pycom11g10230

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
8629127 .. 8632255
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10230.8

Sequence Viewer

Length: 1248 bp
ATGTTGGATCTTAATCTGAACGTCGTCGTTTCGGGGCCAAACGACGTCGAGTCGTGCGGCACTCAAATGGACGAGTCGGGGACGTCCAACTCGTCCGTTGTCAATGCCGACGCTTCCAGCACCAACGACGACTCGTGCTCCACACGCGCCGCCAGAAACGACGCCGTCACAACCTTCAACTTCGGTATTCTCAAGGTCCAGGGCGGAGACGAAGAAGAAAACGACGACGTTGTCGTGACCAAGGAGCTCTTTCCGGTCACCGGAGGCTTGAACAATTGGTCGGGGCAGGCTCACGGGCATGGGCAGTCCTCTTCATCGTCGCTTTTGGTGAGGAATAATCTGATGGAGCTTGGGTTCGATCTTGGCGGCTCCGGGGAGGTCAGGTTGGTTCAACAGAAGCAACAACAACAACCTGCTGCGCCGCCGCCGCAGCAGCAGCAGGCGAAGAAGAGCAGGAGAGGGCCGAGGTCGCGTAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGAACTGGTAGATGGGAATCGCACATTTGGGACTGTGGGAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCGGCTAGAGCCTACGACCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGATATCAATTACAACCTAAGTGATTATGAGGATGATATGAAACAGATGAAGAATTTGACCAAGGAAGAATTCGTGCACATACTACGTCGGCAGAGCACTGGCTTCTCAAGAGGCAGCTCCAGATATAGAGGGGTTACGCTGCACAAATGTGGTCGATGGGAAGCTCGAATGGGACAGTTCCTCGGAAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCGATCAAATGTAATGGAAGGGAAGCGATCACCAACTTTGAGCCAAGCACATATGAAGGGGAGATGATGTCTGAGGCTGGTAATGAGGATGGCAATCACGATCTTGATCTAAATTTGGGGATATCTCCCCCCTCATTTGGCACTGGTCAAGGGGAAGGCGAAGGGCGTCTTCAGTTCCACTCCAACCCTTTTGATGTGCACAATGGAAAAAGGATGGAGCACAATGTGAATGTAACGATGAGTGATCCACCTTTTAGAGGGCTAGTAATGACATCGATCACCCACCACCATTGTGGAACGGTGTATATCCTAGTTACTTTCCCAATCAGGAAGGAGCAACAGAGAAGAGACTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

46.1

Weight (kDa)

6.28

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AatII GACGTC 2 cut(s) 48, 86
Acc36I ACCTGC 1 cut(s) 421
AccII CGCG 2 cut(s) 147, 472
AciI CCGC 8 cut(s) 57, 150, 204, 366, 422, 425, 428, 587
AclWI GGATC 2 cut(s) 15, 1127
AcsI RAATTY 3 cut(s) 688, 704, 1000
AcuI CTGAAG 1 cut(s) 1043
AcyI GRCGYC 4 cut(s) 45, 83, 162, 1054
AdeI CACNNNGTG 1 cut(s) 1114
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 3 cut(s) 260, 1025, 1145
AgsI TTSAA 3 cut(s) 178, 271, 392
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AleI CACNNNNGTG 2 cut(s) 783, 1179
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 7 cut(s) 247, 349, 477, 608, 753, 800, 866
AluI AGCT 7 cut(s) 247, 349, 477, 608, 753, 800, 866
Alw21I GWGCWC 6 cut(s) 140, 249, 714, 734, 1089, 1110
Alw26I GTCTC 2 cut(s) 201, 1230
Alw44I GTGCAC 2 cut(s) 710, 1085
AlwI GGATC 2 cut(s) 15, 1127
AoxI GGCC 2 cut(s) 35, 461
ApaLI GTGCAC 2 cut(s) 710, 1085
ApoI RAATTY 3 cut(s) 688, 704, 1000
AspLEI GCGC 2 cut(s) 149, 421
AspS9I GGNCC 3 cut(s) 35, 196, 461
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 5 cut(s) 250, 340, 487, 910, 1159
AvaII GGWCC 1 cut(s) 196
BaeGI GKGCMC 2 cut(s) 714, 1089
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 6 cut(s) 140, 249, 714, 734, 1089, 1110
BccI CCATC 5 cut(s) 337, 513, 786, 971, 1096
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 201, 1230
BfaI CTAG 3 cut(s) 591, 1151, 1199
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 200, 373
Bme18I GGWCC 1 cut(s) 196
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 35, 196, 461
BmiI GGNNCC 2 cut(s) 36, 370
BmrFI CCNGG 2 cut(s) 200, 373
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 739
BpuEI CTTGAG 2 cut(s) 176, 727
BpuMI CCSGG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 1163
BsaBI GATNNNNATC 4 cut(s) 12, 523, 981, 993
BsaHI GRCGYC 4 cut(s) 45, 83, 162, 1054
BsaJI CCNNGG 6 cut(s) 199, 240, 372, 464, 696, 817
BsaWI WCCGGW 2 cut(s) 253, 260
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 338, 368, 368, 398, 941, 971
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 1025, 1145
Bse1I ACTGG 3 cut(s) 517, 739, 1036
Bse8I GATNNNNATC 4 cut(s) 12, 523, 981, 993
BseBI CCWGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 1163
BseDI CCNNGG 6 cut(s) 199, 240, 372, 464, 696, 817
BseGI GGATG 3 cut(s) 673, 982, 1107
BseJI GATNNNNATC 4 cut(s) 12, 523, 981, 993
BseLI CCNNNNNNNGG 3 cut(s) 260, 1025, 1145
BseMII CTCAG 2 cut(s) 494, 951
BseNI ACTGG 3 cut(s) 517, 739, 1036
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 2 cut(s) 714, 1089
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 2 cut(s) 147, 472
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 2 cut(s) 37, 463
BshVI ATCGAT 1 cut(s) 1163
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 6 cut(s) 140, 249, 714, 734, 1089, 1110
BsiSI CCGG 3 cut(s) 254, 261, 372
BslFI GGGAC 3 cut(s) 94, 551, 822
BslI CCNNNNNNNGG 3 cut(s) 260, 1025, 1145
BsmAI GTCTC 2 cut(s) 201, 1230
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 3 cut(s) 94, 551, 822
BsnI GGCC 2 cut(s) 37, 463
Bsp1286I GDGCHC 6 cut(s) 140, 249, 714, 734, 1089, 1110
Bsp143I GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
BspACI CCGC 8 cut(s) 57, 150, 204, 366, 422, 425, 428, 587
BspANI GGCC 2 cut(s) 37, 463
BspCNI CTCAG 2 cut(s) 493, 952
BspDI ATCGAT 1 cut(s) 1163
BspFNI CGCG 2 cut(s) 147, 472
BspLI GGNNCC 2 cut(s) 36, 370
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 2 cut(s) 15, 1127
BspQI GCTCTTC 1 cut(s) 443
BsrI ACTGG 3 cut(s) 517, 739, 1036
BssECI CCNNGG 6 cut(s) 199, 240, 372, 464, 696, 817
BssMI GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
BssNI GRCGYC 4 cut(s) 45, 83, 162, 1054
BssSI CACGAG 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 240, 696
Bst2BI CACGAG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 4 cut(s) 542, 813, 854, 1189
Bst6I CTCTTC 3 cut(s) 316, 443, 1228
BstACI GRCGYC 4 cut(s) 45, 83, 162, 1054
BstC8I GCNNGC 2 cut(s) 288, 441
BstDEI CTNAG 3 cut(s) 480, 653, 960
BstEII GGTNACC 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 1143
BstF5I GGATG 3 cut(s) 673, 982, 1107
BstFNI CGCG 2 cut(s) 147, 472
BstHHI GCGC 2 cut(s) 149, 421
BstKTI GATC 8 cut(s) 10, 361, 894, 918, 991, 997, 1135, 1167
BstMAI GTCTC 2 cut(s) 201, 1230
BstMBI GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 9 cut(s) 144, 427, 430, 433, 436, 469, 584, 593, 872
BstNI CCWGG 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 198, 371
BstSFI CTRYAG 1 cut(s) 502
BstSLI GKGCMC 2 cut(s) 714, 1089
BstUI CGCG 2 cut(s) 147, 472
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 1163
BsuRI GGCC 2 cut(s) 37, 463
BsuTUI ATCGAT 1 cut(s) 1163
BtsCI GGATG 3 cut(s) 673, 982, 1107
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 4 cut(s) 573, 732, 859, 1029
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 288, 441
CfoI GCGC 2 cut(s) 149, 421
Cfr13I GGNCC 3 cut(s) 35, 196, 461
ClaI ATCGAT 1 cut(s) 1163
CseI GACGC 3 cut(s) 119, 170, 1043
Csp6I GTAC 1 cut(s) 484
CspCI CAANNNNNGTGG 2 cut(s) 1160, 1195
CviAII CATG 2 cut(s) 299, 581
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 3 cut(s) 480, 653, 960
DpnI GATC 8 cut(s) 9, 360, 893, 917, 990, 996, 1134, 1166
DpnII GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
DraIII CACNNNGTG 1 cut(s) 1114
DrdI GACNNNNNNGTC 1 cut(s) 230
DriI GACNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 3 cut(s) 316, 443, 1228
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 3 cut(s) 316, 443, 1228
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 240, 696
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 2 cut(s) 640, 1011
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 1043
Eco91I GGTNACC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 1143
EcoO65I GGTNACC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 2 cut(s) 640, 1011
EcoT14I CCWWGG 2 cut(s) 240, 696
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 240, 696
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 2 cut(s) 302, 584
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 1041, 1073
FaqI GGGAC 3 cut(s) 94, 551, 822
FatI CATG 2 cut(s) 298, 580
FauNDI CATATG 1 cut(s) 940
FokI GGATG 3 cut(s) 680, 989, 1114
FriOI GRGCYC 1 cut(s) 249
FspBI CTAG 3 cut(s) 591, 1151, 1199
GlaI GCGC 2 cut(s) 148, 420
GsuI CTGGAG 1 cut(s) 739
HaeIII GGCC 2 cut(s) 37, 463
HapII CCGG 3 cut(s) 254, 261, 372
HgaI GACGC 3 cut(s) 119, 170, 1043
HhaI GCGC 2 cut(s) 149, 421
Hin1I GRCGYC 4 cut(s) 45, 83, 162, 1054
Hin1II CATG 2 cut(s) 302, 584
Hin6I GCGC 2 cut(s) 147, 419
HinP1I GCGC 2 cut(s) 147, 419
HinfI GANTC 5 cut(s) 50, 74, 131, 492, 524
HpaII CCGG 3 cut(s) 254, 261, 372
HphI GGTGA 5 cut(s) 250, 340, 487, 910, 1159
Hpy166II GTNNAC 2 cut(s) 712, 1087
Hpy188I TCNGA 4 cut(s) 18, 342, 821, 961
Hpy188III TCNNGA 6 cut(s) 235, 744, 756, 986, 992, 1216
Hpy8I GTNNAC 2 cut(s) 712, 1087
HpyAV CCTTC 7 cut(s) 184, 508, 900, 938, 1037, 1043, 1213
HpyCH4III ACNGT 4 cut(s) 542, 813, 854, 1189
HpyCH4IV ACGT 5 cut(s) 21, 45, 83, 228, 721
HpyCH4V TGCA 5 cut(s) 712, 778, 869, 1087, 1243
HpyF10VI GCNNNNNNNGC 9 cut(s) 144, 427, 430, 433, 436, 469, 584, 593, 872
HpyF3I CTNAG 3 cut(s) 480, 653, 960
HpySE526I ACGT 5 cut(s) 21, 45, 83, 228, 721
Hsp92I GRCGYC 4 cut(s) 45, 83, 162, 1054
Hsp92II CATG 2 cut(s) 302, 584
HspAI GCGC 2 cut(s) 147, 419
Kzo9I GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 7 cut(s) 143, 244, 346, 374, 758, 1105, 1222
LweI GCATC 1 cut(s) 622
MaeI CTAG 3 cut(s) 591, 1151, 1199
MaeII ACGT 5 cut(s) 21, 45, 83, 228, 721
MaeIII GTNAC 7 cut(s) 166, 235, 256, 493, 769, 1120, 1201
MalI GATC 8 cut(s) 9, 360, 893, 917, 990, 996, 1134, 1166
MboI GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 6 cut(s) 140, 249, 714, 734, 1089, 1110
MluCI AATT 5 cut(s) 274, 643, 688, 704, 1000
MlyI GAGTC 4 cut(s) 59, 83, 125, 501
MmeI TCCRAC 2 cut(s) 111, 1095
MseI TTAA 2 cut(s) 12, 615
MslI CAYNNNNRTG 4 cut(s) 65, 297, 783, 1179
MspI CCGG 3 cut(s) 254, 261, 372
MspR9I CCNGG 2 cut(s) 200, 373
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 2 cut(s) 147, 472
MwoI GCNNNNNNNGC 9 cut(s) 144, 427, 430, 433, 436, 469, 584, 593, 872
NciI CCSGG 1 cut(s) 373
NdeI CATATG 1 cut(s) 940
NdeII GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
NlaIII CATG 2 cut(s) 302, 584
NlaIV GGNNCC 2 cut(s) 36, 370
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 4 cut(s) 166, 235, 256, 493
OliI CACNNNNGTG 2 cut(s) 783, 1179
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 231
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 2 cut(s) 164, 230
PleI GAGTC 4 cut(s) 58, 82, 125, 500
PpsI GAGTC 4 cut(s) 58, 82, 125, 500
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 36, 370
PspPI GGNCC 3 cut(s) 35, 196, 461
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 2 cut(s) 164, 230
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 4 cut(s) 65, 297, 783, 1179
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 12, 615
Sau3AI GATC 8 cut(s) 7, 358, 891, 915, 988, 994, 1132, 1164
Sau96I GGNCC 3 cut(s) 35, 196, 461
SchI GAGTC 4 cut(s) 59, 83, 125, 501
ScrFI CCNGG 2 cut(s) 200, 373
SduI GDGCHC 6 cut(s) 140, 249, 714, 734, 1089, 1110
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 4 cut(s) 65, 297, 783, 1179
SmlI CTYRAG 2 cut(s) 191, 742
SmoI CTYRAG 2 cut(s) 191, 742
Sse9I AATT 5 cut(s) 274, 643, 688, 704, 1000
SsiI CCGC 8 cut(s) 57, 150, 204, 366, 422, 425, 428, 587
SspMI CTAG 3 cut(s) 591, 1151, 1199
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 198, 371
StyI CCWWGG 2 cut(s) 240, 696
TaaI ACNGT 4 cut(s) 542, 813, 854, 1189
TaiI ACGT 5 cut(s) 24, 48, 86, 231, 724
TaqI TCGA 6 cut(s) 48, 357, 790, 802, 849, 1163
TaqII GACCGA 1 cut(s) 618
TasI AATT 5 cut(s) 274, 643, 688, 704, 1000
TatI WGTACW 1 cut(s) 483
TauI GCSGC 7 cut(s) 60, 152, 369, 424, 427, 430, 590
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 2 cut(s) 12, 615
Tru9I TTAA 2 cut(s) 12, 615
TscAI CASTG 4 cut(s) 580, 739, 859, 1036
TseFI GTSAC 4 cut(s) 166, 235, 256, 493
Tsp45I GTSAC 4 cut(s) 166, 235, 256, 493
TspDTI ATGAA 4 cut(s) 303, 689, 698, 957
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 4 cut(s) 580, 739, 859, 1036
Tth111I GACNNNGTC 2 cut(s) 164, 230
VneI GTGCAC 2 cut(s) 710, 1085
VpaK11BI GGWCC 1 cut(s) 196
XagI CCTNNNNNAGG 1 cut(s) 1143
XapI RAATTY 3 cut(s) 688, 704, 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 1178
XspI CTAG 3 cut(s) 591, 1151, 1199
ZraI GACGTC 2 cut(s) 46, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.