Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006577

Physical Location & Seq

Genomic Coordinates Reverse (-)

11517730 .. 11519863

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCAAGTCTTTGCTCTTCCTTCTAGCTCTTTCTCTCCTTGCCTTTGCTCCACTTGGTTTCTGTCACAACAATTACAATTATGGTGGCTATCTCTACCCACAGTTCTATGACCACTCTTGTCCCAAAGCTCAACAGATTGTGCAGTCCATTGTTGCTAAGGCTGTTGCAAGAGAAGCAAGAATGGCGGCTTCTTTGCTTAGGCTGCACTTCCATGACTGCTTTGCAAAGGGTTGTGATGGATCAATCCTTTTGGACAGTAGCAAGAACATAATCACCGAGAAGAGGTCTAACCCGAATCTGAATTCAATCCGAGGGTTTGAAGTAATTGATGAGATCAAATCTGCGATAGAGAAGGAGTGTCCCAGCACTGTGTCTTGTGCTGACATTGTGGCTCTAGCTGCTAGAGACTCCACTGTTTTAGCTGGAGGACCACACTGGGAAGTCCCACTAGGAAGAAGAGACTCTAGAGTCGCGAGTTTAAGCGGCTCCAACAATGAAATCCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGGCAAAAGCTTAACATTGTTGATCTTGTTGCACTATCTGGAAGTCACACTATTGGAAATGCCAGGTGCACCACTTTTAGACAGAGACTTTACAACCAAACAGGAAGAGGGCTTGCTGACTTCACTCTTGACCAGTCATATGCTGCCAGTTTGAGGAACAATTGCCCAAGATCTGGTGGAGACCAAAACCTGTTCTTCCTGGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGAACTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGGTTCAGCAATATGCAGTGAACAACCAGCTTTTCCTTGACCAATTTGCCAAGTCCATGATTAAGATGGGGAATCTTTCACCAATTACAGGTTCAAGGGGAGAGATCAGAAAGAATTGCAGGAAGGTCAACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

334

Amino Acids

36.93

Weight (kDa)

9.37

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	48 - 295	8.6e-86	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36920 AT4G36920 AT5G67180
fragaria_vesca	FvH4_1g16350 FvH4_1g16350 FvH4_1g16350 FvH4_1g16350
malus_domestica	MD02G1176000.v1.1 MD15G1286400.v1.1
prunus_persica	Prupe.6G231700_v2.0.a1 Prupe.6G231700_v2.0.a1
pyrus_communis	pycom02g14210 pycom15g24970
rosa_chinensis	RchiOBHm_Chr2g0106221
rosa_laevigata	RLG00000000196 RLG00000017480
rosa_multiflora	Rmu_sc0008603.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137370
rosa_rugosa	Rorug02G0133300 Rorug02G0133400 Rorug02G0133500
rosa_samantha	Rh2AG184600 Rh2BG195000 Rh2CG189600 Rh2DG190900
rosa_wichuraiana	Rw2G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	188, 486
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	304
AfiI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
AgsI	TTSAA	5 cut(s)	309, 323, 547, 790, 960
AjnI	CCWGG	2 cut(s)	611, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	940, 972
AluBI	AGCT	7 cut(s)	29, 131, 401, 425, 559, 783, 895
AluI	AGCT	7 cut(s)	29, 131, 401, 425, 559, 783, 895
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	4 cut(s)	402, 456, 628, 723
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	3, 811
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	205, 401, 692
ApoI	RAATTY	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	431, 811
AsuHPI	GGTGA	3 cut(s)	268, 529, 936
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	192, 388, 679
BccI	CCATC	2 cut(s)	233, 925
BciT130I	CCWGG	2 cut(s)	613, 749
BcoDI	GTCTC	4 cut(s)	402, 456, 628, 723
BfaI	CTAG	5 cut(s)	26, 398, 405, 452, 468
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
BlsI	GCNGC	5 cut(s)	190, 207, 403, 488, 694
Bme1390I	CCNGG	2 cut(s)	613, 749
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	431, 811
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	613, 749
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	159, 200
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
Bse1I	ACTGG	3 cut(s)	443, 682, 696
BseBI	CCWGG	2 cut(s)	613, 749
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BseNI	ACTGG	3 cut(s)	443, 682, 696
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	192, 388, 679
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	164, 191
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	5, 813
BsiHKAI	GWGCWC	1 cut(s)	620
BslFI	GGGAC	3 cut(s)	108, 348, 431
BslI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BsmAI	GTCTC	4 cut(s)	402, 456, 628, 723
BsmFI	GGGAC	3 cut(s)	108, 348, 431
BsnI	GGCC	2 cut(s)	5, 813
Bso31I	GGTCTC	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	620, 764
Bsp143I	GATC	5 cut(s)	242, 336, 571, 719, 969
Bsp68I	TCGCGA	1 cut(s)	476
BspACI	CCGC	2 cut(s)	188, 486
BspANI	GGCC	2 cut(s)	5, 813
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	723
BsrI	ACTGG	3 cut(s)	443, 682, 696
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	242, 336, 571, 719, 969
Bst2UI	CCWGG	2 cut(s)	613, 749
Bst4CI	ACNGT	4 cut(s)	105, 260, 373, 418
Bst6I	CTCTTC	4 cut(s)	23, 278, 454, 649
BstC8I	GCNNGC	2 cut(s)	663, 815
BstDEI	CTNAG	2 cut(s)	159, 200
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	5 cut(s)	245, 339, 574, 722, 972
BstMAI	GTCTC	4 cut(s)	402, 456, 628, 723
BstMBI	GATC	5 cut(s)	242, 336, 571, 719, 969
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
BstNI	CCWGG	2 cut(s)	613, 749
BstSCI	CCNGG	2 cut(s)	611, 747
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	192, 388, 679
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	5, 813
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	4 cut(s)	369, 414, 436, 888
BtuMI	TCGCGA	1 cut(s)	476
Cac8I	GCNNGC	2 cut(s)	663, 815
Cfr13I	GGNCC	2 cut(s)	431, 811
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	2 cut(s)	215, 922
DdeI	CTNAG	2 cut(s)	159, 200
DpnI	GATC	5 cut(s)	244, 338, 573, 721, 971
DpnII	GATC	5 cut(s)	242, 336, 571, 719, 969
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	23, 278, 454, 649
EarI	CTCTTC	4 cut(s)	23, 278, 454, 649
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	611, 747
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	2 cut(s)	218, 925
FaiI	YATR	8 cut(s)	84, 111, 216, 272, 688, 690, 879, 923
FaqI	GGGAC	3 cut(s)	108, 348, 431
FatI	CATG	2 cut(s)	214, 921
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
FspBI	CTAG	5 cut(s)	26, 398, 405, 452, 468
GluI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	5, 813
Hin1II	CATG	2 cut(s)	218, 925
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	298, 410, 464, 471, 937
HphI	GGTGA	3 cut(s)	268, 529, 936
Hpy166II	GTNNAC	3 cut(s)	618, 886, 994
Hpy188I	TCNGA	4 cut(s)	303, 314, 826, 974
Hpy188III	TCNNGA	7 cut(s)	468, 475, 547, 588, 677, 790, 1002
Hpy8I	GTNNAC	3 cut(s)	618, 886, 994
HpyAV	CCTTC	3 cut(s)	32, 349, 982
HpyCH4III	ACNGT	4 cut(s)	105, 260, 373, 418
HpyCH4V	TGCA	8 cut(s)	145, 170, 208, 227, 581, 618, 881, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
HpyF3I	CTNAG	2 cut(s)	159, 200
Hsp92II	CATG	2 cut(s)	218, 925
Kzo9I	GATC	5 cut(s)	242, 336, 571, 719, 969
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	3 cut(s)	55, 494, 514
Lsp1109I	GCAGC	3 cut(s)	192, 388, 679
MaeI	CTAG	5 cut(s)	26, 398, 405, 452, 468
MaeIII	GTNAC	3 cut(s)	65, 593, 838
MalI	GATC	5 cut(s)	244, 338, 573, 721, 971
MboI	GATC	5 cut(s)	242, 336, 571, 719, 969
MboII	GAAGA	6 cut(s)	10, 295, 468, 471, 666, 736
MfeI	CAATTG	2 cut(s)	709, 863
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	2 cut(s)	620, 764
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	73, 79, 304, 327, 709, 863, 908, 948, 979
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	404, 458, 480
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	6 cut(s)	279, 308, 422, 543, 650, 696
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	482, 561, 819, 927
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	613, 749
MunI	CAATTG	2 cut(s)	709, 863
MvaI	CCWGG	2 cut(s)	613, 749
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	5 cut(s)	242, 336, 571, 719, 969
NlaIII	CATG	2 cut(s)	218, 925
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	65, 593
NruI	TCGCGA	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	298, 937
PflMI	CCANNNNNTGG	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	5 cut(s)	190, 207, 403, 488, 694
PleI	GAGTC	3 cut(s)	404, 458, 479
PpsI	GAGTC	3 cut(s)	404, 458, 479
Psp6I	CCWGG	2 cut(s)	611, 747
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	611, 747
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	431, 811
PsuI	RGATCY	1 cut(s)	719
RruI	TCGCGA	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	482, 561, 819, 927
SatI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
Sau3AI	GATC	5 cut(s)	242, 336, 571, 719, 969
Sau96I	GGNCC	2 cut(s)	431, 811
SchI	GAGTC	3 cut(s)	404, 458, 480
ScrFI	CCNGG	2 cut(s)	613, 749
SduI	GDGCHC	2 cut(s)	620, 764
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	9 cut(s)	73, 79, 304, 327, 709, 863, 908, 948, 979
SsiI	CCGC	2 cut(s)	188, 486
SspMI	CTAG	5 cut(s)	26, 398, 405, 452, 468
StyD4I	CCNGG	2 cut(s)	611, 747
TaaI	ACNGT	4 cut(s)	105, 260, 373, 418
TasI	AATT	9 cut(s)	73, 79, 304, 327, 709, 863, 908, 948, 979
TauI	GCSGC	2 cut(s)	191, 489
TfiI	GAWTC	2 cut(s)	298, 937
Tru1I	TTAA	4 cut(s)	482, 561, 819, 927
Tru9I	TTAA	4 cut(s)	482, 561, 819, 927
TscAI	CASTG	4 cut(s)	376, 421, 443, 888
TseFI	GTSAC	2 cut(s)	65, 593
TseI	GCWGC	3 cut(s)	205, 401, 692
Tsp45I	GTSAC	2 cut(s)	65, 593
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	4 cut(s)	376, 421, 443, 888
Van91I	CCANNNNNTGG	1 cut(s)	722
VneI	GTGCAC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XspI	CTAG	5 cut(s)	26, 398, 405, 452, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.