG	1 cut(s)	396
AvaII	GGWCC	2 cut(s)	171, 266
BamHI	GGATCC	1 cut(s)	199
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	376, 379, 658, 958, 998
BccI	CCATC	3 cut(s)	318, 481, 591
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	653, 767
BfaI	CTAG	3 cut(s)	675, 809, 911
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	7 cut(s)	390, 393, 414, 672, 693, 947, 987
BlsI	GCNGC	7 cut(s)	391, 394, 415, 673, 694, 948, 988
Bme1390I	CCNGG	2 cut(s)	127, 159
Bme18I	GGWCC	2 cut(s)	171, 266
BmeT110I	CYCGRG	1 cut(s)	396
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	171, 266
BmiI	GGNNCC	3 cut(s)	8, 156, 201
BmrFI	CCNGG	2 cut(s)	127, 159
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	427, 998
BmtI	GCTAGC	1 cut(s)	914
BmuI	ACTGGG	1 cut(s)	549
BoxI	GACNNNNGTC	3 cut(s)	70, 841, 929
BpiI	GAAGAC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	2 cut(s)	70, 278
BsaI	GGTCTC	1 cut(s)	653
BsaWI	WCCGGW	4 cut(s)	58, 118, 173, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	2 cut(s)	299, 783
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	3 cut(s)	309, 896, 996
BseXI	GCAGC	5 cut(s)	376, 379, 658, 958, 998
BsgI	GTGCAG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	7 cut(s)	59, 119, 140, 158, 174, 230, 318
BslFI	GGGAC	2 cut(s)	356, 1038
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	653, 767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	2 cut(s)	356, 1038
BsmI	GAATGC	1 cut(s)	1026
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	396
Bsp143I	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
BspACI	CCGC	5 cut(s)	207, 242, 413, 692, 1024
BspCNI	CTCAG	2 cut(s)	298, 782
BspLI	GGNNCC	3 cut(s)	8, 156, 201
BspOI	GCTAGC	1 cut(s)	914
BspPI	GGATC	3 cut(s)	194, 207, 217
BspQI	GCTCTTC	2 cut(s)	219, 248
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	544
BssMI	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
BssNAI	GTATAC	1 cut(s)	745
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	6 cut(s)	47, 108, 347, 788, 931, 959
Bst6I	CTCTTC	4 cut(s)	219, 248, 501, 822
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	2 cut(s)	70, 278
BstC8I	GCNNGC	2 cut(s)	856, 912
BstDEI	CTNAG	6 cut(s)	285, 364, 524, 764, 769, 803
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	7 cut(s)	28, 202, 212, 409, 763, 904, 938
BstMAI	GTCTC	2 cut(s)	653, 767
BstMBI	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	279, 389, 398, 677, 1032
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	2 cut(s)	389, 521
BstPAI	GACNNNNGTC	3 cut(s)	70, 841, 929
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	125, 157
BstV1I	GCAGC	5 cut(s)	376, 379, 658, 958, 998
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	2 cut(s)	199, 760
BstYI	RGATCY	2 cut(s)	199, 760
BstZ17I	GTATAC	1 cut(s)	745
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 537
Cac8I	GCNNGC	2 cut(s)	856, 912
Cfr13I	GGNCC	2 cut(s)	171, 266
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	361, 521, 634
CviAII	CATG	3 cut(s)	151, 386, 518
CviJI	RGCY	9 cut(s)	103, 143, 229, 258, 282, 401, 671, 680, 768
CviKI_1	RGCY	9 cut(s)	103, 143, 229, 258, 282, 401, 671, 680, 768
CviQI	GTAC	3 cut(s)	361, 521, 634
DdeI	CTNAG	6 cut(s)	285, 364, 524, 764, 769, 803
DpnI	GATC	7 cut(s)	27, 201, 211, 408, 762, 903, 937
DpnII	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
Eam1104I	CTCTTC	4 cut(s)	219, 248, 501, 822
EarI	CTCTTC	4 cut(s)	219, 248, 501, 822
Eco31I	GGTCTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	171, 266
Eco57I	CTGAAG	1 cut(s)	846
Eco72I	CACGTG	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	3 cut(s)	154, 389, 521
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 747, 779
FaqI	GGGAC	2 cut(s)	356, 1038
FatI	CATG	3 cut(s)	150, 385, 517
FblI	GTMKAC	2 cut(s)	217, 744
Fnu4HI	GCNGC	7 cut(s)	390, 393, 414, 672, 693, 947, 987
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	7 cut(s)	390, 393, 414, 672, 693, 947, 987
FspBI	CTAG	3 cut(s)	675, 809, 911
GluI	GCNGC	7 cut(s)	390, 393, 414, 672, 693, 947, 987
HapII	CCGG	7 cut(s)	59, 119, 140, 158, 174, 230, 318
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	3 cut(s)	154, 389, 521
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	9 cut(s)	17, 38, 55, 85, 329, 602, 815, 837, 999
HpaII	CCGG	7 cut(s)	59, 119, 140, 158, 174, 230, 318
HphI	GGTGA	3 cut(s)	12, 133, 231
Hpy166II	GTNNAC	3 cut(s)	218, 361, 745
Hpy188III	TCNNGA	2 cut(s)	32, 996
Hpy8I	GTNNAC	3 cut(s)	218, 361, 745
Hpy99I	CGWCG	4 cut(s)	264, 315, 781, 928
HpyAV	CCTTC	3 cut(s)	522, 1023, 1048
HpyCH4III	ACNGT	6 cut(s)	47, 108, 347, 788, 931, 959
HpyCH4IV	ACGT	7 cut(s)	69, 98, 262, 277, 302, 607, 636
HpyCH4V	TGCA	6 cut(s)	95, 383, 440, 517, 583, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	279, 389, 398, 677, 1032
HpyF3I	CTNAG	6 cut(s)	285, 364, 524, 764, 769, 803
HpySE526I	ACGT	7 cut(s)	69, 98, 262, 277, 302, 607, 636
Hsp92II	CATG	3 cut(s)	154, 389, 521
Kzo9I	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
LguI	GCTCTTC	2 cut(s)	219, 248
LmnI	GCTCC	1 cut(s)	897
Lsp1109I	GCAGC	5 cut(s)	376, 379, 658, 958, 998
LweI	GCATC	2 cut(s)	427, 998
MaeI	CTAG	3 cut(s)	675, 809, 911
MaeII	ACGT	7 cut(s)	69, 98, 262, 277, 302, 607, 636
MaeIII	GTNAC	6 cut(s)	121, 298, 330, 574, 603, 721
MalI	GATC	7 cut(s)	27, 201, 211, 408, 762, 903, 937
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
MflI	RGATCY	2 cut(s)	199, 760
MluCI	AATT	6 cut(s)	130, 422, 448, 493, 617, 727
MlyI	GAGTC	5 cut(s)	11, 94, 338, 611, 831
MmeI	TCCRAC	3 cut(s)	43, 66, 177
Mph1103I	ATGCAT	1 cut(s)	519
MseI	TTAA	3 cut(s)	12, 420, 447
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	7 cut(s)	59, 119, 140, 158, 174, 230, 318
MspR9I	CCNGG	2 cut(s)	127, 159
Mva1269I	GAATGC	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	5 cut(s)	279, 389, 398, 677, 1032
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
NheI	GCTAGC	1 cut(s)	910
NlaIII	CATG	3 cut(s)	154, 389, 521
NlaIV	GGNNCC	3 cut(s)	8, 156, 201
NmuCI	GTSAC	3 cut(s)	121, 330, 603
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	2 cut(s)	389, 521
OliI	CACNNNNGTG	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	396
PciSI	GCTCTTC	2 cut(s)	219, 248
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 39, 104
PctI	GAATGC	1 cut(s)	1026
PfeI	GAWTC	4 cut(s)	38, 55, 815, 999
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	7 cut(s)	391, 394, 415, 673, 694, 948, 988
PleI	GAGTC	5 cut(s)	11, 93, 337, 610, 831
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
PpsI	GAGTC	5 cut(s)	11, 93, 337, 610, 831
Ppu21I	YACGTR	2 cut(s)	70, 278
PshAI	GACNNNNGTC	3 cut(s)	70, 841, 929
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	125
PspCI	CACGTG	1 cut(s)	70
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	8, 156, 201
PspPI	GGNCC	2 cut(s)	171, 266
PspXI	VCTCGAGB	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	199, 760
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	3 cut(s)	362, 522, 635
RsaNI	GTAC	3 cut(s)	361, 521, 634
RseI	CAYNNNNRTG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	216
SapI	GCTCTTC	2 cut(s)	219, 248
SaqAI	TTAA	3 cut(s)	12, 420, 447
SatI	GCNGC	7 cut(s)	390, 393, 414, 672, 693, 947, 987
Sau3AI	GATC	7 cut(s)	25, 199, 209, 406, 760, 901, 935
Sau96I	GGNCC	2 cut(s)	171, 266
SchI	GAGTC	5 cut(s)	11, 94, 338, 611, 831
ScrFI	CCNGG	2 cut(s)	127, 159
SfaNI	GCATC	2 cut(s)	427, 998
Sfr274I	CTCGAG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	171, 266
SlaI	CTCGAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	396, 839
SmoI	CTYRAG	2 cut(s)	396, 839
Sse9I	AATT	6 cut(s)	130, 422, 448, 493, 617, 727
SsiI	CCGC	5 cut(s)	207, 242, 413, 692, 1024
SspMI	CTAG	3 cut(s)	675, 809, 911
StyD4I	CCNGG	2 cut(s)	125, 157
TaaI	ACNGT	6 cut(s)	47, 108, 347, 788, 931, 959
TaiI	ACGT	7 cut(s)	72, 101, 265, 280, 305, 610, 639
TaqI	TCGA	6 cut(s)	217, 292, 397, 409, 453, 970
TasI	AATT	6 cut(s)	130, 422, 448, 493, 617, 727
TatI	WGTACW	2 cut(s)	360, 520
TauI	GCSGC	2 cut(s)	416, 695
TfiI	GAWTC	4 cut(s)	38, 55, 815, 999
Tru1I	TTAA	3 cut(s)	12, 420, 447
Tru9I	TTAA	3 cut(s)	12, 420, 447
TscAI	CASTG	2 cut(s)	385, 544
TseFI	GTSAC	3 cut(s)	121, 330, 603
TseI	GCWGC	5 cut(s)	389, 392, 671, 946, 986
Tsp45I	GTSAC	3 cut(s)	121, 330, 603
TspRI	CASTG	2 cut(s)	385, 544
Tth111I	GACNNNGTC	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	171, 266
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	3 cut(s)	130, 422, 493
XceI	RCATGY	2 cut(s)	389, 521
XhoI	CTCGAG	1 cut(s)	396
XmiI	GTMKAC	2 cut(s)	217, 744
XspI	CTAG	3 cut(s)	675, 809, 911
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.