Rorug05G0341100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003382
Physical Location & Seq
Forward (+)
41625870 .. 41626193
324 bp
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UTR
Exon/CDS
Intron
Rorug05G0341100.1

Sequence Viewer

Length: 324 bp
ATGAGGTTTAATAGTATTCTTTACTTACTGCCCTTTCTGCTCAATGAACATGAACTGTTATGTAATTGTACTACTTTGCAGGGGTCACTAGCGTTCAAGCTAGAATTTCAATATTGCAGATGCAGCAGTGGCTTTGGAAACGCAGTCACAAAAAAGTTCACTGCTAACGTAACTTCTGGTACTTTGGAGATCCGTTTATTCTGGGCTGGGAAAGGGACAACAGGTGTTCCTTACAGAGGAGACTATGGTCCTCTTATATCAGCTATCTCTATAGATTCTGGTATGTCTTTTTACGCTATAAGCTCTCTGACCTTCTTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

8.32

Isoelectric Point (pI)

25.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 44 - 89 2.6e-06 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 2 cut(s) 70, 181
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 97, 110
AluBI AGCT 3 cut(s) 100, 263, 303
AluI AGCT 3 cut(s) 100, 263, 303
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 89, 101
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 189
BspPI GGATC 1 cut(s) 184
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 234
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 37, 123, 129
BstPAI GACNNNNGTC 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtsI GCAGTG 2 cut(s) 133, 159
BtsIMutI CAGTG 2 cut(s) 133, 159
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 69, 180
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 100, 132, 206, 263, 303
CviKI_1 RGCY 5 cut(s) 100, 132, 206, 263, 303
CviQI GTAC 2 cut(s) 69, 180
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 234
FaeI CATG 1 cut(s) 53
FaiI YATR 7 cut(s) 51, 61, 246, 257, 272, 284, 299
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 2 cut(s) 89, 101
GluI GCNGC 1 cut(s) 124
GsaI CCCAGC 1 cut(s) 210
Hin1II CATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 79, 117, 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 123, 129
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 6 cut(s) 65, 162, 187, 192, 207, 264
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 89, 101
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 84, 145, 169
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 1 cut(s) 307
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 64, 104
MnlI CCTC 2 cut(s) 230, 261
MseI TTAA 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 37, 123, 129
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 84, 145
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 2 cut(s) 70, 181
RsaNI GTAC 2 cut(s) 69, 180
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 248
SetI ASST 7 cut(s) 8, 102, 171, 226, 265, 305, 314
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 248
Sse9I AATT 2 cut(s) 64, 104
SspI AATATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 89, 101
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 171
TasI AATT 2 cut(s) 64, 104
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 133, 166
TseFI GTSAC 2 cut(s) 84, 145
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 2 cut(s) 84, 145
TspDTI ATGAA 2 cut(s) 60, 66
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 133, 166
VpaK11BI GGWCC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 104
XspI CTAG 2 cut(s) 89, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.