Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003382

Physical Location & Seq

Genomic Coordinates Reverse (-)

66993186 .. 66995352

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATTACACTCTACCTGACACTGAATTTATTACCCTAAATTCTCAACCTCATTGGGTTCCATCCAACACTTCTCTCCCTTTTGATTTTTCTGGAATTAGGGCTTATGACAAGGCAGCTATCAAATGTAATGGAAGGGAAGCTGTCACCAACTTTGAGGCAAGTACTTACGAAGGGGAGATGATATCTGATGCTGTTAATGAAGATGGCAATCACAATCTTGATCTGAATTTGGGAATATCTCCTCCTTCATTTGGTAATGGTCAGAAGCAAGGCGAGGGGCATCTTCAGTTCCATTCTGGCCCTTATGAGGAGCAAAATGGAAAGAATATGAGGATGGTGCCCAATGCAAATGCAACAATGACTGCTTCACCTTTCAGAGGCGTAATAATGACATCAGAGCACCCTCCTTTATGGAATGGTGTATATCCTAGTTTCCTTCCGAATCAGGAAAGAGCAATAGAGAAGAGAATTGCATTAGGATCTCAAGGACCTCCCAATTGGGCTTGGCAAATGCATGGCCAGGTCAGTGCCCCAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTACAGCTACCAGTCCGTCCGCTGCTGTCCTCCCCATAATCCCCTCAAACCCAACCGCCCTCAATCTCTGTTTTACATCTTCAGCCACGGCCGCCCACCATACGTCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

229

Amino Acids

24.75

Weight (kDa)

5.53

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT5G67180 AT5G67180 AT5G67180
fragaria_vesca	FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940
malus_domestica	MD03G1107900.v1.1 MD11G1121200.v1.1
prunus_persica	Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1
pyrus_communis	pycom03g08790 pycom11g10230
rosa_chinensis	RchiOBHm_Chr5g0061491 RchiOBHm_Chr5g0061501
rosa_laevigata	RLG00000035482
rosa_multiflora	Rmu_sc0006126.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019170
rosa_rugosa	Rorug05G0341000 Rorug05G0341100 Rorug05G0341200
rosa_samantha	Rh5AG403200 Rh5BG415600 Rh5CG440300 Rh5DG430100
rosa_wichuraiana	Rw5G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	3 cut(s)	597, 633, 669
AclWI	GGATC	1 cut(s)	490
AcoI	YGGCCR	2 cut(s)	520, 666
AcsI	RAATTY	3 cut(s)	26, 40, 229
AcuI	CTGAAG	2 cut(s)	272, 642
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	254, 310, 380
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	119, 143, 584
AluI	AGCT	3 cut(s)	119, 143, 584
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	3 cut(s)	301, 520, 666
ApeKI	GCWGC	3 cut(s)	116, 557, 599
ApoI	RAATTY	3 cut(s)	26, 40, 229
AspS9I	GGNCC	2 cut(s)	302, 491
AsuHPI	GGTGA	2 cut(s)	139, 363
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	2 cut(s)	345, 535
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	128, 569, 586
BccI	CCATC	3 cut(s)	70, 200, 331
BceAI	ACGGC	1 cut(s)	681
BciT130I	CCWGG	1 cut(s)	524
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	4 cut(s)	117, 558, 600, 669
BlsI	GCNGC	4 cut(s)	118, 559, 601, 670
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	302, 491
BmiI	GGNNCC	2 cut(s)	60, 342
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	181, 292, 569
BpuEI	CTTGAG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 310, 380
Bse1I	ACTGG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	2 cut(s)	62, 342
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	254, 310, 380
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	2 cut(s)	234, 326
BseSI	GKGCMC	2 cut(s)	345, 535
BseX3I	CGGCCG	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	128, 569, 586
Bsh1285I	CGRYCG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	303, 522, 668
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	254, 310, 380
BsnI	GGCC	3 cut(s)	303, 522, 668
Bsp1286I	GDGCHC	3 cut(s)	345, 405, 535
Bsp143I	GATC	2 cut(s)	223, 482
BspACI	CCGC	3 cut(s)	597, 633, 669
BspANI	GGCC	3 cut(s)	303, 522, 668
BspLI	GGNNCC	2 cut(s)	60, 342
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	2 cut(s)	223, 482
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	461
BstDSI	CCRYGG	1 cut(s)	663
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	62, 342
BstKTI	GATC	2 cut(s)	226, 485
BstMBI	GATC	2 cut(s)	223, 482
BstMCI	CGRYCG	1 cut(s)	669
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	2 cut(s)	345, 535
BstV1I	GCAGC	3 cut(s)	128, 569, 586
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BstZI	CGGCCG	1 cut(s)	666
BsuRI	GGCC	3 cut(s)	303, 522, 668
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	62, 342
BtsIMutI	CAGTG	3 cut(s)	21, 535, 542
Cfr13I	GGNCC	2 cut(s)	302, 491
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	518
CviJI	RGCY	9 cut(s)	104, 119, 143, 303, 506, 522, 584, 662, 668
CviKI_1	RGCY	9 cut(s)	104, 119, 143, 303, 506, 522, 584, 662, 668
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	2 cut(s)	225, 484
DpnII	GATC	2 cut(s)	223, 482
EaeI	YGGCCR	2 cut(s)	520, 666
EagI	CGGCCG	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EclXI	CGGCCG	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	491
Eco52I	CGGCCG	1 cut(s)	666
Eco57I	CTGAAG	2 cut(s)	272, 642
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	519
FaeI	CATG	1 cut(s)	521
FaiI	YATR	8 cut(s)	108, 309, 332, 415, 427, 519, 614, 678
FatI	CATG	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	117, 558, 600, 669
FokI	GGATG	2 cut(s)	49, 349
Fsp4HI	GCNGC	4 cut(s)	117, 558, 600, 669
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	4 cut(s)	117, 558, 600, 669
HaeIII	GGCC	3 cut(s)	303, 522, 668
Hin1II	CATG	1 cut(s)	521
HinfI	GANTC	2 cut(s)	445, 570
HphI	GGTGA	2 cut(s)	139, 363
Hpy188I	TCNGA	6 cut(s)	190, 228, 267, 380, 400, 444
Hpy188III	TCNNGA	4 cut(s)	93, 221, 449, 567
HpyAV	CCTTC	4 cut(s)	129, 167, 258, 449
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	5 cut(s)	350, 356, 476, 517, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	1 cut(s)	521
Kzo9I	GATC	2 cut(s)	223, 482
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	30, 78, 285, 434, 509, 536, 552, 601
Lsp1109I	GCAGC	3 cut(s)	128, 569, 586
LweI	GCATC	3 cut(s)	181, 292, 569
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	225, 484
MboI	GATC	2 cut(s)	223, 482
MboII	GAAGA	4 cut(s)	215, 278, 478, 648
MfeI	CAATTG	1 cut(s)	499
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	3 cut(s)	345, 405, 535
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	7 cut(s)	4, 26, 40, 96, 229, 471, 499
MluNI	TGGCCA	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	524
MunI	CAATTG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeII	GATC	2 cut(s)	223, 482
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	2 cut(s)	60, 342
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	445, 570
PkrI	GCNGC	4 cut(s)	118, 559, 601, 670
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	60, 342
PspPI	GGNCC	2 cut(s)	302, 491
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	482
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	117, 558, 600, 669
Sau3AI	GATC	2 cut(s)	223, 482
Sau96I	GGNCC	2 cut(s)	302, 491
ScaI	AGTACT	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	345, 405, 535
SetI	ASST	9 cut(s)	19, 52, 121, 145, 376, 496, 528, 586, 683
SfaNI	GCATC	3 cut(s)	181, 292, 569
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	7 cut(s)	4, 26, 40, 96, 229, 471, 499
SsiI	CCGC	3 cut(s)	597, 633, 669
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	683
TasI	AATT	7 cut(s)	4, 26, 40, 96, 229, 471, 499
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	445, 570
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	28, 535, 549
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	116, 557, 599
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	17, 216, 240
TspGWI	ACGGA	1 cut(s)	582
TspRI	CASTG	3 cut(s)	28, 535, 549
VpaK11BI	GGWCC	1 cut(s)	491
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	3 cut(s)	26, 40, 229
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	166
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.