AT4G37540

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012765
Physical Location & Seq
Reverse (-)
17639393 .. 17640925
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37540.1

Sequence Viewer

Length: 723 bp
ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGCATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCCACGCCACCGTCTTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAACTCCAACGTCCTGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAATCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCGGTTGAGACTGTTCTTCGCGGCGGAACTTTACGACCGATATCAGATCTTCTTGAATCTCCGTCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACGTTTCAAGAAACCAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTGGTTAACCGAAAACGATTGAAGTCCGATTCGGATCTTGATCTCCAAGTGAACCACGGTTTAACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTGGTTAAGGGTGATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAAAATGGGATGAGAGGAGATAATAAACAAAAAAGAAACAAAGGAGAGAAAAAGTTATTGAACCTTTTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009965 GO:0010016 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0060776 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

240

Amino Acids

26.61

Weight (kDa)

8.81

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 1.9e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 270
AccBSI CCGCTC 2 cut(s) 245, 542
AccII CGCG 1 cut(s) 309
AciI CCGC 7 cut(s) 84, 245, 287, 290, 309, 312, 540
AclWI GGATC 3 cut(s) 83, 438, 510
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 638
AfaI GTAC 2 cut(s) 165, 552
AfiI CCNNNNNNNGG 3 cut(s) 239, 270, 289
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 6 cut(s) 71, 209, 344, 405, 490, 709
AjnI CCWGG 1 cut(s) 263
AloI GAACNNNNNNTCC 3 cut(s) 38, 214, 246
Alw26I GTCTC 2 cut(s) 146, 290
AlwI GGATC 3 cut(s) 83, 438, 510
AlwNI CAGNNNCTG 1 cut(s) 270
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 553
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 238, 611
AsuII TTCGAA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 103, 369
BccI CCATC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 265
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 146, 290
BglII AGATCT 1 cut(s) 334
BisI GCNGC 2 cut(s) 288, 310
BlsI GCNGC 2 cut(s) 289, 311
Bme1390I CCNGG 2 cut(s) 265, 609
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 265, 609
BmsI GCATC 2 cut(s) 60, 400
BpiI GAAGAC 2 cut(s) 103, 369
BpmI CTGGAG 1 cut(s) 424
Bpu14I TTCGAA 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 277
BsaBI GATNNNNATC 2 cut(s) 501, 507
BsaHI GRCGYC 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 523
BsaWI WCCGGW 2 cut(s) 232, 553
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 270, 289
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 501, 507
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 3 cut(s) 20, 51, 663
BseJI GATNNNNATC 2 cut(s) 501, 507
BseLI CCNNNNNNNGG 3 cut(s) 239, 270, 289
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 148, 678
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 553
BsiEI CGRYCG 1 cut(s) 326
BsiSI CCGG 4 cut(s) 233, 545, 554, 608
BslI CCNNNNNNNGG 3 cut(s) 239, 270, 289
BsmAI GTCTC 2 cut(s) 146, 290
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 28
Bsp143I GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
BspACI CCGC 7 cut(s) 84, 245, 287, 290, 309, 312, 540
BspANI GGCC 1 cut(s) 99
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 3 cut(s) 83, 438, 510
BspT104I TTCGAA 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 2 cut(s) 245, 542
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
BssNI GRCGYC 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 4 cut(s) 109, 226, 301, 527
BstACI GRCGYC 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 3 cut(s) 20, 51, 663
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 7 cut(s) 78, 337, 363, 446, 505, 511, 604
BstMAI GTCTC 2 cut(s) 146, 290
BstMBI GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
BstMCI CGRYCG 1 cut(s) 326
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 263, 607
BstUI CGCG 1 cut(s) 309
BstV2I GAAGAC 2 cut(s) 103, 369
BstX2I RGATCY 3 cut(s) 334, 443, 502
BstYI RGATCY 3 cut(s) 334, 443, 502
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 3 cut(s) 20, 51, 663
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 164, 551
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 2 cut(s) 48, 145
CviJI RGCY 2 cut(s) 99, 548
CviKI_1 RGCY 2 cut(s) 99, 548
CviQI GTAC 2 cut(s) 164, 551
DpnI GATC 7 cut(s) 77, 336, 362, 445, 504, 510, 603
DpnII GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
EciI GGCGGA 2 cut(s) 73, 327
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 263
EcoRV GATATC 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 53
FaeI CATG 2 cut(s) 51, 148
FaiI YATR 4 cut(s) 49, 146, 254, 280
FatI CATG 2 cut(s) 47, 144
Fnu4HI GCNGC 2 cut(s) 288, 310
FokI GGATG 3 cut(s) 27, 38, 670
Fsp4HI GCNGC 2 cut(s) 288, 310
GluI GCNGC 2 cut(s) 288, 310
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 1 cut(s) 99
HapII CCGG 4 cut(s) 233, 545, 554, 608
Hin1I GRCGYC 1 cut(s) 638
Hin1II CATG 2 cut(s) 51, 148
HincII GTYRAC 2 cut(s) 238, 475
HindII GTYRAC 2 cut(s) 238, 475
HinfI GANTC 8 cut(s) 80, 89, 229, 344, 374, 464, 497, 626
HpaI GTTAAC 2 cut(s) 238, 475
HpaII CCGG 4 cut(s) 233, 545, 554, 608
HphI GGTGA 2 cut(s) 238, 611
Hpy166II GTNNAC 4 cut(s) 238, 261, 475, 520
Hpy188I TCNGA 5 cut(s) 334, 382, 496, 502, 622
Hpy188III TCNNGA 5 cut(s) 341, 395, 405, 441, 506
Hpy8I GTNNAC 4 cut(s) 238, 261, 475, 520
Hpy99I CGWCG 7 cut(s) 119, 355, 454, 577, 580, 640, 643
HpyAV CCTTC 2 cut(s) 65, 77
HpyCH4III ACNGT 4 cut(s) 109, 226, 301, 527
HpyCH4IV ACGT 4 cut(s) 178, 276, 399, 638
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpySE526I ACGT 4 cut(s) 178, 276, 399, 638
Hsp92I GRCGYC 1 cut(s) 638
Hsp92II CATG 2 cut(s) 51, 148
KspAI GTTAAC 2 cut(s) 238, 475
Kzo9I GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
LmnI GCTCC 2 cut(s) 242, 547
LweI GCATC 2 cut(s) 60, 400
MaeII ACGT 4 cut(s) 178, 276, 399, 638
MaeIII GTNAC 2 cut(s) 90, 631
MalI GATC 7 cut(s) 77, 336, 362, 445, 504, 510, 603
MbiI CCGCTC 2 cut(s) 245, 542
MboI GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
MboII GAAGA 6 cut(s) 17, 103, 296, 329, 369, 557
MflI RGATCY 3 cut(s) 334, 443, 502
MluCI AATT 1 cut(s) 122
MlyI GAGTC 3 cut(s) 98, 383, 458
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 5 cut(s) 169, 448, 579, 616, 656
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 5 cut(s) 237, 474, 530, 594, 721
MspI CCGG 4 cut(s) 233, 545, 554, 608
MspR9I CCNGG 2 cut(s) 265, 609
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 309
NciI CCSGG 1 cut(s) 609
NdeII GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
NlaIII CATG 2 cut(s) 51, 148
NlaIV GGNNCC 1 cut(s) 558
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 1 cut(s) 51
NspV TTCGAA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 5 cut(s) 80, 229, 344, 497, 626
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 2 cut(s) 289, 311
PleI GAGTC 3 cut(s) 97, 382, 458
PpsI GAGTC 3 cut(s) 97, 382, 458
Ppu21I YACGTR 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 270
PsuI RGATCY 3 cut(s) 334, 443, 502
RsaI GTAC 2 cut(s) 165, 552
RsaNI GTAC 2 cut(s) 164, 551
SaqAI TTAA 5 cut(s) 237, 474, 530, 594, 721
SatI GCNGC 2 cut(s) 288, 310
Sau3AI GATC 7 cut(s) 75, 334, 360, 443, 502, 508, 601
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 3 cut(s) 98, 383, 458
ScrFI CCNGG 2 cut(s) 265, 609
SetI ASST 9 cut(s) 37, 169, 181, 279, 402, 440, 591, 641, 714
SfaNI GCATC 2 cut(s) 60, 400
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 1 cut(s) 261
Sse9I AATT 1 cut(s) 122
SsiI CCGC 7 cut(s) 84, 245, 287, 290, 309, 312, 540
StyD4I CCNGG 2 cut(s) 263, 607
TaaI ACNGT 4 cut(s) 109, 226, 301, 527
TaiI ACGT 4 cut(s) 181, 279, 402, 641
TaqI TCGA 2 cut(s) 28, 78
TaqII GACCGA 1 cut(s) 340
TasI AATT 1 cut(s) 122
TauI GCSGC 2 cut(s) 290, 312
TfiI GAWTC 5 cut(s) 80, 229, 344, 497, 626
Tru1I TTAA 5 cut(s) 237, 474, 530, 594, 721
Tru9I TTAA 5 cut(s) 237, 474, 530, 594, 721
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 142, 473
TspGWI ACGGA 5 cut(s) 151, 255, 339, 467, 561
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 51
ZraI GACGTC 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.