Rmu_sc0008603.1_g000005

Floral homeotic protein APETALA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008603.1
Physical Location & Seq
Reverse (-)
33909 .. 36656
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008603.1_g000005.1.cds

Sequence Viewer

Length: 1629 bp
atgtgggatctcaatgactctcctgatcagagaccagtggacgatgaatccgaaggctgctcttcgcagaagaccaactccggcgacggagacgacgacaagggcaagagggtcggatccgtgtccaattccagctcatccgccgtggtcatcgaggacggatcggacgtcgacgaagacgcctaccccaacgccaacaggaagcgcgggagcaagatattcgggttctccgtcaccgacgacgacgtcgacggcgctgatccgcagccagtgacccggcagttcttcccgatggacgaatcctccgaaatggaacccacacgggccggcggagctgtgggagcagcggctgcttcgccttcttcttctttcccgcgggcccactgggtcggagtcaagttctgccaggcggactcaggcgggcccggaaaagcagcggagccgtcgccgcagcagcagcagcagcagcagcaacagcagccgatgaagaagagccggcgtgggccccggtcgaggagctctcagtacagaggggtgacgttttaccggaggaccggccgttgggaatcccatatatgggattgcgggaagcaagtttatcttggtggattcgacacagcacatgcagctgctcgagcttatgatagagcggcgatcaagttcaggggagtagaggctgacataaattttaacattgacgactatgaagaagacttgaaacagatgagcaatttaacaaaggaggaatttgtgcatgtacttcgccgacaaagtaccgggttccctagaggtagctcgaaatatagaggtgtgactttgcataagtgtggaagatgggaggctcggatgggccaatttttaggcaaaaagtacgtctatttgggattgtttgatacagagattgatgctgcaagggcctatgacaaagctgcaatcaagtgtaatggcaaagaagctgtcactaactttgatcccagcatttatgagagtgagctgaactcaactgagccttctagtattaatgcaggagatcacaatctggatttgagtttgggaaattcaaaatcgaagaagaataacccggcttttgggactgcacaaaatcacacccatcaaaatgctgcaatggaacaacaacagcagccgtctgcctctatgcaattcgaagccgattggaggaacaatcaaggatttcggcccaagcccagagaggataatgaaatgcgtagaagagatgggtacctggagaatgaaaccatgcagcttctgctccgtacaaacctccaatctccatccccgactcaaatgcacaagtacgggcagtttaatcagttccgaaaccctgccggagagacgccggcacaaatgcctcaccattttcctccacatacttttaacccaccaaattatcaaattcagtttccgagcagcagcgaggtcggagggcgcattgggagtgatctcacactgtcgatgagtgatcgacaacaatggcaatcgggtcatccgtccgagttatttttaaatgctgcagcatcatcaggattcccaccgcaaattagatcaccttcacaaaatggctggctgcagaaaaataacgggttccactctctcgctaggcgcagttga

Protein Analysis

542

Amino Acids

60.37

Weight (kDa)

6.55

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 2 cut(s) 171, 249
Acc65I GGTACC 1 cut(s) 1239
AccB1I GGYRCC 1 cut(s) 1239
AccBSI CCGCTC 1 cut(s) 650
AccI GTMKAC 2 cut(s) 171, 249
AccII CGCG 2 cut(s) 207, 376
AclWI GGATC 6 cut(s) 15, 111, 124, 169, 254, 965
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 4 cut(s) 685, 746, 1057, 1413
AcyI GRCGYC 4 cut(s) 168, 180, 246, 1355
AfaI GTAC 7 cut(s) 527, 759, 775, 872, 1241, 1276, 1316
AfiI CCNNNNNNNGG 6 cut(s) 513, 561, 576, 577, 1088, 1176
AgsI TTSAA 2 cut(s) 718, 1062
AjnI CCWGG 2 cut(s) 405, 1242
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 25, 84, 1346
AlwI GGATC 6 cut(s) 15, 111, 124, 169, 254, 965
AlwNI CAGNNNCTG 2 cut(s) 350, 1267
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 8 cut(s) 324, 378, 422, 503, 556, 850, 915, 1196
ApaI GGGCCC 3 cut(s) 382, 426, 507
ApoI RAATTY 4 cut(s) 685, 746, 1057, 1413
ArsI GACNNNNNNTTYG 4 cut(s) 858, 890, 942, 974
AseI ATTAAT 1 cut(s) 1020
Asp718I GGTACC 1 cut(s) 1239
AspLEI GCGC 4 cut(s) 207, 257, 1449, 1623
AsuC2I CCSGG 5 cut(s) 277, 426, 508, 778, 1082
AsuHPI GGTGA 4 cut(s) 226, 547, 1364, 1557
AsuII TTCGAA 1 cut(s) 1164
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 3 cut(s) 382, 426, 507
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 1239
BanII GRGCYC 4 cut(s) 382, 426, 507, 521
BbsI GAAGAC 3 cut(s) 77, 183, 717
Bbv12I GWGCWC 1 cut(s) 521
BccI CCATC 6 cut(s) 286, 828, 841, 1119, 1229, 1300
BceAI ACGGC 5 cut(s) 128, 268, 427, 543, 1129
BciT130I CCWGG 2 cut(s) 407, 1244
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 5 cut(s) 277, 426, 508, 778, 1082
BcoDI GTCTC 3 cut(s) 25, 84, 1346
BfaI CTAG 3 cut(s) 786, 1014, 1617
BfmI CTRYAG 2 cut(s) 1530, 1586
BfoI RGCGCY 1 cut(s) 258
Bme1390I CCNGG 7 cut(s) 277, 407, 426, 508, 778, 1082, 1244
Bme18I GGWCC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 633
BmrFI CCNGG 7 cut(s) 277, 407, 426, 508, 778, 1082, 1244
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 895, 1544
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 3 cut(s) 77, 183, 717
BplI GAGNNNNNCTC 4 cut(s) 505, 537, 983, 1015
BpmI CTGGAG 1 cut(s) 1265
Bpu14I TTCGAA 1 cut(s) 1164
BpuMI CCSGG 5 cut(s) 277, 426, 508, 778, 1082
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 4 cut(s) 168, 180, 246, 1355
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 144, 374, 506
BsaWI WCCGGW 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 6 cut(s) 513, 561, 576, 577, 1088, 1176
Bse118I RCCGGY 4 cut(s) 326, 495, 554, 1357
Bse1I ACTGG 3 cut(s) 35, 269, 389
Bse3DI GCAATG 1 cut(s) 1131
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 2 cut(s) 407, 1244
BseDI CCNNGG 3 cut(s) 144, 374, 506
BseGI GGATG 4 cut(s) 137, 852, 1292, 1504
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 6 cut(s) 513, 561, 576, 577, 1088, 1176
BseMI GCAATG 1 cut(s) 1131
BseMII CTCAG 3 cut(s) 429, 536, 996
BseNI ACTGG 3 cut(s) 35, 269, 389
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 3 cut(s) 382, 426, 507
BseX3I CGGCCG 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 974
BsgI GTGCAG 1 cut(s) 1080
Bsh1236I CGCG 2 cut(s) 207, 376
Bsh1285I CGRYCG 2 cut(s) 512, 559
BshFI GGCC 8 cut(s) 326, 380, 424, 505, 558, 852, 917, 1198
BshNI GGYRCC 1 cut(s) 1239
BsiEI CGRYCG 2 cut(s) 512, 559
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 1105
BslI CCNNNNNNNGG 6 cut(s) 513, 561, 576, 577, 1088, 1176
BsmAI GTCTC 3 cut(s) 25, 84, 1346
BsmBI CGTCTC 2 cut(s) 84, 1346
BsmFI GGGAC 1 cut(s) 1105
BsnI GGCC 8 cut(s) 326, 380, 424, 505, 558, 852, 917, 1198
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 633
Bsp119I TTCGAA 1 cut(s) 1164
Bsp120I GGGCCC 3 cut(s) 378, 422, 503
Bsp1286I GDGCHC 4 cut(s) 382, 426, 507, 521
BspANI GGCC 8 cut(s) 326, 380, 424, 505, 558, 852, 917, 1198
BspCNI CTCAG 3 cut(s) 428, 535, 997
BspFNI CGCG 2 cut(s) 207, 376
BspMAI CTGCAG 2 cut(s) 1534, 1590
BspPI GGATC 6 cut(s) 15, 111, 124, 169, 254, 965
BspQI GCTCTTC 2 cut(s) 67, 485
BspT104I TTCGAA 1 cut(s) 1164
BspT107I GGYRCC 1 cut(s) 1239
BspTNI GGTCTC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 1131
BsrFI RCCGGY 4 cut(s) 326, 495, 554, 1357
BsrI ACTGG 3 cut(s) 35, 269, 389
BssAI RCCGGY 4 cut(s) 326, 495, 554, 1357
BssECI CCNNGG 3 cut(s) 144, 374, 506
BssNI GRCGYC 4 cut(s) 168, 180, 246, 1355
Bst2UI CCWGG 2 cut(s) 407, 1244
Bst4CI ACNGT 1 cut(s) 1470
Bst6I CTCTTC 3 cut(s) 67, 485, 1225
BstACI GRCGYC 4 cut(s) 168, 180, 246, 1355
BstAPI GCANNNNNTGC 2 cut(s) 350, 1267
BstBI TTCGAA 1 cut(s) 1164
BstC8I GCNNGC 6 cut(s) 328, 378, 422, 497, 1359, 1583
BstDEI CTNAG 3 cut(s) 415, 522, 1005
BstDSI CCRYGG 2 cut(s) 144, 374
BstF5I GGATG 4 cut(s) 137, 852, 1292, 1504
BstFNI CGCG 2 cut(s) 207, 376
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 4 cut(s) 207, 257, 1449, 1623
BstMAI GTCTC 3 cut(s) 25, 84, 1346
BstMCI CGRYCG 2 cut(s) 512, 559
BstNI CCWGG 2 cut(s) 407, 1244
BstNSI RCATGY 2 cut(s) 626, 758
BstSCI CCNGG 7 cut(s) 275, 405, 424, 506, 776, 1080, 1242
BstSFI CTRYAG 2 cut(s) 1530, 1586
BstSLI GKGCMC 3 cut(s) 382, 426, 507
BstUI CGCG 2 cut(s) 207, 376
BstV2I GAAGAC 3 cut(s) 77, 183, 717
BstX2I RGATCY 2 cut(s) 7, 116
BstYI RGATCY 2 cut(s) 7, 116
BstZI CGGCCG 1 cut(s) 556
BsuRI GGCC 8 cut(s) 326, 380, 424, 505, 558, 852, 917, 1198
BtgI CCRYGG 2 cut(s) 144, 374
BtsCI GGATG 4 cut(s) 137, 852, 1292, 1504
BtsIMutI CAGTG 4 cut(s) 42, 276, 382, 1466
Cac8I GCNNGC 6 cut(s) 328, 378, 422, 497, 1359, 1583
CaiI CAGNNNCTG 2 cut(s) 350, 1267
CfoI GCGC 4 cut(s) 207, 257, 1449, 1623
Cfr10I RCCGGY 4 cut(s) 326, 495, 554, 1357
Cfr42I CCGCGG 1 cut(s) 377
CseI GACGC 2 cut(s) 188, 1363
Csp6I GTAC 7 cut(s) 526, 758, 774, 871, 1240, 1275, 1315
CviAII CATG 3 cut(s) 623, 755, 1258
CviQI GTAC 7 cut(s) 526, 758, 774, 871, 1240, 1275, 1315
DdeI CTNAG 3 cut(s) 415, 522, 1005
DraI TTTAAA 1 cut(s) 1524
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 556
EagI CGGCCG 1 cut(s) 556
Eam1104I CTCTTC 3 cut(s) 67, 485, 1225
EarI CTCTTC 3 cut(s) 67, 485, 1225
EciI GGCGGA 3 cut(s) 130, 345, 425
Ecl136II GAGCTC 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 556
Eco24I GRGCYC 4 cut(s) 382, 426, 507, 521
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 552
Eco52I CGGCCG 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 504, 915
EcoRII CCWGG 2 cut(s) 405, 1242
EcoT38I GRGCYC 4 cut(s) 382, 426, 507, 521
Esp3I CGTCTC 2 cut(s) 84, 1346
FaeI CATG 3 cut(s) 626, 758, 1261
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 1105
FatI CATG 3 cut(s) 622, 754, 1257
FauI CCCGC 5 cut(s) 200, 369, 381, 413, 578
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 2 cut(s) 171, 249
FokI GGATG 4 cut(s) 124, 859, 1279, 1491
FriOI GRGCYC 4 cut(s) 382, 426, 507, 521
FspBI CTAG 3 cut(s) 786, 1014, 1617
GlaI GCGC 4 cut(s) 206, 256, 1448, 1622
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 1 cut(s) 1265
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 8 cut(s) 326, 380, 424, 505, 558, 852, 917, 1198
HgaI GACGC 2 cut(s) 188, 1363
HhaI GCGC 4 cut(s) 207, 257, 1449, 1623
Hin1I GRCGYC 4 cut(s) 168, 180, 246, 1355
Hin1II CATG 3 cut(s) 626, 758, 1261
Hin6I GCGC 4 cut(s) 205, 255, 1447, 1621
HinP1I GCGC 4 cut(s) 205, 255, 1447, 1621
HincII GTYRAC 2 cut(s) 172, 250
HindII GTYRAC 2 cut(s) 172, 250
HinfI GANTC 9 cut(s) 17, 47, 299, 393, 413, 566, 609, 1300, 1545
HphI GGTGA 4 cut(s) 226, 547, 1364, 1557
Hpy166II GTNNAC 3 cut(s) 40, 172, 250
Hpy188III TCNNGA 4 cut(s) 23, 289, 1040, 1542
Hpy8I GTNNAC 3 cut(s) 40, 172, 250
HpyAV CCTTC 4 cut(s) 47, 369, 1020, 1578
HpyCH4III ACNGT 1 cut(s) 1470
HpyCH4IV ACGT 4 cut(s) 168, 246, 539, 873
HpyF3I CTNAG 3 cut(s) 415, 522, 1005
HpySE526I ACGT 4 cut(s) 168, 246, 539, 873
Hsp92I GRCGYC 4 cut(s) 168, 180, 246, 1355
Hsp92II CATG 3 cut(s) 626, 758, 1261
HspAI GCGC 4 cut(s) 205, 255, 1447, 1621
KpnI GGTACC 1 cut(s) 1243
KroI GCCGGC 3 cut(s) 326, 495, 1357
KroNI GCCGGC 3 cut(s) 328, 497, 1359
Ksp22I TGATCA 1 cut(s) 25
KspI CCGCGG 1 cut(s) 377
LguI GCTCTTC 2 cut(s) 67, 485
LmnI GCTCC 6 cut(s) 210, 332, 341, 439, 516, 1275
LweI GCATC 2 cut(s) 895, 1544
MaeI CTAG 3 cut(s) 786, 1014, 1617
MaeII ACGT 4 cut(s) 168, 246, 539, 873
MaeIII GTNAC 5 cut(s) 232, 271, 535, 811, 958
MbiI CCGCTC 1 cut(s) 650
MflI RGATCY 2 cut(s) 7, 116
MhlI GDGCHC 4 cut(s) 382, 426, 507, 521
MlyI GAGTC 4 cut(s) 11, 402, 407, 1294
MmeI TCCRAC 3 cut(s) 94, 370, 1420
MroNI GCCGGC 3 cut(s) 326, 495, 1357
MseI TTAA 6 cut(s) 690, 734, 1020, 1326, 1395, 1523
MslI CAYNNNNRTG 2 cut(s) 825, 1116
MspA1I CMGCKG 4 cut(s) 347, 376, 437, 629
MspR9I CCNGG 7 cut(s) 277, 407, 426, 508, 778, 1082, 1244
MvaI CCWGG 2 cut(s) 407, 1244
MvnI CGCG 2 cut(s) 207, 376
NaeI GCCGGC 3 cut(s) 328, 497, 1359
NciI CCSGG 5 cut(s) 277, 426, 508, 778, 1082
NgoMIV GCCGGC 3 cut(s) 326, 495, 1357
NlaIII CATG 3 cut(s) 626, 758, 1261
NmuCI GTSAC 5 cut(s) 232, 271, 535, 811, 958
NspI RCATGY 2 cut(s) 626, 758
NspV TTCGAA 1 cut(s) 1164
PaeR7I CTCGAG 1 cut(s) 633
PciSI GCTCTTC 2 cut(s) 67, 485
PcsI WCGNNNNNNNCGW 7 cut(s) 48, 93, 165, 228, 246, 303, 1505
PdiI GCCGGC 3 cut(s) 328, 497, 1359
PfeI GAWTC 5 cut(s) 47, 299, 566, 609, 1545
PflFI GACNNNGTC 1 cut(s) 245
PleI GAGTC 4 cut(s) 11, 401, 407, 1294
PpsI GAGTC 4 cut(s) 11, 401, 407, 1294
PshBI ATTAAT 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 405, 1242
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 2 cut(s) 405, 1242
PspOMI GGGCCC 3 cut(s) 378, 422, 503
PspXI VCTCGAGB 1 cut(s) 633
PstI CTGCAG 2 cut(s) 1534, 1590
PstNI CAGNNNCTG 2 cut(s) 350, 1267
PsuI RGATCY 2 cut(s) 7, 116
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 7 cut(s) 527, 759, 775, 872, 1241, 1276, 1316
RsaNI GTAC 7 cut(s) 526, 758, 774, 871, 1240, 1275, 1315
RseI CAYNNNNRTG 2 cut(s) 825, 1116
SacI GAGCTC 1 cut(s) 521
SacII CCGCGG 1 cut(s) 377
SalI GTCGAC 2 cut(s) 170, 248
SapI GCTCTTC 2 cut(s) 67, 485
SaqAI TTAA 6 cut(s) 690, 734, 1020, 1326, 1395, 1523
SchI GAGTC 4 cut(s) 11, 402, 407, 1294
ScrFI CCNGG 7 cut(s) 277, 407, 426, 508, 778, 1082, 1244
SduI GDGCHC 4 cut(s) 382, 426, 507, 521
SfaNI GCATC 2 cut(s) 895, 1544
SfcI CTRYAG 2 cut(s) 1530, 1586
Sfr274I CTCGAG 1 cut(s) 633
Sfr303I CCGCGG 1 cut(s) 377
SfuI TTCGAA 1 cut(s) 1164
SgrBI CCGCGG 1 cut(s) 377
SgrDI CGTCGACG 2 cut(s) 170, 248
SinI GGWCC 1 cut(s) 552
SlaI CTCGAG 1 cut(s) 633
SmiMI CAYNNNNRTG 2 cut(s) 825, 1116
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SspMI CTAG 3 cut(s) 786, 1014, 1617
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 7 cut(s) 275, 405, 424, 506, 776, 1080, 1242
TaaI ACNGT 1 cut(s) 1470
TaiI ACGT 4 cut(s) 171, 249, 542, 876
TatI WGTACW 2 cut(s) 525, 757
TauI GCSGC 3 cut(s) 350, 451, 653
TfiI GAWTC 5 cut(s) 47, 299, 566, 609, 1545
Tru1I TTAA 6 cut(s) 690, 734, 1020, 1326, 1395, 1523
Tru9I TTAA 6 cut(s) 690, 734, 1020, 1326, 1395, 1523
TscAI CASTG 4 cut(s) 42, 276, 389, 1473
TseFI GTSAC 5 cut(s) 232, 271, 535, 811, 958
Tsp45I GTSAC 5 cut(s) 232, 271, 535, 811, 958
TspDTI ATGAA 5 cut(s) 60, 500, 720, 1233, 1266
TspGWI ACGGA 6 cut(s) 102, 109, 174, 220, 1262, 1497
TspRI CASTG 4 cut(s) 42, 276, 389, 1473
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 552
VspI ATTAAT 1 cut(s) 1020
XapI RAATTY 4 cut(s) 685, 746, 1057, 1413
XceI RCATGY 2 cut(s) 626, 758
XhoI CTCGAG 1 cut(s) 633
XmiI GTMKAC 2 cut(s) 171, 249
XspI CTAG 3 cut(s) 786, 1014, 1617
ZraI GACGTC 2 cut(s) 169, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.