FvH4_3g33940

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
29365831 .. 29369977
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33940.t4

Sequence Viewer

Length: 1143 bp
ATGCTGGATCTTAATCTCAGCGCGGTAGGGTCGTCGGAACAAGACGACGCCGTCGTCGTCGTCGGCGGCTCGTCTCACGGCATGTTCCCGGAAGGCTCCGGCAGCGCGACGCAAATGGACGAGTCCGGGACGTCGAACTCGTCCGTCGTCAATGCCGACGCCTCCAGCACCAACGACGACTCGTGCTCCGCACGCGCCGCCGTGACGACGCTCAACTTCGATATTCTCAAGGTCGGCGGAGGAGATGAAGAAGAGGAGGACGACGTCGTTGTGACCAAGGAGCTGTTTCCGGTGAACAGCTGGCCGGGGACTGGGCAGCAGTACTCGCCGGCGTCATCATCGGCGAGGCAGAGCTTGATCGAGCTTGGGTTCAATCATGGTGGGCCGCCGGCGGAGGTGAGGCTGGTTCAGCAGAAACAACCACAACCGCCGCCGCCGCCGCCGCCACCGCAGGTGAAGAAGAGCAGGAGAGGGCCCAGGTCTCGGAGTTCTCAGTATAGAGGGGTCACTTTCTATAGAAGAACTGGTAGATGGGAATCACATATTTGGGATTGTGGCAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATAGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTATAATCTCAGTGATTATGAGGAGGATATGAAACAGATGAAGAATTTGACAAAGGAAGAATTCGTGCACATACTACGTCGGCAGAGCACTGGTTTCTCGAGAGGGAGCTCAAAATATAGAGGGGTTACACTGCACAAATGTGGTCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGTAATGGAAGGGAAGCTGTCACCAACTTTGAGGCAAGTACTTATGAAGGGGAGATGATATCAGACGCTGGTAATGAAGATGGCAACCACAATCTTGATCTGAATTTGGGAATATCTCCCCCTTCATTTGGTAGTCGTCAAAAGCAAGGCGAAGGGCAGCTTCAGTTCGATTCTGGCCCTTGTGAGGGGCAAAATGGAAAGACTACGAGGAATACTGAAGGAGGGCTTGTGGTGGAGTTCAGCTATCATAATACTAGACATCATTTTTTTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

381

Amino Acids

41.51

Weight (kDa)

5.97

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 165 - 213 4.3e-10 AP2 domain
AP2 PF00847 256 - 306 4.5e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AarI CACCTGC 1 cut(s) 442
AasI GACNNNNNNGTC 2 cut(s) 50, 53
AatII GACGTC 2 cut(s) 134, 267
Acc36I ACCTGC 1 cut(s) 442
AccII CGCG 3 cut(s) 23, 107, 195
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 3 cut(s) 700, 716, 967
AcuI CTGAAG 2 cut(s) 1010, 1101
AcyI GRCGYC 5 cut(s) 48, 131, 159, 264, 332
AfaI GTAC 2 cut(s) 323, 904
AfiI CCNNNNNNNGG 5 cut(s) 311, 483, 992, 1048, 1049
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 1 cut(s) 476
AleI CACNNNNGTG 1 cut(s) 795
Alw21I GWGCWC 4 cut(s) 188, 726, 746, 767
Alw26I GTCTC 2 cut(s) 78, 486
Alw44I GTGCAC 1 cut(s) 722
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 754
AoxI GGCC 4 cut(s) 302, 383, 473, 1039
ApaI GGGCCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 722
ApeKI GCWGC 7 cut(s) 102, 316, 596, 599, 620, 854, 1021
ApoI RAATTY 3 cut(s) 700, 716, 967
AspLEI GCGC 3 cut(s) 23, 107, 197
AspS9I GGNCC 4 cut(s) 383, 473, 474, 1040
AsuC2I CCSGG 3 cut(s) 89, 127, 306
AsuHPI GGTGA 4 cut(s) 304, 409, 466, 877
AvaI CYCGRG 1 cut(s) 754
BaeGI GKGCMC 2 cut(s) 477, 726
BanII GRGCYC 2 cut(s) 477, 767
BauI CACGAG 1 cut(s) 181
Bbv12I GWGCWC 4 cut(s) 188, 726, 746, 767
BbvI GCAGC 7 cut(s) 114, 328, 583, 586, 607, 866, 1033
BccI CCATC 2 cut(s) 525, 938
BceAI ACGGC 3 cut(s) 35, 94, 185
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 1 cut(s) 478
BcnI CCSGG 3 cut(s) 89, 127, 306
BcoDI GTCTC 2 cut(s) 78, 486
BfaI CTAG 2 cut(s) 603, 1119
BfmI CTRYAG 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 442
BmcAI AGTACT 2 cut(s) 323, 904
Bme1390I CCNGG 4 cut(s) 89, 127, 306, 478
BmeT110I CYCGRG 1 cut(s) 754
BmgT120I GGNCC 4 cut(s) 383, 473, 474, 1040
BmiI GGNNCC 2 cut(s) 97, 475
BmrFI CCNGG 4 cut(s) 89, 127, 306, 478
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 3 cut(s) 89, 127, 306
BsaBI GATNNNNATC 2 cut(s) 12, 535
BsaHI GRCGYC 5 cut(s) 48, 131, 159, 264, 332
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 4 cut(s) 276, 305, 476, 829
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 1077, 1107
Bsc4I CCNNNNNNNGG 5 cut(s) 311, 483, 992, 1048, 1049
Bse118I RCCGGY 2 cut(s) 328, 388
Bse1I ACTGG 3 cut(s) 316, 529, 751
Bse8I GATNNNNATC 2 cut(s) 12, 535
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 4 cut(s) 276, 305, 476, 829
BseJI GATNNNNATC 2 cut(s) 12, 535
BseLI CCNNNNNNNGG 5 cut(s) 311, 483, 992, 1048, 1049
BseMII CTCAG 3 cut(s) 31, 506, 679
BseNI ACTGG 3 cut(s) 316, 529, 751
BseRI GAGGAG 3 cut(s) 255, 269, 692
BseSI GKGCMC 2 cut(s) 477, 726
BseXI GCAGC 7 cut(s) 114, 328, 583, 586, 607, 866, 1033
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 3 cut(s) 23, 107, 195
BshFI GGCC 4 cut(s) 304, 385, 475, 1041
BsiHKAI GWGCWC 4 cut(s) 188, 726, 746, 767
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 7 cut(s) 89, 99, 126, 290, 305, 329, 389
BslFI GGGAC 2 cut(s) 142, 322
BslI CCNNNNNNNGG 5 cut(s) 311, 483, 992, 1048, 1049
BsmAI GTCTC 2 cut(s) 78, 486
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 142, 322
BsnI GGCC 4 cut(s) 304, 385, 475, 1041
Bso31I GGTCTC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 754
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 5 cut(s) 188, 477, 726, 746, 767
Bsp143I GATC 3 cut(s) 7, 357, 961
BspANI GGCC 4 cut(s) 304, 385, 475, 1041
BspCNI CTCAG 3 cut(s) 30, 505, 678
BspFNI CGCG 3 cut(s) 23, 107, 195
BspLI GGNNCC 2 cut(s) 97, 475
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 486
BsrFI RCCGGY 2 cut(s) 328, 388
BsrI ACTGG 3 cut(s) 316, 529, 751
BssAI RCCGGY 2 cut(s) 328, 388
BssECI CCNNGG 4 cut(s) 276, 305, 476, 829
BssMI GATC 3 cut(s) 7, 357, 961
BssNI GRCGYC 5 cut(s) 48, 131, 159, 264, 332
BssSI CACGAG 1 cut(s) 181
BssT1I CCWWGG 2 cut(s) 276, 829
Bst2BI CACGAG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 246, 455
BstACI GRCGYC 5 cut(s) 48, 131, 159, 264, 332
BstC8I GCNNGC 4 cut(s) 193, 302, 330, 390
BstDEI CTNAG 3 cut(s) 17, 492, 665
BstFNI CGCG 3 cut(s) 23, 107, 195
BstHHI GCGC 3 cut(s) 23, 107, 197
BstKTI GATC 3 cut(s) 10, 360, 964
BstMAI GTCTC 2 cut(s) 78, 486
BstMBI GATC 3 cut(s) 7, 357, 961
BstNI CCWGG 1 cut(s) 478
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 4 cut(s) 87, 125, 304, 476
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 2 cut(s) 477, 726
BstUI CGCG 3 cut(s) 23, 107, 195
BstV1I GCAGC 7 cut(s) 114, 328, 583, 586, 607, 866, 1033
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 304, 385, 475, 1041
BtsI GCAGTG 2 cut(s) 585, 785
BtsIMutI CAGTG 4 cut(s) 585, 673, 744, 785
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 4 cut(s) 193, 302, 330, 390
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 3 cut(s) 23, 107, 197
Cfr10I RCCGGY 2 cut(s) 328, 388
Cfr13I GGNCC 4 cut(s) 383, 473, 474, 1040
CseI GACGC 6 cut(s) 56, 118, 167, 217, 321, 938
Csp6I GTAC 2 cut(s) 322, 903
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 3 cut(s) 82, 377, 593
CviQI GTAC 2 cut(s) 322, 903
DdeI CTNAG 3 cut(s) 17, 492, 665
DpnI GATC 3 cut(s) 9, 359, 963
DpnII GATC 3 cut(s) 7, 357, 961
DrdI GACNNNNNNGTC 2 cut(s) 50, 53
DseDI GACNNNNNNGTC 2 cut(s) 50, 53
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 246, 455
EarI CTCTTC 2 cut(s) 246, 455
EciI GGCGGA 2 cut(s) 252, 407
Ecl136II GAGCTC 1 cut(s) 765
Eco130I CCWWGG 2 cut(s) 276, 829
Eco24I GRGCYC 2 cut(s) 477, 767
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 2 cut(s) 652, 924
Eco53kI GAGCTC 1 cut(s) 765
Eco57I CTGAAG 2 cut(s) 1010, 1101
Eco88I CYCGRG 1 cut(s) 754
EcoICRI GAGCTC 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 476
EcoRV GATATC 2 cut(s) 652, 924
EcoT14I CCWWGG 2 cut(s) 276, 829
EcoT38I GRGCYC 2 cut(s) 477, 767
ErhI CCWWGG 2 cut(s) 276, 829
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 3 cut(s) 85, 380, 596
FalI AAGNNNNNCTT 4 cut(s) 1008, 1040, 1074, 1106
FaqI GGGAC 2 cut(s) 142, 322
FatI CATG 3 cut(s) 81, 376, 592
FriOI GRGCYC 2 cut(s) 477, 767
FspBI CTAG 2 cut(s) 603, 1119
GlaI GCGC 3 cut(s) 22, 106, 196
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 4 cut(s) 304, 385, 475, 1041
HapII CCGG 7 cut(s) 89, 99, 126, 290, 305, 329, 389
HgaI GACGC 6 cut(s) 56, 118, 167, 217, 321, 938
HhaI GCGC 3 cut(s) 23, 107, 197
Hin1I GRCGYC 5 cut(s) 48, 131, 159, 264, 332
Hin1II CATG 3 cut(s) 85, 380, 596
Hin6I GCGC 3 cut(s) 21, 105, 195
HinP1I GCGC 3 cut(s) 21, 105, 195
HinfI GANTC 4 cut(s) 122, 179, 536, 1034
HpaII CCGG 7 cut(s) 89, 99, 126, 290, 305, 329, 389
HphI GGTGA 4 cut(s) 304, 409, 466, 877
Hpy166II GTNNAC 2 cut(s) 295, 724
Hpy188I TCNGA 5 cut(s) 37, 486, 928, 966, 1142
Hpy188III TCNNGA 3 cut(s) 754, 756, 959
Hpy8I GTNNAC 2 cut(s) 295, 724
HpyAV CCTTC 6 cut(s) 86, 867, 905, 996, 1010, 1076
HpyCH4IV ACGT 3 cut(s) 131, 264, 733
HpyCH4V TGCA 2 cut(s) 724, 790
HpyF3I CTNAG 3 cut(s) 17, 492, 665
HpySE526I ACGT 3 cut(s) 131, 264, 733
Hsp92I GRCGYC 5 cut(s) 48, 131, 159, 264, 332
Hsp92II CATG 3 cut(s) 85, 380, 596
HspAI GCGC 3 cut(s) 21, 105, 195
KroI GCCGGC 2 cut(s) 328, 388
KroNI GCCGGC 2 cut(s) 330, 390
Kzo9I GATC 3 cut(s) 7, 357, 961
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 4 cut(s) 101, 191, 280, 762
Lsp1109I GCAGC 7 cut(s) 114, 328, 583, 586, 607, 866, 1033
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 603, 1119
MaeII ACGT 3 cut(s) 131, 264, 733
MaeIII GTNAC 5 cut(s) 202, 271, 505, 781, 883
MalI GATC 3 cut(s) 9, 359, 963
MboI GATC 3 cut(s) 7, 357, 961
MboII GAAGA 8 cut(s) 260, 263, 469, 472, 531, 709, 725, 953
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 5 cut(s) 188, 477, 726, 746, 767
MluCI AATT 5 cut(s) 655, 700, 716, 824, 967
MlyI GAGTC 2 cut(s) 131, 173
MmeI TCCRAC 1 cut(s) 15
MreI CGCCGGCG 2 cut(s) 328, 388
MroNI GCCGGC 2 cut(s) 328, 388
MseI TTAA 2 cut(s) 12, 627
MslI CAYNNNNRTG 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 7 cut(s) 89, 99, 126, 290, 305, 329, 389
MspR9I CCNGG 4 cut(s) 89, 127, 306, 478
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 3 cut(s) 23, 107, 195
NaeI GCCGGC 2 cut(s) 330, 390
NciI CCSGG 3 cut(s) 89, 127, 306
NdeII GATC 3 cut(s) 7, 357, 961
NgoMIV GCCGGC 2 cut(s) 328, 388
NlaIII CATG 3 cut(s) 85, 380, 596
NlaIV GGNNCC 2 cut(s) 97, 475
NmuCI GTSAC 4 cut(s) 202, 271, 505, 883
NspI RCATGY 1 cut(s) 85
OliI CACNNNNGTG 1 cut(s) 795
PaeR7I CTCGAG 1 cut(s) 754
PaqCI CACCTGC 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 54, 137, 153
PdiI GCCGGC 2 cut(s) 330, 390
PfeI GAWTC 2 cut(s) 536, 1034
PflFI GACNNNGTC 2 cut(s) 50, 263
PfoI TCCNGGA 2 cut(s) 87, 125
PleI GAGTC 2 cut(s) 130, 173
PpsI GAGTC 2 cut(s) 130, 173
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 2 cut(s) 97, 475
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 4 cut(s) 383, 473, 474, 1040
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 2 cut(s) 50, 263
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 323, 904
RsaNI GTAC 2 cut(s) 322, 903
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 12, 627
Sau3AI GATC 3 cut(s) 7, 357, 961
Sau96I GGNCC 4 cut(s) 383, 473, 474, 1040
ScaI AGTACT 2 cut(s) 323, 904
SchI GAGTC 2 cut(s) 131, 173
ScrFI CCNGG 4 cut(s) 89, 127, 306, 478
SduI GDGCHC 5 cut(s) 188, 477, 726, 746, 767
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 514
Sfr274I CTCGAG 1 cut(s) 754
SgrAI CRCCGGYG 2 cut(s) 328, 388
SlaI CTCGAG 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 2 cut(s) 227, 754
SmoI CTYRAG 2 cut(s) 227, 754
Sse9I AATT 5 cut(s) 655, 700, 716, 824, 967
SspMI CTAG 2 cut(s) 603, 1119
SstI GAGCTC 1 cut(s) 767
StyD4I CCNGG 4 cut(s) 87, 125, 304, 476
StyI CCWWGG 2 cut(s) 276, 829
TaiI ACGT 3 cut(s) 134, 267, 736
TaqI TCGA 6 cut(s) 134, 219, 360, 755, 814, 1032
TasI AATT 5 cut(s) 655, 700, 716, 824, 967
TatI WGTACW 2 cut(s) 321, 902
TauI GCSGC 8 cut(s) 69, 200, 388, 433, 436, 439, 442, 445
TfiI GAWTC 2 cut(s) 536, 1034
Tru1I TTAA 2 cut(s) 12, 627
Tru9I TTAA 2 cut(s) 12, 627
TscAI CASTG 4 cut(s) 592, 673, 751, 792
TseFI GTSAC 4 cut(s) 202, 271, 505, 883
TseI GCWGC 7 cut(s) 102, 316, 596, 599, 620, 854, 1021
Tsp45I GTSAC 4 cut(s) 202, 271, 505, 883
TspDTI ATGAA 6 cut(s) 261, 701, 710, 924, 954, 978
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 4 cut(s) 592, 673, 751, 792
Tth111I GACNNNGTC 2 cut(s) 50, 263
VneI GTGCAC 1 cut(s) 722
XapI RAATTY 3 cut(s) 700, 716, 967
XceI RCATGY 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 754
XspI CTAG 2 cut(s) 603, 1119
ZraI GACGTC 2 cut(s) 132, 265
ZrmI AGTACT 2 cut(s) 323, 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.