Rroxscaffold_1G00019170

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003382
Physical Location & Seq
Forward (+)
23394525 .. 23398771
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019170.1

Sequence Viewer

Length: 1443 bp
ATGTTGGATCTTAATCTCAACGTGGTGGGATCGTCGTCGGAACAAAACGACGTCTTCGTCGTTGGTTCGGTTCACGGTATGTTTCCGGAAGGCTCTGGCAGCGCGACGCAAATGGACGAGTCCGGGACGTCGAATTCATCCGTCGTCAATGCCGACGCCTCCAGCACCAACGACGACTCGTGCTCCGCACGCGCCGCCGTGACGACGTTCAACTTCGATATTCTCAAGGTCGGTGGAGGAGAAGGAGACGACGTCGTTGTGACGAAGGAGCTGTTTCCGGTGAACAGTTGGCCGGGGAAGGGGCAGCAGTACTCGCCGGCATCATCGTCGGCGAGGCACAACTTGATCGAGCTTGGCGGGCCCGCGGAGGTGAGGTTGGTTCAGCAGAAACAGCAACAACCGCCGCCACCGCCACCACAACAACCGCAGGTGAAGAAGAGCAGGAGAGGGCCCAGGTCTCGGAGTTCTCAGTACAGAGGGGTCACTTTCTATAGAAGAACTGGTAGATGGGAATCGCATATTTGTTTTGATGAAAAATATGGATTAATTGATGTAGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGATATCAATTACAATCTCAGTGATTATGAGGAGGATATGAAACAGATGAAGAATTTGACCAAGGAAGAATTCGTGCACATACTACGTCGGCAGAGCACTGGTTTCTCGAGGGGGAGCTCAAGATATAGAGGGGGGTTACATTGCACAAATGTGGTCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAACTATCAAATGTAATGGAAGGGAAGCTGTCACCAACTTTGAGGCAAGTACTTACGAAGGGGAGATGATATCTGATGCTGTTAATGAAGATGGCAATCACAATCTTGATCTGAATTTGGGAATATCTCCTCCTTCATTTGGTAATGGTCAGAAGCAAGACGAGGGGCATCTTCAGTTCCATTCTGGGCAAAATGGAAAGAATATGATGATGGTGCCCAATGCAAATGCAACAATGACTGCTCCACCTTTCAGAGGCGTAATAATGACATCAGAGCACCCTCCTTTATGGAATGGTGTATATCCTAGTTTCCTTCCGAATCAGGAAAGAGCAATAGAGAAGAGAATTGCATTAGGATCTCAAGGACCTCCCAATTGGGCTTGGCAAATGCATGGCCAGGTCAGTGCCCCAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTACAGCTACCACTCCATCCGCTGCTGTCCTCCCTGTAATCCCCTCGAACCCAACCGCCCTCAATCTCTGTTTTACATCTTCAGCCACGGCCACCCACCATATTGCTGCTTTACTAGTGGAAGAAGAACAAAGCTTGGAAAAAGGAGGTCGTTTCCCAGTTGCTTTACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

480

Amino Acids

52.04

Weight (kDa)

6.24

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 157 - 207 1.3e-07 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 418
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 3 cut(s) 54, 131, 255
Acc36I ACCTGC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 1033
AccII CGCG 3 cut(s) 104, 192, 365
AccIII TCCGGA 1 cut(s) 85
AclWI GGATC 3 cut(s) 15, 37, 1183
AcoI YGGCCR 3 cut(s) 290, 1213, 1359
AcsI RAATTY 4 cut(s) 133, 682, 698, 934
AcuI CTGAAG 2 cut(s) 977, 1335
AcyI GRCGYC 4 cut(s) 51, 128, 156, 252
AfaI GTAC 3 cut(s) 311, 473, 871
AfiI CCNNNNNNNGG 4 cut(s) 299, 459, 959, 1073
AgsI TTSAA 1 cut(s) 211
AhlI ACTAGT 1 cut(s) 1384
AjnI CCWGG 2 cut(s) 452, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 8 cut(s) 271, 352, 602, 747, 796, 848, 1277, 1404
AluI AGCT 8 cut(s) 271, 352, 602, 747, 796, 848, 1277, 1404
Alw21I GWGCWC 5 cut(s) 185, 708, 728, 749, 1098
Alw26I GTCTC 2 cut(s) 240, 462
Alw44I GTGCAC 1 cut(s) 704
AlwI GGATC 3 cut(s) 15, 37, 1183
Ama87I CYCGRG 1 cut(s) 736
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 5 cut(s) 290, 359, 449, 1213, 1359
ApaI GGGCCC 2 cut(s) 363, 453
ApaLI GTGCAC 1 cut(s) 704
ApeKI GCWGC 8 cut(s) 99, 304, 578, 581, 602, 1250, 1292, 1376
ApoI RAATTY 4 cut(s) 133, 682, 698, 934
AseI ATTAAT 1 cut(s) 545
AspLEI GCGC 2 cut(s) 104, 194
AspS9I GGNCC 5 cut(s) 359, 360, 449, 450, 1184
AsuC2I CCSGG 2 cut(s) 124, 294
AsuHPI GGTGA 4 cut(s) 292, 382, 442, 844
AvaI CYCGRG 1 cut(s) 736
AvaII GGWCC 1 cut(s) 1184
BaeGI GKGCMC 5 cut(s) 363, 453, 708, 1038, 1228
BalI TGGCCA 1 cut(s) 1215
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 3 cut(s) 363, 453, 749
BauI CACGAG 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 5 cut(s) 185, 708, 728, 749, 1098
BbvI GCAGC 8 cut(s) 111, 316, 565, 568, 589, 1262, 1279, 1363
BccI CCATC 4 cut(s) 501, 905, 1024, 1294
BceAI ACGGC 2 cut(s) 182, 1374
BcgI CGANNNNNNTGC 4 cut(s) 309, 343, 584, 618
BciT130I CCWGG 2 cut(s) 454, 1217
BcnI CCSGG 2 cut(s) 124, 294
BcoDI GTCTC 2 cut(s) 240, 462
BcuI ACTAGT 1 cut(s) 1384
BfaI CTAG 3 cut(s) 585, 1125, 1385
BfmI CTRYAG 2 cut(s) 490, 1248
BfuAI ACCTGC 1 cut(s) 418
BmcAI AGTACT 2 cut(s) 311, 871
Bme1390I CCNGG 4 cut(s) 124, 294, 454, 1217
Bme18I GGWCC 1 cut(s) 1184
BmeT110I CYCGRG 1 cut(s) 736
BmgT120I GGNCC 5 cut(s) 359, 360, 449, 450, 1184
BmiI GGNNCC 3 cut(s) 361, 451, 1035
BmrFI CCNGG 4 cut(s) 124, 294, 454, 1217
BmrI ACTGGG 1 cut(s) 1421
BmsI GCATC 5 cut(s) 329, 616, 886, 997, 1262
BmuI ACTGGG 1 cut(s) 1421
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 3 cut(s) 209, 733, 1164
BpuMI CCSGG 2 cut(s) 124, 294
BsaBI GATNNNNATC 3 cut(s) 12, 511, 915
BsaHI GRCGYC 4 cut(s) 51, 128, 156, 252
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 6 cut(s) 293, 363, 452, 690, 813, 1356
BsaWI WCCGGW 2 cut(s) 85, 277
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 237, 267, 359, 389
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 459, 959, 1073
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 505, 733, 1427
Bse3DI GCAATG 1 cut(s) 769
Bse8I GATNNNNATC 3 cut(s) 12, 511, 915
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 2 cut(s) 454, 1217
BseDI CCNNGG 6 cut(s) 293, 363, 452, 690, 813, 1356
BseGI GGATG 2 cut(s) 137, 1286
BseJI GATNNNNATC 3 cut(s) 12, 511, 915
BseLI CCNNNNNNNGG 4 cut(s) 299, 459, 959, 1073
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 2 cut(s) 482, 661
BseNI ACTGG 3 cut(s) 505, 733, 1427
BseRI GAGGAG 3 cut(s) 252, 674, 939
BseSI GKGCMC 5 cut(s) 363, 453, 708, 1038, 1228
BseXI GCAGC 8 cut(s) 111, 316, 565, 568, 589, 1262, 1279, 1363
Bsh1236I CGCG 3 cut(s) 104, 192, 365
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 5 cut(s) 292, 361, 451, 1215, 1361
BshNI GGYRCC 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 5 cut(s) 185, 708, 728, 749, 1098
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 5 cut(s) 86, 123, 278, 293, 317
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 4 cut(s) 299, 459, 959, 1073
BsmAI GTCTC 2 cut(s) 240, 462
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 5 cut(s) 292, 361, 451, 1215, 1361
Bso31I GGTCTC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 736
Bsp120I GGGCCC 2 cut(s) 359, 449
Bsp1286I GDGCHC 9 cut(s) 185, 363, 453, 708, 728, 749, 1038, 1098, 1228
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
BspANI GGCC 5 cut(s) 292, 361, 451, 1215, 1361
BspCNI CTCAG 2 cut(s) 481, 660
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 3 cut(s) 104, 192, 365
BspLI GGNNCC 3 cut(s) 361, 451, 1035
BspMAI CTGCAG 1 cut(s) 1252
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 3 cut(s) 15, 37, 1183
BspQI GCTCTTC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 769
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 3 cut(s) 505, 733, 1427
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 6 cut(s) 293, 363, 452, 690, 813, 1356
BssMI GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
BssNI GRCGYC 4 cut(s) 51, 128, 156, 252
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 690, 813
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 454, 1217
Bst4CI ACNGT 3 cut(s) 77, 287, 1239
Bst6I CTCTTC 2 cut(s) 431, 1154
BstACI GRCGYC 4 cut(s) 51, 128, 156, 252
BstC8I GCNNGC 4 cut(s) 190, 318, 359, 363
BstDEI CTNAG 2 cut(s) 468, 647
BstDSI CCRYGG 2 cut(s) 363, 1356
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 2 cut(s) 137, 1286
BstFNI CGCG 3 cut(s) 104, 192, 365
BstHHI GCGC 2 cut(s) 104, 194
BstKTI GATC 6 cut(s) 10, 32, 348, 598, 931, 1178
BstMAI GTCTC 2 cut(s) 240, 462
BstMBI GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
BstMCI CGRYCG 1 cut(s) 598
BstNI CCWGG 2 cut(s) 454, 1217
BstSCI CCNGG 4 cut(s) 122, 292, 452, 1215
BstSFI CTRYAG 2 cut(s) 490, 1248
BstSLI GKGCMC 5 cut(s) 363, 453, 708, 1038, 1228
BstUI CGCG 3 cut(s) 104, 192, 365
BstV1I GCAGC 8 cut(s) 111, 316, 565, 568, 589, 1262, 1279, 1363
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 7, 1175
BstYI RGATCY 2 cut(s) 7, 1175
BsuRI GGCC 5 cut(s) 292, 361, 451, 1215, 1361
BtgI CCRYGG 2 cut(s) 363, 1356
BtsCI GGATG 2 cut(s) 137, 1286
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 5 cut(s) 567, 655, 726, 1228, 1235
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 4 cut(s) 190, 318, 359, 363
CfoI GCGC 2 cut(s) 104, 194
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 5 cut(s) 359, 360, 449, 450, 1184
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 2 cut(s) 115, 164
Csp6I GTAC 3 cut(s) 310, 472, 870
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 2 cut(s) 575, 1211
CviQI GTAC 3 cut(s) 310, 472, 870
DdeI CTNAG 2 cut(s) 468, 647
DpnI GATC 6 cut(s) 9, 31, 347, 597, 930, 1177
DpnII GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 3 cut(s) 290, 1213, 1359
Eam1104I CTCTTC 2 cut(s) 431, 1154
EarI CTCTTC 2 cut(s) 431, 1154
Ecl136II GAGCTC 1 cut(s) 747
Eco130I CCWWGG 2 cut(s) 690, 813
Eco24I GRGCYC 3 cut(s) 363, 453, 749
Eco31I GGTCTC 1 cut(s) 462
Eco32I GATATC 2 cut(s) 634, 891
Eco47I GGWCC 1 cut(s) 1184
Eco53kI GAGCTC 1 cut(s) 747
Eco57I CTGAAG 2 cut(s) 977, 1335
Eco88I CYCGRG 1 cut(s) 736
EcoICRI GAGCTC 1 cut(s) 747
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoO109I RGGNCCY 2 cut(s) 449, 1184
EcoRI GAATTC 2 cut(s) 133, 698
EcoRII CCWGG 2 cut(s) 452, 1215
EcoRV GATATC 2 cut(s) 634, 891
EcoT14I CCWWGG 2 cut(s) 690, 813
EcoT22I ATGCAT 1 cut(s) 1212
EcoT38I GRGCYC 3 cut(s) 363, 453, 749
ErhI CCWWGG 2 cut(s) 690, 813
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 2 cut(s) 578, 1214
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 574, 1210
FauI CCCGC 2 cut(s) 350, 370
FokI GGATG 2 cut(s) 124, 1273
FriOI GRGCYC 3 cut(s) 363, 453, 749
FspBI CTAG 3 cut(s) 585, 1125, 1385
GlaI GCGC 2 cut(s) 103, 193
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 5 cut(s) 292, 361, 451, 1215, 1361
HapII CCGG 5 cut(s) 86, 123, 278, 293, 317
HgaI GACGC 2 cut(s) 115, 164
HhaI GCGC 2 cut(s) 104, 194
Hin1I GRCGYC 4 cut(s) 51, 128, 156, 252
Hin1II CATG 2 cut(s) 578, 1214
Hin6I GCGC 2 cut(s) 102, 192
HinP1I GCGC 2 cut(s) 102, 192
HindIII AAGCTT 1 cut(s) 1402
HinfI GANTC 5 cut(s) 119, 176, 512, 1138, 1263
HpaII CCGG 5 cut(s) 86, 123, 278, 293, 317
HphI GGTGA 4 cut(s) 292, 382, 442, 844
Hpy166II GTNNAC 3 cut(s) 73, 283, 706
Hpy188I TCNGA 8 cut(s) 40, 462, 895, 933, 972, 1073, 1093, 1137
Hpy188III TCNNGA 6 cut(s) 86, 736, 750, 926, 1142, 1260
Hpy8I GTNNAC 3 cut(s) 73, 283, 706
HpyAV CCTTC 8 cut(s) 83, 236, 259, 292, 834, 872, 963, 1142
HpyCH4III ACNGT 3 cut(s) 77, 287, 1239
HpyCH4IV ACGT 6 cut(s) 21, 51, 128, 206, 252, 715
HpyCH4V TGCA 7 cut(s) 706, 774, 1043, 1049, 1169, 1210, 1250
HpyF3I CTNAG 2 cut(s) 468, 647
HpySE526I ACGT 6 cut(s) 21, 51, 128, 206, 252, 715
Hsp92I GRCGYC 4 cut(s) 51, 128, 156, 252
Hsp92II CATG 2 cut(s) 578, 1214
HspAI GCGC 2 cut(s) 102, 192
Kpn2I TCCGGA 1 cut(s) 85
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 4 cut(s) 188, 268, 744, 1066
Lsp1109I GCAGC 8 cut(s) 111, 316, 565, 568, 589, 1262, 1279, 1363
LweI GCATC 5 cut(s) 329, 616, 886, 997, 1262
MaeI CTAG 3 cut(s) 585, 1125, 1385
MaeII ACGT 6 cut(s) 21, 51, 128, 206, 252, 715
MaeIII GTNAC 5 cut(s) 199, 259, 481, 765, 850
MalI GATC 6 cut(s) 9, 31, 347, 597, 930, 1177
MboI GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
MfeI CAATTG 1 cut(s) 1192
MflI RGATCY 2 cut(s) 7, 1175
MhlI GDGCHC 9 cut(s) 185, 363, 453, 708, 728, 749, 1038, 1098, 1228
MlsI TGGCCA 1 cut(s) 1215
MluCI AATT 9 cut(s) 133, 546, 637, 682, 698, 808, 934, 1164, 1192
MluNI TGGCCA 1 cut(s) 1215
MlyI GAGTC 2 cut(s) 128, 170
MmeI TCCRAC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 1215
Mph1103I ATGCAT 1 cut(s) 1212
MroI TCCGGA 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 316
MscI TGGCCA 1 cut(s) 1215
MseI TTAA 4 cut(s) 12, 545, 609, 903
MslI CAYNNNNRTG 1 cut(s) 779
Msp20I TGGCCA 1 cut(s) 1215
MspA1I CMGCKG 2 cut(s) 365, 1292
MspI CCGG 5 cut(s) 86, 123, 278, 293, 317
MspR9I CCNGG 4 cut(s) 124, 294, 454, 1217
MunI CAATTG 1 cut(s) 1192
MvaI CCWGG 2 cut(s) 454, 1217
MvnI CGCG 3 cut(s) 104, 192, 365
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 2 cut(s) 124, 294
NdeII GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 2 cut(s) 578, 1214
NlaIV GGNNCC 3 cut(s) 361, 451, 1035
NmuCI GTSAC 4 cut(s) 199, 259, 481, 850
NsiI ATGCAT 1 cut(s) 1212
OliI CACNNNNGTG 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 57, 150
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 512, 1138, 1263
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 122
Ple19I CGATCG 1 cut(s) 598
PleI GAGTC 2 cut(s) 127, 170
PpsI GAGTC 2 cut(s) 127, 170
PpuMI RGGWCCY 1 cut(s) 1184
PshBI ATTAAT 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 1184
Psp6I CCWGG 2 cut(s) 452, 1215
PspGI CCWGG 2 cut(s) 452, 1215
PspN4I GGNNCC 3 cut(s) 361, 451, 1035
PspOMI GGGCCC 2 cut(s) 359, 449
PspPI GGNCC 5 cut(s) 359, 360, 449, 450, 1184
PspPPI RGGWCCY 1 cut(s) 1184
PstI CTGCAG 1 cut(s) 1252
PsuI RGATCY 2 cut(s) 7, 1175
PsyI GACNNNGTC 1 cut(s) 251
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 3 cut(s) 311, 473, 871
RsaNI GTAC 3 cut(s) 310, 472, 870
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 749
SacII CCGCGG 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 4 cut(s) 12, 545, 609, 903
Sau3AI GATC 6 cut(s) 7, 29, 345, 595, 928, 1175
Sau96I GGNCC 5 cut(s) 359, 360, 449, 450, 1184
ScaI AGTACT 2 cut(s) 311, 871
SchI GAGTC 2 cut(s) 128, 170
ScrFI CCNGG 4 cut(s) 124, 294, 454, 1217
SduI GDGCHC 9 cut(s) 185, 363, 453, 708, 728, 749, 1038, 1098, 1228
SfaNI GCATC 5 cut(s) 329, 616, 886, 997, 1262
SfcI CTRYAG 2 cut(s) 490, 1248
Sfr274I CTCGAG 1 cut(s) 736
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 1 cut(s) 1184
SlaI CTCGAG 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 4 cut(s) 224, 736, 748, 1179
SmoI CTYRAG 4 cut(s) 224, 736, 748, 1179
SpeI ACTAGT 1 cut(s) 1384
Sse9I AATT 9 cut(s) 133, 546, 637, 682, 698, 808, 934, 1164, 1192
SspMI CTAG 3 cut(s) 585, 1125, 1385
SstI GAGCTC 1 cut(s) 749
StyD4I CCNGG 4 cut(s) 122, 292, 452, 1215
StyI CCWWGG 2 cut(s) 690, 813
TaaI ACNGT 3 cut(s) 77, 287, 1239
TaiI ACGT 6 cut(s) 24, 54, 131, 209, 255, 718
TaqI TCGA 7 cut(s) 131, 216, 348, 598, 737, 798, 1316
TasI AATT 9 cut(s) 133, 546, 637, 682, 698, 808, 934, 1164, 1192
TatI WGTACW 3 cut(s) 309, 471, 869
TauI GCSGC 2 cut(s) 197, 406
TfiI GAWTC 3 cut(s) 512, 1138, 1263
Tru1I TTAA 4 cut(s) 12, 545, 609, 903
Tru9I TTAA 4 cut(s) 12, 545, 609, 903
TscAI CASTG 5 cut(s) 574, 655, 733, 1228, 1242
TseFI GTSAC 4 cut(s) 199, 259, 481, 850
TseI GCWGC 8 cut(s) 99, 304, 578, 581, 602, 1250, 1292, 1376
Tsp45I GTSAC 4 cut(s) 199, 259, 481, 850
TspDTI ATGAA 6 cut(s) 126, 546, 683, 692, 921, 945
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 5 cut(s) 574, 655, 733, 1228, 1242
Tth111I GACNNNGTC 1 cut(s) 251
VneI GTGCAC 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 1184
VspI ATTAAT 1 cut(s) 545
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 4 cut(s) 133, 682, 698, 934
XhoI CTCGAG 1 cut(s) 736
XspI CTAG 3 cut(s) 585, 1125, 1385
ZraI GACGTC 3 cut(s) 52, 129, 253
ZrmI AGTACT 2 cut(s) 311, 871
Zsp2I ATGCAT 1 cut(s) 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.