Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006577

Physical Location & Seq

Genomic Coordinates Reverse (-)

11511372 .. 11513488

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGATATTTACGATTCATTTCCCCACATCTTTCTCGAATTCACAAAACCCTCCCCCAGAACCCTAATCTCCACTCAAGACCCTATCTTTCTTCCCACTTCGCCGCCACTTACACCACCGCCGCCGCGCCGGAGAAGGTCTCGGCGATCGCGGACGAGATCTCGGGGCTCACTCTGCTCGAGGTCTCGGACCTGACGGAGGTGCTGAGAGAGAAACTGGGGATAAAGGAGATGCCGGCGATGATGATGATGATGCCGGGGATGGGAATCGGCGGGCTCCGGGGCGGTGGCAAGGGCGGCGGCGCGGCGGCGGGGAAGGCGGAGGAGAAGAAGGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTTTGATGCGGCGGCGAAGATTAAAGTGATCAAGGAGGTGAGGACGTTTACGGCGTTGGGGTTGAAGGAGGCTAAGGACTTGGTGGAGAAGGCCCCTACGCTGTTGAAGAAGGGGGTTACGAAGGAGGAGGCGGAGTCGATTGTGGCGAAGATGAAGGAAGTTGGTGCTGTAGTTTCGATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

183

Amino Acids

19.7

Weight (kDa)

9.3

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	47 - 89	3.2e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	116 - 182	5.1e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36920 AT4G36920 AT5G67180
fragaria_vesca	FvH4_1g16350 FvH4_1g16350 FvH4_1g16350 FvH4_1g16350
malus_domestica	MD02G1176000.v1.1 MD15G1286400.v1.1
prunus_persica	Prupe.6G231700_v2.0.a1 Prupe.6G231700_v2.0.a1
pyrus_communis	pycom02g14210 pycom15g24970
rosa_chinensis	RchiOBHm_Chr2g0106221
rosa_laevigata	RLG00000000196 RLG00000017480
rosa_multiflora	Rmu_sc0008603.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137370
rosa_rugosa	Rorug02G0133300 Rorug02G0133400 Rorug02G0133500
rosa_samantha	Rh2AG184600 Rh2BG195000 Rh2CG189600 Rh2DG190900
rosa_wichuraiana	Rw2G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	128, 152, 305
AcsI	RAATTY	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	199, 263
AgsI	TTSAA	2 cut(s)	430, 472
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	145, 190
Ama87I	CYCGRG	2 cut(s)	163, 179
AoxI	GGCC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	39
AsiSI	GCGATCGC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	130, 305
AspS9I	GGNCC	2 cut(s)	190, 457
AsuC2I	CCSGG	2 cut(s)	258, 281
AsuHPI	GGTGA	1 cut(s)	415
AvaI	CYCGRG	2 cut(s)	163, 179
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	171, 279
BbsI	GAAGAC	1 cut(s)	344
BccI	CCATC	2 cut(s)	256, 538
BceAI	ACGGC	2 cut(s)	357, 432
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	258, 281
BcoDI	GTCTC	2 cut(s)	145, 190
BfmI	CTRYAG	1 cut(s)	534
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	9 cut(s)	105, 123, 126, 298, 301, 306, 309, 375, 378
BlsI	GCNGC	9 cut(s)	106, 124, 127, 299, 302, 307, 310, 376, 379
Bme1390I	CCNGG	2 cut(s)	258, 281
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	2 cut(s)	163, 179
BmgT120I	GGNCC	2 cut(s)	190, 457
BmiI	GGNNCC	2 cut(s)	278, 459
BmrFI	CCNGG	2 cut(s)	258, 281
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	3 cut(s)	222, 243, 361
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	258, 281
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	2 cut(s)	145, 190
BsaJI	CCNNGG	2 cut(s)	257, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 263
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	257, 280
BseGI	GGATG	1 cut(s)	267
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	199, 263
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	338, 506
Bsh1236I	CGCG	3 cut(s)	128, 152, 305
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	150
BsiHKCI	CYCGRG	2 cut(s)	163, 179
BsiSI	CCGG	4 cut(s)	131, 236, 257, 280
BslI	CCNNNNNNNGG	2 cut(s)	199, 263
BsmAI	GTCTC	2 cut(s)	145, 190
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	2 cut(s)	145, 190
BsoBI	CYCGRG	2 cut(s)	163, 179
Bsp1286I	GDGCHC	2 cut(s)	171, 279
Bsp143I	GATC	3 cut(s)	147, 159, 393
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	128, 152, 305
BspLI	GGNNCC	2 cut(s)	278, 459
BspTNI	GGTCTC	2 cut(s)	145, 190
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	257, 280
BssMI	GATC	3 cut(s)	147, 159, 393
BstC8I	GCNNGC	2 cut(s)	237, 275
BstDEI	CTNAG	2 cut(s)	206, 438
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	3 cut(s)	128, 152, 305
BstHHI	GCGC	2 cut(s)	130, 305
BstKTI	GATC	3 cut(s)	150, 162, 396
BstMAI	GTCTC	2 cut(s)	145, 190
BstMBI	GATC	3 cut(s)	147, 159, 393
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 297, 317
BstSCI	CCNGG	2 cut(s)	256, 279
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	3 cut(s)	128, 152, 305
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	237, 275
CfoI	GCGC	2 cut(s)	130, 305
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	190, 457
CviJI	RGCY	5 cut(s)	169, 277, 358, 437, 458
CviKI_1	RGCY	5 cut(s)	169, 277, 358, 437, 458
DdeI	CTNAG	2 cut(s)	206, 438
DpnI	GATC	3 cut(s)	149, 161, 395
DpnII	GATC	3 cut(s)	147, 159, 393
EciI	GGCGGA	2 cut(s)	335, 512
Eco24I	GRGCYC	2 cut(s)	171, 279
Eco31I	GGTCTC	2 cut(s)	145, 190
Eco47I	GGWCC	1 cut(s)	190
Eco88I	CYCGRG	2 cut(s)	163, 179
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	171, 279
FauI	CCCGC	2 cut(s)	266, 304
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	9 cut(s)	105, 123, 126, 298, 301, 306, 309, 375, 378
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	2 cut(s)	171, 279
Fsp4HI	GCNGC	9 cut(s)	105, 123, 126, 298, 301, 306, 309, 375, 378
GlaI	GCGC	2 cut(s)	129, 304
GluI	GCNGC	9 cut(s)	105, 123, 126, 298, 301, 306, 309, 375, 378
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	4 cut(s)	131, 236, 257, 280
HhaI	GCGC	2 cut(s)	130, 305
Hin6I	GCGC	2 cut(s)	128, 303
HinP1I	GCGC	2 cut(s)	128, 303
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	15, 267, 362, 500
HpaII	CCGG	4 cut(s)	131, 236, 257, 280
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	36, 78
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	8 cut(s)	130, 310, 325, 424, 448, 469, 481, 514
HpyCH4IV	ACGT	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 297, 317
HpyF3I	CTNAG	2 cut(s)	206, 438
HpySE526I	ACGT	1 cut(s)	410
HspAI	GCGC	2 cut(s)	128, 303
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	147, 159, 393
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	7 cut(s)	71, 144, 203, 206, 249, 270, 293
LweI	GCATC	3 cut(s)	222, 243, 361
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	149, 161, 395
MboI	GATC	3 cut(s)	147, 159, 393
MboII	GAAGA	6 cut(s)	84, 340, 349, 394, 484, 526
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	171, 279
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	9 cut(s)	62, 175, 193, 316, 394, 399, 427, 484, 487
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	1 cut(s)	387
MspI	CCGG	4 cut(s)	131, 236, 257, 280
MspR9I	CCNGG	2 cut(s)	258, 281
MvnI	CGCG	3 cut(s)	128, 152, 305
MwoI	GCNNNNNNNGC	3 cut(s)	175, 297, 317
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	2 cut(s)	258, 281
NdeII	GATC	3 cut(s)	147, 159, 393
NgoMIV	GCCGGC	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	278, 459
NmeAIII	GCCGAG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 509
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	15, 267, 362
PkrI	GCNGC	9 cut(s)	106, 124, 127, 299, 302, 307, 310, 376, 379
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	278, 459
PspPI	GGNCC	2 cut(s)	190, 457
PspXI	VCTCGAGB	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	159
PvuI	CGATCG	1 cut(s)	150
RgaI	GCGATCGC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	9 cut(s)	105, 123, 126, 298, 301, 306, 309, 375, 378
Sau3AI	GATC	3 cut(s)	147, 159, 393
Sau96I	GGNCC	2 cut(s)	190, 457
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	258, 281
SduI	GDGCHC	2 cut(s)	171, 279
SetI	ASST	7 cut(s)	141, 186, 195, 204, 360, 405, 413
SfaAI	GCGATCGC	1 cut(s)	150
SfaNI	GCATC	3 cut(s)	222, 243, 361
SfcI	CTRYAG	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	179
SgfI	GCGATCGC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	76, 179
SmoI	CTYRAG	2 cut(s)	76, 179
Sse9I	AATT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	256, 279
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	4 cut(s)	37, 180, 503, 542
TasI	AATT	1 cut(s)	39
TauI	GCSGC	9 cut(s)	107, 125, 128, 300, 303, 308, 311, 377, 380
TfiI	GAWTC	3 cut(s)	15, 267, 362
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	7, 533
TspGWI	ACGGA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.