RchiOBHm_Chr5g0061501

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003382
Physical Location & Seq
Reverse (-)
66995354 .. 66997292
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33787

Sequence Viewer

Length: 858 bp
ATGTTGGATCTTAATCTCAGCGTGGTGGGATCGTCGTCGGAACAAAACGACGTCTTCGTCGTCGGCTCGTTTCCGGAAGGCTCCGGCAGCGCGACGCAAATGGACGAGTCCGGGACGTCCAACTCGTCCGTCGTCAATGCCGACGCCTCCAGCTCCAACGACGACTCGTGCTCCGCACGCGCCACCGTGACGACGTTCAACTTCGATATTCTCAAGGTCGGTGGAGGAGAAGAAGACGACGTCGCTGTGACGAAGGAGCTGTTTCCGGTGAACAGTTGGCCGGGGAAGGGGCAGGGGCAGCAGTACTCGCCGGCATCATCGTCGGCGAGGCACAACTTGATCGAGCTTGGTGGTCCCGCGGAGGTTCAGCAGAAACAGCCACAACCACAACCACCGCCACCGCCACCACAACAACCGCAGGTGAAGAAGAGCAGGAGAGGGCCCAGGTCTCGGAGTTCTCAGTACAGAGGGGTCACTTTCTATAGAAGAACTGGTAGATGGGAATCGCATATTTGGGATTGTGGCAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGATATCAATTACAATCTCAGTGATTATGAGGAGGATATGAAACAGATGAAGAATTTGACCAAGGAAGAATTCGTGCACATACTACGTCGGCAGAGCACTGGTTTCTCGAGGGGGAGCTCAAGATATAGAGGGGTTACACTGCACAAATGTGGTCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

285

Amino Acids

31.45

Weight (kDa)

8.34

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 154 - 202 2.9e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 3 cut(s) 54, 119, 243
Acc36I ACCTGC 1 cut(s) 409
AccII CGCG 3 cut(s) 92, 180, 359
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 6 cut(s) 174, 357, 359, 395, 401, 416
AclWI GGATC 2 cut(s) 15, 37
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 667, 683
AcyI GRCGYC 4 cut(s) 51, 116, 144, 240
AfaI GTAC 2 cut(s) 305, 464
AfiI CCNNNNNNNGG 2 cut(s) 287, 450
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 443
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AleI CACNNNNGTG 1 cut(s) 762
AluBI AGCT 7 cut(s) 153, 259, 346, 587, 732, 779, 845
AluI AGCT 7 cut(s) 153, 259, 346, 587, 732, 779, 845
Alw21I GWGCWC 4 cut(s) 173, 693, 713, 734
Alw26I GTCTC 1 cut(s) 453
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 2 cut(s) 15, 37
Ama87I CYCGRG 1 cut(s) 721
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 278, 440
ApaI GGGCCC 1 cut(s) 444
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 6 cut(s) 87, 298, 563, 566, 587, 845
ApoI RAATTY 2 cut(s) 667, 683
AspLEI GCGC 2 cut(s) 92, 182
AspS9I GGNCC 4 cut(s) 353, 440, 441, 852
AsuC2I CCSGG 2 cut(s) 112, 282
AsuHPI GGTGA 2 cut(s) 280, 433
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 2 cut(s) 353, 852
BaeGI GKGCMC 2 cut(s) 444, 693
BanII GRGCYC 2 cut(s) 444, 734
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 46, 240
Bbv12I GWGCWC 4 cut(s) 173, 693, 713, 734
BbvI GCAGC 6 cut(s) 99, 310, 550, 553, 574, 832
BccI CCATC 1 cut(s) 492
BcgI CGANNNNNNTGC 4 cut(s) 303, 337, 569, 603
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 2 cut(s) 112, 282
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 6 cut(s) 88, 299, 564, 567, 588, 846
BlsI GCNGC 6 cut(s) 89, 300, 565, 568, 589, 847
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 112, 282, 445
Bme18I GGWCC 2 cut(s) 353, 852
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 4 cut(s) 353, 440, 441, 852
BmiI GGNNCC 3 cut(s) 82, 355, 442
BmrFI CCNGG 3 cut(s) 112, 282, 445
BmsI GCATC 2 cut(s) 323, 601
BpiI GAAGAC 2 cut(s) 46, 240
BpmI CTGGAG 1 cut(s) 133
BpuEI CTTGAG 2 cut(s) 197, 718
BpuMI CCSGG 2 cut(s) 112, 282
BsaBI GATNNNNATC 2 cut(s) 12, 502
BsaHI GRCGYC 4 cut(s) 51, 116, 144, 240
BsaI GGTCTC 1 cut(s) 453
BsaJI CCNNGG 5 cut(s) 281, 357, 443, 675, 796
BsaWI WCCGGW 2 cut(s) 73, 265
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 450
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 496, 718
Bse8I GATNNNNATC 2 cut(s) 12, 502
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 5 cut(s) 281, 357, 443, 675, 796
BseJI GATNNNNATC 2 cut(s) 12, 502
BseLI CCNNNNNNNGG 2 cut(s) 287, 450
BseMII CTCAG 3 cut(s) 31, 473, 646
BseNI ACTGG 2 cut(s) 496, 718
BseRI GAGGAG 2 cut(s) 240, 659
BseSI GKGCMC 2 cut(s) 444, 693
BseXI GCAGC 6 cut(s) 99, 310, 550, 553, 574, 832
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 3 cut(s) 92, 180, 359
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 2 cut(s) 280, 442
BsiEI CGRYCG 1 cut(s) 583
BsiHKAI GWGCWC 4 cut(s) 173, 693, 713, 734
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 6 cut(s) 74, 84, 111, 266, 281, 311
BslFI GGGAC 2 cut(s) 127, 339
BslI CCNNNNNNNGG 2 cut(s) 287, 450
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 127, 339
BsnI GGCC 2 cut(s) 280, 442
Bso31I GGTCTC 1 cut(s) 453
BsoBI CYCGRG 1 cut(s) 721
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 5 cut(s) 173, 444, 693, 713, 734
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 7, 29, 339, 580
BspACI CCGC 6 cut(s) 174, 357, 359, 395, 401, 416
BspANI GGCC 2 cut(s) 280, 442
BspCNI CTCAG 3 cut(s) 30, 472, 645
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 3 cut(s) 92, 180, 359
BspLI GGNNCC 3 cut(s) 82, 355, 442
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 2 cut(s) 15, 37
BspQI GCTCTTC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 2 cut(s) 496, 718
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 5 cut(s) 281, 357, 443, 675, 796
BssMI GATC 4 cut(s) 7, 29, 339, 580
BssNI GRCGYC 4 cut(s) 51, 116, 144, 240
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 2 cut(s) 675, 796
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 187, 275, 833
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 4 cut(s) 51, 116, 144, 240
BstC8I GCNNGC 2 cut(s) 178, 312
BstDEI CTNAG 3 cut(s) 17, 459, 632
BstDSI CCRYGG 1 cut(s) 357
BstFNI CGCG 3 cut(s) 92, 180, 359
BstHHI GCGC 2 cut(s) 92, 182
BstKTI GATC 4 cut(s) 10, 32, 342, 583
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 4 cut(s) 7, 29, 339, 580
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 7 cut(s) 87, 177, 298, 307, 376, 563, 572
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 3 cut(s) 110, 280, 443
BstSFI CTRYAG 1 cut(s) 481
BstSLI GKGCMC 2 cut(s) 444, 693
BstUI CGCG 3 cut(s) 92, 180, 359
BstV1I GCAGC 6 cut(s) 99, 310, 550, 553, 574, 832
BstV2I GAAGAC 2 cut(s) 46, 240
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 280, 442
BtgI CCRYGG 1 cut(s) 357
BtsI GCAGTG 2 cut(s) 552, 752
BtsIMutI CAGTG 5 cut(s) 552, 640, 711, 752, 838
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 178, 312
CfoI GCGC 2 cut(s) 92, 182
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 4 cut(s) 353, 440, 441, 852
Cfr42I CCGCGG 1 cut(s) 360
CseI GACGC 2 cut(s) 103, 152
Csp6I GTAC 2 cut(s) 304, 463
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 1 cut(s) 560
CviQI GTAC 2 cut(s) 304, 463
DdeI CTNAG 3 cut(s) 17, 459, 632
DpnI GATC 4 cut(s) 9, 31, 341, 582
DpnII GATC 4 cut(s) 7, 29, 339, 580
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 732
Eco130I CCWWGG 2 cut(s) 675, 796
Eco24I GRGCYC 2 cut(s) 444, 734
Eco31I GGTCTC 1 cut(s) 453
Eco32I GATATC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 353, 852
Eco53kI GAGCTC 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 732
EcoO109I RGGNCCY 2 cut(s) 440, 852
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 675, 796
EcoT38I GRGCYC 2 cut(s) 444, 734
ErhI CCWWGG 2 cut(s) 675, 796
FaeI CATG 1 cut(s) 563
FaqI GGGAC 2 cut(s) 127, 339
FatI CATG 1 cut(s) 559
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 6 cut(s) 88, 299, 564, 567, 588, 846
FriOI GRGCYC 2 cut(s) 444, 734
Fsp4HI GCNGC 6 cut(s) 88, 299, 564, 567, 588, 846
FspBI CTAG 1 cut(s) 570
GlaI GCGC 2 cut(s) 91, 181
GluI GCNGC 6 cut(s) 88, 299, 564, 567, 588, 846
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 280, 442
HapII CCGG 6 cut(s) 74, 84, 111, 266, 281, 311
HgaI GACGC 2 cut(s) 103, 152
HhaI GCGC 2 cut(s) 92, 182
Hin1I GRCGYC 4 cut(s) 51, 116, 144, 240
Hin1II CATG 1 cut(s) 563
Hin6I GCGC 2 cut(s) 90, 180
HinP1I GCGC 2 cut(s) 90, 180
HinfI GANTC 3 cut(s) 107, 164, 503
HpaII CCGG 6 cut(s) 74, 84, 111, 266, 281, 311
HphI GGTGA 2 cut(s) 280, 433
Hpy166II GTNNAC 2 cut(s) 271, 691
Hpy188I TCNGA 2 cut(s) 40, 453
Hpy188III TCNNGA 3 cut(s) 74, 721, 735
Hpy8I GTNNAC 2 cut(s) 271, 691
HpyAV CCTTC 3 cut(s) 71, 247, 280
HpyCH4III ACNGT 3 cut(s) 187, 275, 833
HpyCH4IV ACGT 5 cut(s) 51, 116, 194, 240, 700
HpyCH4V TGCA 3 cut(s) 691, 757, 848
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 177, 298, 307, 376, 563, 572
HpyF3I CTNAG 3 cut(s) 17, 459, 632
HpySE526I ACGT 5 cut(s) 51, 116, 194, 240, 700
Hsp92I GRCGYC 4 cut(s) 51, 116, 144, 240
Hsp92II CATG 1 cut(s) 563
HspAI GCGC 2 cut(s) 90, 180
Kpn2I TCCGGA 1 cut(s) 73
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 4 cut(s) 7, 29, 339, 580
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 5 cut(s) 86, 158, 176, 256, 729
Lsp1109I GCAGC 6 cut(s) 99, 310, 550, 553, 574, 832
LweI GCATC 2 cut(s) 323, 601
MaeI CTAG 1 cut(s) 570
MaeII ACGT 5 cut(s) 51, 116, 194, 240, 700
MaeIII GTNAC 4 cut(s) 187, 247, 472, 748
MalI GATC 4 cut(s) 9, 31, 341, 582
MboI GATC 4 cut(s) 7, 29, 339, 580
MboII GAAGA 8 cut(s) 46, 242, 245, 436, 439, 498, 676, 692
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 5 cut(s) 173, 444, 693, 713, 734
MluCI AATT 4 cut(s) 622, 667, 683, 791
MlyI GAGTC 2 cut(s) 116, 158
MmeI TCCRAC 3 cut(s) 18, 144, 180
MroI TCCGGA 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 2 cut(s) 12, 594
MslI CAYNNNNRTG 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 6 cut(s) 74, 84, 111, 266, 281, 311
MspR9I CCNGG 3 cut(s) 112, 282, 445
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 3 cut(s) 92, 180, 359
MwoI GCNNNNNNNGC 7 cut(s) 87, 177, 298, 307, 376, 563, 572
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 2 cut(s) 112, 282
NdeII GATC 4 cut(s) 7, 29, 339, 580
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 1 cut(s) 563
NlaIV GGNNCC 3 cut(s) 82, 355, 442
NmuCI GTSAC 3 cut(s) 187, 247, 472
OliI CACNNNNGTG 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 57, 122, 138
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 503
PflFI GACNNNGTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 6 cut(s) 89, 300, 565, 568, 589, 847
Ple19I CGATCG 1 cut(s) 583
PleI GAGTC 2 cut(s) 115, 158
PpsI GAGTC 2 cut(s) 115, 158
PpuMI RGGWCCY 1 cut(s) 852
Psp124BI GAGCTC 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 3 cut(s) 82, 355, 442
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 4 cut(s) 353, 440, 441, 852
PspPPI RGGWCCY 1 cut(s) 852
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 239
PvuI CGATCG 1 cut(s) 583
RsaI GTAC 2 cut(s) 305, 464
RsaNI GTAC 2 cut(s) 304, 463
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 1 cut(s) 734
SacII CCGCGG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 12, 594
SatI GCNGC 6 cut(s) 88, 299, 564, 567, 588, 846
Sau3AI GATC 4 cut(s) 7, 29, 339, 580
Sau96I GGNCC 4 cut(s) 353, 440, 441, 852
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 116, 158
ScrFI CCNGG 3 cut(s) 112, 282, 445
SduI GDGCHC 5 cut(s) 173, 444, 693, 713, 734
SfaNI GCATC 2 cut(s) 323, 601
SfcI CTRYAG 1 cut(s) 481
Sfr274I CTCGAG 1 cut(s) 721
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SinI GGWCC 2 cut(s) 353, 852
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 3 cut(s) 212, 721, 733
SmoI CTYRAG 3 cut(s) 212, 721, 733
Sse9I AATT 4 cut(s) 622, 667, 683, 791
SsiI CCGC 6 cut(s) 174, 357, 359, 395, 401, 416
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 3 cut(s) 110, 280, 443
StyI CCWWGG 2 cut(s) 675, 796
TaaI ACNGT 3 cut(s) 187, 275, 833
TaiI ACGT 5 cut(s) 54, 119, 197, 243, 703
TaqI TCGA 6 cut(s) 204, 342, 583, 722, 781, 828
TasI AATT 4 cut(s) 622, 667, 683, 791
TatI WGTACW 2 cut(s) 303, 462
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 2 cut(s) 12, 594
Tru9I TTAA 2 cut(s) 12, 594
TscAI CASTG 5 cut(s) 559, 640, 718, 759, 838
TseFI GTSAC 3 cut(s) 187, 247, 472
TseI GCWGC 6 cut(s) 87, 298, 563, 566, 587, 845
Tsp45I GTSAC 3 cut(s) 187, 247, 472
TspDTI ATGAA 2 cut(s) 668, 677
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 5 cut(s) 559, 640, 718, 759, 838
Tth111I GACNNNGTC 1 cut(s) 239
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 353, 852
XapI RAATTY 2 cut(s) 667, 683
XhoI CTCGAG 1 cut(s) 721
XspI CTAG 1 cut(s) 570
ZraI GACGTC 3 cut(s) 52, 117, 241
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.