Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003382

Physical Location & Seq

Genomic Coordinates Reverse (-)

41618688 .. 41619224

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0341000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCGGTGAGCTTGGCGTTGGAGGCCTTGAATTGCTTGAAGATTTAGGAGGCGGTGTAGAAGGGGTTAGTGGTAGTTGTGACGACGCCGATCATGGAAGCTCCCATGAATGCGAAAGTGAACTCGGCGCAATTTGGGAGGAGGATCATGATCACATCGCCTTTCGTGATGCCAAGCTTGGAGAGGCCGGCTTTGGTCTTTTGGGAAATGAGGTGGGTTTCAGAAAAGGTATAGGTTTTTCCAGTGGAGTTGACAATGAGACAGGGTCGTTTGGAGAAGTCGGAGATGTTTTCAAAGCAGTAGGTGTGGAGAGGAAGGTGGTTGGAGATGTTGGGAAGGTCCGGAAGCTTAGATTTGAAGACATGATCATGATGAGTGGTGGTTGGCTGCTGCTTCTCCGGTTGGGTCTGAGAGGCGAAAACGATGTCGGAGATGAGAGTGGGAGAGATTTTCGGCGTCTCTACAACAACCGAGTTGTTGTTGTTAGAGGCAATGGATATTATGGTGTGTTGTCAATTGAAGCTGTTATCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

178

Amino Acids

19.0

Weight (kDa)

4.69

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT2G28550 AT5G67180 AT5G67180 AT5G67180
fragaria_vesca	FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940 FvH4_3g33940
malus_domestica	MD03G1107900.v1.1 MD11G1121200.v1.1
prunus_persica	Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1 Prupe.6G091100_v2.0.a1
pyrus_communis	pycom03g08790 pycom11g10230
rosa_chinensis	RchiOBHm_Chr5g0061491 RchiOBHm_Chr5g0061501
rosa_laevigata	RLG00000035482
rosa_multiflora	Rmu_sc0006126.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019170
rosa_rugosa	Rorug05G0341000 Rorug05G0341100 Rorug05G0341200
rosa_samantha	Rh5AG403200 Rh5BG415600 Rh5CG440300 Rh5DG430100
rosa_wichuraiana	Rw5G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	87, 457
AgsI	TTSAA	5 cut(s)	32, 41, 295, 359, 521
AluBI	AGCT	5 cut(s)	13, 102, 178, 349, 524
AluI	AGCT	5 cut(s)	13, 102, 178, 349, 524
Alw26I	GTCTC	2 cut(s)	254, 464
AlwI	GGATC	1 cut(s)	153
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	3 cut(s)	3, 25, 186
ApeKI	GCWGC	2 cut(s)	388, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	375, 378
BclI	TGATCA	2 cut(s)	151, 366
BcoDI	GTCTC	2 cut(s)	254, 464
BisI	GCNGC	2 cut(s)	389, 392
BlsI	GCNGC	2 cut(s)	390, 393
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	87, 457
BsaWI	WCCGGW	2 cut(s)	342, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse118I	RCCGGY	2 cut(s)	5, 188
Bse1I	ACTGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	375, 378
BshFI	GGCC	3 cut(s)	5, 27, 188
BsiSI	CCGG	4 cut(s)	6, 189, 343, 400
BsmAI	GTCTC	2 cut(s)	254, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	5, 27, 188
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	91, 145, 151, 366
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	3 cut(s)	5, 27, 188
BspCNI	CTCAG	1 cut(s)	402
BspEI	TCCGGA	1 cut(s)	342
BspHI	TCATGA	2 cut(s)	148, 369
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	2 cut(s)	5, 188
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	2 cut(s)	5, 188
BssMI	GATC	4 cut(s)	91, 145, 151, 366
BssNI	GRCGYC	2 cut(s)	87, 457
BstACI	GRCGYC	2 cut(s)	87, 457
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	350, 410
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	94, 148, 154, 369
BstMAI	GTCTC	2 cut(s)	254, 464
BstMBI	GATC	4 cut(s)	91, 145, 151, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	375, 378
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	5, 27, 188
BtgZI	GCGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	2 cut(s)	148, 369
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	5, 188
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	2 cut(s)	95, 446
CviAII	CATG	5 cut(s)	95, 107, 149, 364, 370
DdeI	CTNAG	2 cut(s)	350, 410
DpnI	GATC	4 cut(s)	93, 147, 153, 368
DpnII	GATC	4 cut(s)	91, 145, 151, 366
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	5 cut(s)	98, 110, 152, 367, 373
FaiI	YATR	7 cut(s)	96, 108, 150, 233, 365, 371, 504
FatI	CATG	5 cut(s)	94, 106, 148, 363, 369
FbaI	TGATCA	2 cut(s)	151, 366
Fnu4HI	GCNGC	2 cut(s)	389, 392
Fsp4HI	GCNGC	2 cut(s)	389, 392
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	389, 392
HaeIII	GGCC	3 cut(s)	5, 27, 188
HapII	CCGG	4 cut(s)	6, 189, 343, 400
HgaI	GACGC	2 cut(s)	95, 446
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	87, 457
Hin1II	CATG	5 cut(s)	98, 110, 152, 367, 373
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	176, 347
HpaII	CCGG	4 cut(s)	6, 189, 343, 400
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	122, 253
Hpy188I	TCNGA	4 cut(s)	224, 284, 411, 431
Hpy188III	TCNNGA	4 cut(s)	149, 167, 343, 370
Hpy8I	GTNNAC	2 cut(s)	122, 253
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	56, 310, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	2 cut(s)	350, 410
Hsp92I	GRCGYC	2 cut(s)	87, 457
Hsp92II	CATG	5 cut(s)	98, 110, 152, 367, 373
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	342
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	2 cut(s)	151, 366
Kzo9I	GATC	4 cut(s)	91, 145, 151, 366
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	19, 202, 249, 256, 356, 413
Lsp1109I	GCAGC	2 cut(s)	375, 378
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	93, 147, 153, 368
MboI	GATC	4 cut(s)	91, 145, 151, 366
MboII	GAAGA	2 cut(s)	53, 371
MfeI	CAATTG	1 cut(s)	516
MluCI	AATT	3 cut(s)	32, 132, 516
MmeI	TCCRAC	3 cut(s)	262, 304, 409
MnlI	CCTC	9 cut(s)	17, 44, 133, 136, 178, 205, 306, 407, 482
MroI	TCCGGA	1 cut(s)	342
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	1 cut(s)	535
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	4 cut(s)	6, 189, 343, 400
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	24
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	4 cut(s)	91, 145, 151, 366
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	5 cut(s)	98, 110, 152, 367, 373
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	80
PagI	TCATGA	2 cut(s)	148, 369
PceI	AGGCCT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	190
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	390, 393
PspPI	GGNCC	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	535
SatI	GCNGC	2 cut(s)	389, 392
Sau3AI	GATC	4 cut(s)	91, 145, 151, 366
Sau96I	GGNCC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	32, 132, 516
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	27
TasI	AATT	3 cut(s)	32, 132, 516
Tru1I	TTAA	1 cut(s)	535
Tru9I	TTAA	1 cut(s)	535
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	388, 391
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.