transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT5G67180 AT5G67180 AT5G67180 |
| fragaria_vesca | FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 |
| malus_domestica | MD03G1107900.v1.1 MD11G1121200.v1.1 |
| prunus_persica | Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1 |
| pyrus_communis | pycom03g08790 pycom11g10230 |
| rosa_chinensis | RchiOBHm_Chr5g0061491 RchiOBHm_Chr5g0061501 |
| rosa_laevigata | RLG00000035482 |
| rosa_multiflora | Rmu_sc0006126.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00019170 |
| rosa_rugosa | Rorug05G0341000 Rorug05G0341100 Rorug05G0341200 |
| rosa_samantha | Rh5AG403200 Rh5BG415600 Rh5CG440300 Rh5DG430100 |
| rosa_wichuraiana | Rw5G037920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 227, 230 |
| AatII | GACGTC | 3 cut(s) | 48, 86, 231 |
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccII | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| AclI | AACGTT | 1 cut(s) | 21 |
| AclWI | GGATC | 3 cut(s) | 15, 1112, 1243 |
| AcoI | YGGCCR | 2 cut(s) | 278, 1416 |
| AcsI | RAATTY | 3 cut(s) | 673, 689, 985 |
| AcuI | CTGAAG | 1 cut(s) | 1028 |
| AcyI | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| AdeI | CACNNNGTG | 1 cut(s) | 1099 |
| AfaI | GTAC | 2 cut(s) | 470, 718 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 260, 287, 456, 1010, 1130, 1255 |
| AflIII | ACRYGT | 1 cut(s) | 111 |
| AgsI | TTSAA | 3 cut(s) | 178, 271, 380 |
| AjiI | CACGTC | 1 cut(s) | 1069 |
| AjnI | CCWGG | 2 cut(s) | 280, 449 |
| AleI | CACNNNNGTG | 2 cut(s) | 768, 1165 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 326, 358 |
| AluBI | AGCT | 7 cut(s) | 337, 404, 462, 738, 785, 851, 1334 |
| AluI | AGCT | 7 cut(s) | 337, 404, 462, 738, 785, 851, 1334 |
| Alw21I | GWGCWC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| Alw26I | GTCTC | 1 cut(s) | 459 |
| Alw44I | GTGCAC | 2 cut(s) | 695, 1070 |
| AlwI | GGATC | 3 cut(s) | 15, 1112, 1243 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1349 |
| Ama87I | CYCGRG | 1 cut(s) | 727 |
| AoxI | GGCC | 3 cut(s) | 278, 1057, 1416 |
| ApaLI | GTGCAC | 2 cut(s) | 695, 1070 |
| ApoI | RAATTY | 3 cut(s) | 673, 689, 985 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspLEI | GCGC | 4 cut(s) | 149, 359, 409, 593 |
| AspS9I | GGNCC | 2 cut(s) | 446, 1058 |
| AsuHPI | GGTGA | 6 cut(s) | 328, 472, 895, 1043, 1145, 1398 |
| AvaI | CYCGRG | 1 cut(s) | 727 |
| AvaII | GGWCC | 1 cut(s) | 446 |
| BaeGI | GKGCMC | 2 cut(s) | 699, 1074 |
| BalI | TGGCCA | 1 cut(s) | 280 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| BauI | CACGAG | 2 cut(s) | 133, 348 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| BccI | CCATC | 6 cut(s) | 325, 498, 771, 956, 1081, 1164 |
| BceAI | ACGGC | 2 cut(s) | 149, 295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 575, 609 |
| BciT130I | CCWGG | 2 cut(s) | 282, 451 |
| BcoDI | GTCTC | 1 cut(s) | 459 |
| BfaI | CTAG | 3 cut(s) | 576, 1136, 1185 |
| BfmI | CTRYAG | 2 cut(s) | 487, 1305 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BmcAI | AGTACT | 1 cut(s) | 718 |
| Bme1390I | CCNGG | 2 cut(s) | 282, 451 |
| Bme18I | GGWCC | 1 cut(s) | 446 |
| BmeT110I | CYCGRG | 1 cut(s) | 727 |
| BmgBI | CACGTC | 1 cut(s) | 1069 |
| BmgT120I | GGNCC | 2 cut(s) | 446, 1058 |
| BmiI | GGNNCC | 2 cut(s) | 61, 448 |
| BmrFI | CCNGG | 2 cut(s) | 282, 451 |
| BmrI | ACTGGG | 1 cut(s) | 1264 |
| BmsI | GCATC | 2 cut(s) | 607, 1319 |
| BmuI | ACTGGG | 1 cut(s) | 1264 |
| BoxI | GACNNNNGTC | 1 cut(s) | 451 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 3 cut(s) | 282, 724, 1326 |
| BpuEI | CTTGAG | 2 cut(s) | 176, 1224 |
| BsaBI | GATNNNNATC | 4 cut(s) | 12, 508, 966, 1155 |
| BsaHI | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 5 cut(s) | 240, 281, 449, 802, 1413 |
| BsaWI | WCCGGW | 1 cut(s) | 253 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 122, 152, 326, 356 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 260, 287, 456, 1010, 1130, 1255 |
| Bse1I | ACTGG | 4 cut(s) | 265, 502, 724, 1259 |
| Bse8I | GATNNNNATC | 4 cut(s) | 12, 508, 966, 1155 |
| BseBI | CCWGG | 2 cut(s) | 282, 451 |
| BseDI | CCNNGG | 5 cut(s) | 240, 281, 449, 802, 1413 |
| BseGI | GGATG | 3 cut(s) | 658, 1092, 1156 |
| BseJI | GATNNNNATC | 4 cut(s) | 12, 508, 966, 1155 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 260, 287, 456, 1010, 1130, 1255 |
| BseMII | CTCAG | 3 cut(s) | 479, 652, 936 |
| BseNI | ACTGG | 4 cut(s) | 265, 502, 724, 1259 |
| BseRI | GAGGAG | 1 cut(s) | 624 |
| BseSI | GKGCMC | 2 cut(s) | 699, 1074 |
| Bsh1236I | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| Bsh1285I | CGRYCG | 1 cut(s) | 589 |
| BshFI | GGCC | 3 cut(s) | 280, 1059, 1418 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsiEI | CGRYCG | 1 cut(s) | 589 |
| BsiHKAI | GWGCWC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| BsiHKCI | CYCGRG | 1 cut(s) | 727 |
| BsiSI | CCGG | 2 cut(s) | 254, 360 |
| BslFI | GGGAC | 4 cut(s) | 94, 215, 536, 807 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 260, 287, 456, 1010, 1130, 1255 |
| BsmAI | GTCTC | 1 cut(s) | 459 |
| BsmFI | GGGAC | 4 cut(s) | 94, 215, 536, 807 |
| BsnI | GGCC | 3 cut(s) | 280, 1059, 1418 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| BsoBI | CYCGRG | 1 cut(s) | 727 |
| Bsp1286I | GDGCHC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| Bsp143I | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| BspANI | GGCC | 3 cut(s) | 280, 1059, 1418 |
| BspCNI | CTCAG | 3 cut(s) | 478, 651, 937 |
| BspFNI | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| BspLI | GGNNCC | 2 cut(s) | 61, 448 |
| BspMAI | CTGCAG | 1 cut(s) | 1309 |
| BspPI | GGATC | 3 cut(s) | 15, 1112, 1243 |
| BspQI | GCTCTTC | 2 cut(s) | 428, 1214 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BsrI | ACTGG | 4 cut(s) | 265, 502, 724, 1259 |
| BssECI | CCNNGG | 5 cut(s) | 240, 281, 449, 802, 1413 |
| BssMI | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| BssNI | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| BssSI | CACGAG | 2 cut(s) | 133, 348 |
| BssT1I | CCWWGG | 1 cut(s) | 240 |
| Bst2BI | CACGAG | 2 cut(s) | 133, 348 |
| Bst2UI | CCWGG | 2 cut(s) | 282, 451 |
| Bst4CI | ACNGT | 5 cut(s) | 249, 527, 798, 1175, 1296 |
| Bst6I | CTCTTC | 4 cut(s) | 207, 304, 428, 1214 |
| BstACI | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 703 |
| BstC8I | GCNNGC | 2 cut(s) | 145, 426 |
| BstDEI | CTNAG | 4 cut(s) | 465, 638, 681, 945 |
| BstDSI | CCRYGG | 1 cut(s) | 1413 |
| BstEII | GGTNACC | 3 cut(s) | 478, 901, 1279 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| BstF5I | GGATG | 3 cut(s) | 658, 1092, 1156 |
| BstFNI | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 4 cut(s) | 149, 359, 409, 593 |
| BstKTI | GATC | 7 cut(s) | 10, 174, 658, 982, 1120, 1153, 1238 |
| BstMAI | GTCTC | 1 cut(s) | 459 |
| BstMBI | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| BstMCI | CGRYCG | 1 cut(s) | 589 |
| BstNI | CCWGG | 2 cut(s) | 282, 451 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 451 |
| BstPI | GGTNACC | 3 cut(s) | 478, 901, 1279 |
| BstSCI | CCNGG | 2 cut(s) | 280, 449 |
| BstSFI | CTRYAG | 2 cut(s) | 487, 1305 |
| BstSLI | GKGCMC | 2 cut(s) | 699, 1074 |
| BstUI | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstX2I | RGATCY | 2 cut(s) | 7, 1235 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1167 |
| BstYI | RGATCY | 2 cut(s) | 7, 1235 |
| BsuRI | GGCC | 3 cut(s) | 280, 1059, 1418 |
| BtgI | CCRYGG | 1 cut(s) | 1413 |
| BtgZI | GCGATG | 1 cut(s) | 291 |
| BtrI | CACGTC | 1 cut(s) | 1069 |
| BtsCI | GGATG | 3 cut(s) | 658, 1092, 1156 |
| BtsI | GCAGTG | 1 cut(s) | 558 |
| BtsIMutI | CAGTG | 4 cut(s) | 258, 558, 646, 1292 |
| Cac8I | GCNNGC | 2 cut(s) | 145, 426 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1349 |
| CfoI | GCGC | 4 cut(s) | 149, 359, 409, 593 |
| Cfr13I | GGNCC | 2 cut(s) | 446, 1058 |
| Cfr42I | CCGCGG | 1 cut(s) | 1416 |
| CseI | GACGC | 4 cut(s) | 102, 119, 170, 695 |
| Csp6I | GTAC | 2 cut(s) | 469, 717 |
| CviAII | CATG | 2 cut(s) | 566, 1271 |
| CviQI | GTAC | 2 cut(s) | 469, 717 |
| DdeI | CTNAG | 4 cut(s) | 465, 638, 681, 945 |
| DpnI | GATC | 7 cut(s) | 9, 173, 657, 981, 1119, 1152, 1237 |
| DpnII | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| DraI | TTTAAA | 1 cut(s) | 1129 |
| DraIII | CACNNNGTG | 1 cut(s) | 1099 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 227, 230 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 227, 230 |
| EaeI | YGGCCR | 2 cut(s) | 278, 1416 |
| Eam1104I | CTCTTC | 4 cut(s) | 207, 304, 428, 1214 |
| EarI | CTCTTC | 4 cut(s) | 207, 304, 428, 1214 |
| Ecl136II | GAGCTC | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 1 cut(s) | 240 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco32I | GATATC | 2 cut(s) | 625, 996 |
| Eco47I | GGWCC | 1 cut(s) | 446 |
| Eco53kI | GAGCTC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 1 cut(s) | 1028 |
| Eco88I | CYCGRG | 1 cut(s) | 727 |
| Eco91I | GGTNACC | 3 cut(s) | 478, 901, 1279 |
| EcoICRI | GAGCTC | 1 cut(s) | 462 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 446 |
| EcoO65I | GGTNACC | 3 cut(s) | 478, 901, 1279 |
| EcoRI | GAATTC | 1 cut(s) | 689 |
| EcoRII | CCWGG | 2 cut(s) | 280, 449 |
| EcoRV | GATATC | 2 cut(s) | 625, 996 |
| EcoT14I | CCWWGG | 1 cut(s) | 240 |
| EcoT22I | ATGCAT | 1 cut(s) | 1272 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| ErhI | CCWWGG | 1 cut(s) | 240 |
| FaeI | CATG | 2 cut(s) | 569, 1274 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1026, 1058 |
| FaqI | GGGAC | 4 cut(s) | 94, 215, 536, 807 |
| FatI | CATG | 2 cut(s) | 565, 1270 |
| FauNDI | CATATG | 1 cut(s) | 925 |
| FokI | GGATG | 3 cut(s) | 665, 1099, 1143 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| FspBI | CTAG | 3 cut(s) | 576, 1136, 1185 |
| GlaI | GCGC | 4 cut(s) | 148, 358, 408, 592 |
| GsuI | CTGGAG | 3 cut(s) | 282, 724, 1326 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HaeIII | GGCC | 3 cut(s) | 280, 1059, 1418 |
| HapII | CCGG | 2 cut(s) | 254, 360 |
| HgaI | GACGC | 4 cut(s) | 102, 119, 170, 695 |
| HhaI | GCGC | 4 cut(s) | 149, 359, 409, 593 |
| Hin1I | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| Hin1II | CATG | 2 cut(s) | 569, 1274 |
| Hin6I | GCGC | 4 cut(s) | 147, 357, 407, 591 |
| HinP1I | GCGC | 4 cut(s) | 147, 357, 407, 591 |
| HinfI | GANTC | 7 cut(s) | 50, 74, 131, 293, 325, 509, 1320 |
| HpaII | CCGG | 2 cut(s) | 254, 360 |
| HphI | GGTGA | 6 cut(s) | 328, 472, 895, 1043, 1145, 1398 |
| Hpy166II | GTNNAC | 5 cut(s) | 345, 697, 1072, 1102, 1357 |
| Hpy188I | TCNGA | 8 cut(s) | 18, 330, 459, 608, 660, 806, 946, 1150 |
| Hpy188III | TCNNGA | 7 cut(s) | 169, 235, 727, 741, 977, 1202, 1317 |
| Hpy8I | GTNNAC | 5 cut(s) | 345, 697, 1072, 1102, 1357 |
| Hpy99I | CGWCG | 9 cut(s) | 47, 50, 113, 131, 227, 230, 233, 236, 711 |
| HpyAV | CCTTC | 5 cut(s) | 493, 885, 923, 1022, 1028 |
| HpyCH4III | ACNGT | 5 cut(s) | 249, 527, 798, 1175, 1296 |
| HpyCH4IV | ACGT | 5 cut(s) | 21, 45, 83, 228, 1068 |
| HpyCH4V | TGCA | 6 cut(s) | 697, 854, 1072, 1229, 1270, 1307 |
| HpyF3I | CTNAG | 4 cut(s) | 465, 638, 681, 945 |
| HpySE526I | ACGT | 5 cut(s) | 21, 45, 83, 228, 1068 |
| Hsp92I | GRCGYC | 4 cut(s) | 45, 83, 162, 228 |
| Hsp92II | CATG | 2 cut(s) | 569, 1274 |
| HspAI | GCGC | 4 cut(s) | 147, 357, 407, 591 |
| KspI | CCGCGG | 1 cut(s) | 1416 |
| Kzo9I | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| LguI | GCTCTTC | 2 cut(s) | 428, 1214 |
| LmnI | GCTCC | 6 cut(s) | 143, 334, 459, 743, 1090, 1345 |
| LweI | GCATC | 2 cut(s) | 607, 1319 |
| MaeI | CTAG | 3 cut(s) | 576, 1136, 1185 |
| MaeII | ACGT | 5 cut(s) | 21, 45, 83, 228, 1068 |
| MaeIII | GTNAC | 8 cut(s) | 166, 235, 256, 478, 754, 901, 1187, 1279 |
| MalI | GATC | 7 cut(s) | 9, 173, 657, 981, 1119, 1152, 1237 |
| MboI | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| MfeI | CAATTG | 1 cut(s) | 274 |
| MflI | RGATCY | 2 cut(s) | 7, 1235 |
| MhlI | GDGCHC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| MlsI | TGGCCA | 1 cut(s) | 280 |
| MluCI | AATT | 5 cut(s) | 274, 628, 673, 689, 985 |
| MluI | ACGCGT | 1 cut(s) | 111 |
| MluNI | TGGCCA | 1 cut(s) | 280 |
| MlyI | GAGTC | 3 cut(s) | 83, 125, 302 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| Mox20I | TGGCCA | 1 cut(s) | 280 |
| Mph1103I | ATGCAT | 1 cut(s) | 1272 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MscI | TGGCCA | 1 cut(s) | 280 |
| MseI | TTAA | 4 cut(s) | 12, 600, 1106, 1128 |
| MslI | CAYNNNNRTG | 4 cut(s) | 65, 768, 1165, 1435 |
| Msp20I | TGGCCA | 1 cut(s) | 280 |
| MspA1I | CMGCKG | 3 cut(s) | 404, 1349, 1415 |
| MspI | CCGG | 2 cut(s) | 254, 360 |
| MspR9I | CCNGG | 2 cut(s) | 282, 451 |
| MunI | CAATTG | 1 cut(s) | 274 |
| MvaI | CCWGG | 2 cut(s) | 282, 451 |
| MvnI | CGCG | 4 cut(s) | 113, 147, 591, 1415 |
| NdeI | CATATG | 1 cut(s) | 925 |
| NdeII | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| NlaIII | CATG | 2 cut(s) | 569, 1274 |
| NlaIV | GGNNCC | 2 cut(s) | 61, 448 |
| NmeAIII | GCCGAG | 1 cut(s) | 942 |
| NmuCI | GTSAC | 5 cut(s) | 166, 235, 256, 478, 901 |
| NsiI | ATGCAT | 1 cut(s) | 1272 |
| OliI | CACNNNNGTG | 2 cut(s) | 768, 1165 |
| PaeR7I | CTCGAG | 1 cut(s) | 727 |
| PciSI | GCTCTTC | 2 cut(s) | 428, 1214 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 89, 228, 231 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 4 cut(s) | 50, 325, 509, 1320 |
| PflFI | GACNNNGTC | 3 cut(s) | 164, 227, 230 |
| PleI | GAGTC | 3 cut(s) | 82, 125, 301 |
| PpsI | GAGTC | 3 cut(s) | 82, 125, 301 |
| PpuMI | RGGWCCY | 1 cut(s) | 446 |
| PshAI | GACNNNNGTC | 1 cut(s) | 451 |
| Psp124BI | GAGCTC | 1 cut(s) | 464 |
| Psp1406I | AACGTT | 1 cut(s) | 21 |
| Psp5II | RGGWCCY | 1 cut(s) | 446 |
| Psp6I | CCWGG | 2 cut(s) | 280, 449 |
| PspEI | GGTNACC | 3 cut(s) | 478, 901, 1279 |
| PspGI | CCWGG | 2 cut(s) | 280, 449 |
| PspN4I | GGNNCC | 2 cut(s) | 61, 448 |
| PspPI | GGNCC | 2 cut(s) | 446, 1058 |
| PspPPI | RGGWCCY | 1 cut(s) | 446 |
| PstI | CTGCAG | 1 cut(s) | 1309 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1349 |
| PsuI | RGATCY | 2 cut(s) | 7, 1235 |
| PsyI | GACNNNGTC | 3 cut(s) | 164, 227, 230 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RsaI | GTAC | 2 cut(s) | 470, 718 |
| RsaNI | GTAC | 2 cut(s) | 469, 717 |
| RseI | CAYNNNNRTG | 4 cut(s) | 65, 768, 1165, 1435 |
| SacI | GAGCTC | 1 cut(s) | 464 |
| SacII | CCGCGG | 1 cut(s) | 1416 |
| SapI | GCTCTTC | 2 cut(s) | 428, 1214 |
| SaqAI | TTAA | 4 cut(s) | 12, 600, 1106, 1128 |
| Sau3AI | GATC | 7 cut(s) | 7, 171, 655, 979, 1117, 1150, 1235 |
| Sau96I | GGNCC | 2 cut(s) | 446, 1058 |
| ScaI | AGTACT | 1 cut(s) | 718 |
| SchI | GAGTC | 3 cut(s) | 83, 125, 302 |
| ScrFI | CCNGG | 2 cut(s) | 282, 451 |
| SduI | GDGCHC | 6 cut(s) | 140, 464, 699, 923, 1074, 1095 |
| SfaNI | GCATC | 2 cut(s) | 607, 1319 |
| SfcI | CTRYAG | 2 cut(s) | 487, 1305 |
| Sfr274I | CTCGAG | 1 cut(s) | 727 |
| Sfr303I | CCGCGG | 1 cut(s) | 1416 |
| SgrBI | CCGCGG | 1 cut(s) | 1416 |
| SinI | GGWCC | 1 cut(s) | 446 |
| SlaI | CTCGAG | 1 cut(s) | 727 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 65, 768, 1165, 1435 |
| SmlI | CTYRAG | 3 cut(s) | 191, 727, 1239 |
| SmoI | CTYRAG | 3 cut(s) | 191, 727, 1239 |
| Sse9I | AATT | 5 cut(s) | 274, 628, 673, 689, 985 |
| SspMI | CTAG | 3 cut(s) | 576, 1136, 1185 |
| SstI | GAGCTC | 1 cut(s) | 464 |
| StyD4I | CCNGG | 2 cut(s) | 280, 449 |
| StyI | CCWWGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 5 cut(s) | 249, 527, 798, 1175, 1296 |
| TaiI | ACGT | 5 cut(s) | 24, 48, 86, 231, 1071 |
| TaqI | TCGA | 5 cut(s) | 48, 728, 775, 787, 834 |
| TasI | AATT | 5 cut(s) | 274, 628, 673, 689, 985 |
| TatI | WGTACW | 2 cut(s) | 468, 716 |
| TauI | GCSGC | 9 cut(s) | 60, 152, 412, 415, 418, 575, 1349, 1415, 1418 |
| TfiI | GAWTC | 4 cut(s) | 50, 325, 509, 1320 |
| Tru1I | TTAA | 4 cut(s) | 12, 600, 1106, 1128 |
| Tru9I | TTAA | 4 cut(s) | 12, 600, 1106, 1128 |
| TscAI | CASTG | 4 cut(s) | 265, 565, 646, 1299 |
| TseFI | GTSAC | 5 cut(s) | 166, 235, 256, 478, 901 |
| Tsp45I | GTSAC | 5 cut(s) | 166, 235, 256, 478, 901 |
| TspDTI | ATGAA | 4 cut(s) | 291, 683, 942, 972 |
| TspGWI | ACGGA | 2 cut(s) | 85, 219 |
| TspRI | CASTG | 4 cut(s) | 265, 565, 646, 1299 |
| Tth111I | GACNNNGTC | 3 cut(s) | 164, 227, 230 |
| VneI | GTGCAC | 2 cut(s) | 695, 1070 |
| VpaK11BI | GGWCC | 1 cut(s) | 446 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| XapI | RAATTY | 3 cut(s) | 673, 689, 985 |
| XhoI | CTCGAG | 1 cut(s) | 727 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 3 cut(s) | 576, 1136, 1185 |
| ZraI | GACGTC | 3 cut(s) | 46, 84, 229 |
| ZrmI | AGTACT | 1 cut(s) | 718 |
| Zsp2I | ATGCAT | 1 cut(s) | 1272 |