MD00G1015800.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0012765
Physical Location & Seq
Forward (+)
2268408 .. 2270102
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1015800.v1.1.491

Sequence Viewer

Length: 753 bp
ATGAGTTGCAACGGCTGTCGAGTTCTCCGAAAGGGCTGCAGCGAGTCATGCATGCTCCGCCCCTGCCTCCAGTGGATCGAAACCCCCGAAGCCCAAGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGATTCCCAACGACCCGTTCTGTTTCAGTCCTTGTTGTTTGAAGCCTGCGGCCGTACGGTCAATCCGGTCAACGGAGCGGTTGGGCTGCTCTGGACCGGCAACTGGCACGTCTGCCAGGCCGCCGTCGAAACCGTCCTCCTCGGCGGCACGCTCCGGCCGATTCCCGAGCTCCTCGGCGGAGCGTCCACTCTCGACGAGGCCGACGAGGCCGACGTCGGCGGCGTCATCAACTGTACGGACATGTGGAGGCTCCGAGATCCGAGTCACAACTCCGGTTCCTCCTCCCGGTTCCCCAGCTCCCGGTCCGCCAGGGCCTCCTCGCCGAAACGCAAGCGGTCCACAGCCGATGACGAGTCGTCCACCAAGTTACTCCAGCTCCAGCACCACGCGGATCTGGATCTCCGGCTGACCCCAACCATGTCTTTCAAACCCAAGCCCAAACCCGAGACCCGACGACCCGGAACCCCGTCCATGAACTCGGAGGAGTCCGGCGTCACAACGTGCTTCGAGAGCGGCTTCGCGGATCACCATCGGTCCTCTTACTCCGTGGGACCGGAGAGAAAGCTTCTCAACTTGTTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

251

Amino Acids

27.23

Weight (kDa)

8.4

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 101 6.8e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 384
AccBSI CCGCTC 2 cut(s) 245, 681
AccII CGCG 3 cut(s) 135, 557, 689
AclWI GGATC 5 cut(s) 83, 419, 567, 573, 699
AcoI YGGCCR 3 cut(s) 130, 217, 323
AcyI GRCGYC 3 cut(s) 381, 390, 660
AdeI CACNNNGTG 1 cut(s) 669
AfaI GTAC 2 cut(s) 223, 403
AfiI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 468
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 209, 595
AhdI GACNNNNNGTC 1 cut(s) 523
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 2 cut(s) 282, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 4 cut(s) 337, 465, 544, 733
AluI AGCT 4 cut(s) 337, 465, 544, 733
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 5 cut(s) 83, 419, 567, 573, 699
Ama87I CYCGRG 2 cut(s) 332, 611
AoxI GGCC 9 cut(s) 97, 130, 139, 217, 285, 323, 366, 375, 480
ApeKI GCWGC 3 cut(s) 36, 39, 253
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 6 cut(s) 261, 471, 480, 504, 702, 719
AsuC2I CCSGG 3 cut(s) 454, 469, 627
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 332, 611
AvaII GGWCC 5 cut(s) 261, 471, 504, 702, 719
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 23, 51, 240
BccI CCATC 1 cut(s) 705
BceAI ACGGC 4 cut(s) 28, 146, 204, 275
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 2 cut(s) 284, 478
BcnI CCSGG 3 cut(s) 454, 469, 627
BcoDI GTCTC 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 37
BglI GCCNNNNNGGC 2 cut(s) 138, 374
BisI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 682
BlsI GCNGC 9 cut(s) 38, 41, 134, 218, 255, 289, 314, 389, 683
Bme1390I CCNGG 5 cut(s) 284, 454, 469, 478, 627
Bme18I GGWCC 5 cut(s) 261, 471, 504, 702, 719
BmeRI GACNNNNNGTC 1 cut(s) 523
BmeT110I CYCGRG 2 cut(s) 332, 611
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 6 cut(s) 261, 471, 480, 504, 702, 719
BmiI GGNNCC 5 cut(s) 419, 445, 458, 631, 720
BmrFI CCNGG 5 cut(s) 284, 454, 469, 478, 627
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 3 cut(s) 53, 524, 530
BpuMI CCSGG 3 cut(s) 454, 469, 627
BsaBI GATNNNNATC 2 cut(s) 564, 696
BsaHI GRCGYC 3 cut(s) 381, 390, 660
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 5 cut(s) 94, 307, 340, 477, 714
BsaWI WCCGGW 3 cut(s) 232, 440, 721
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 270, 453, 468
Bse118I RCCGGY 2 cut(s) 137, 263
Bse1I ACTGG 2 cut(s) 70, 275
Bse8I GATNNNNATC 2 cut(s) 564, 696
BseBI CCWGG 2 cut(s) 284, 478
BseDI CCNNGG 5 cut(s) 94, 307, 340, 477, 714
BseJI GATNNNNATC 2 cut(s) 564, 696
BseLI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 468
BseNI ACTGG 2 cut(s) 70, 275
BseRI GAGGAG 5 cut(s) 296, 329, 439, 475, 665
BseX3I CGGCCG 3 cut(s) 130, 217, 323
BseXI GCAGC 3 cut(s) 23, 51, 240
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 3 cut(s) 135, 557, 689
Bsh1285I CGRYCG 3 cut(s) 133, 220, 326
BshFI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 482
BsiEI CGRYCG 3 cut(s) 133, 220, 326
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 332, 611
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 149, 732
BslI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 468
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 149, 732
BsnI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 482
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 2 cut(s) 332, 611
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 5 cut(s) 75, 424, 559, 565, 691
BspANI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 482
BspFNI CGCG 3 cut(s) 135, 557, 689
BspLI GGNNCC 5 cut(s) 419, 445, 458, 631, 720
BspMAI CTGCAG 1 cut(s) 41
BspPI GGATC 5 cut(s) 83, 419, 567, 573, 699
BspTNI GGTCTC 1 cut(s) 608
BsrBI CCGCTC 2 cut(s) 245, 681
BsrFI RCCGGY 2 cut(s) 137, 263
BsrI ACTGG 2 cut(s) 70, 275
BssAI RCCGGY 2 cut(s) 137, 263
BssECI CCNNGG 5 cut(s) 94, 307, 340, 477, 714
BssMI GATC 5 cut(s) 75, 424, 559, 565, 691
BssNI GRCGYC 3 cut(s) 381, 390, 660
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 284, 478
Bst4CI ACNGT 4 cut(s) 109, 226, 301, 401
BstACI GRCGYC 3 cut(s) 381, 390, 660
BstC8I GCNNGC 5 cut(s) 53, 139, 214, 317, 500
BstDSI CCRYGG 1 cut(s) 714
BstFNI CGCG 3 cut(s) 135, 557, 689
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 78, 427, 562, 568, 694
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 5 cut(s) 75, 424, 559, 565, 691
BstMCI CGRYCG 3 cut(s) 133, 220, 326
BstMWI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 678
BstNI CCWGG 2 cut(s) 284, 478
BstNSI RCATGY 2 cut(s) 55, 412
BstSCI CCNGG 5 cut(s) 282, 452, 467, 476, 625
BstSFI CTRYAG 1 cut(s) 37
BstUI CGCG 3 cut(s) 135, 557, 689
BstV1I GCAGC 3 cut(s) 23, 51, 240
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 3 cut(s) 424, 559, 565
BstYI RGATCY 3 cut(s) 424, 559, 565
BstZI CGGCCG 3 cut(s) 130, 217, 323
BsuRI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 482
BtgI CCRYGG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 5 cut(s) 53, 139, 214, 317, 500
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 2 cut(s) 137, 263
Cfr13I GGNCC 6 cut(s) 261, 471, 480, 504, 702, 719
CpoI CGGWCCG 1 cut(s) 471
CseI GACGC 3 cut(s) 339, 379, 649
Csp6I GTAC 2 cut(s) 222, 402
CspI CGGWCCG 1 cut(s) 471
CviAII CATG 6 cut(s) 48, 52, 145, 409, 586, 640
CviQI GTAC 2 cut(s) 222, 402
DpnI GATC 5 cut(s) 77, 426, 561, 567, 693
DpnII GATC 5 cut(s) 75, 424, 559, 565, 691
DraIII CACNNNGTG 1 cut(s) 669
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 3 cut(s) 130, 217, 323
EagI CGGCCG 3 cut(s) 130, 217, 323
Eam1105I GACNNNNNGTC 1 cut(s) 523
EciI GGCGGA 4 cut(s) 47, 148, 360, 463
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 3 cut(s) 130, 217, 323
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 5 cut(s) 261, 471, 504, 702, 719
Eco52I CGGCCG 3 cut(s) 130, 217, 323
Eco53kI GAGCTC 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 332, 611
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 282, 476
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 6 cut(s) 51, 55, 148, 412, 589, 643
FaiI YATR 6 cut(s) 49, 53, 146, 410, 587, 641
FaqI GGGAC 2 cut(s) 149, 732
FatI CATG 6 cut(s) 47, 51, 144, 408, 585, 639
Fnu4HI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 682
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 682
GlaI GCGC 1 cut(s) 136
GluI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 682
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 3 cut(s) 53, 524, 530
HaeIII GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 482
HgaI GACGC 3 cut(s) 339, 379, 649
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 3 cut(s) 381, 390, 660
Hin1II CATG 6 cut(s) 51, 55, 148, 412, 589, 643
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 6 cut(s) 44, 170, 328, 430, 521, 653
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 4 cut(s) 238, 354, 507, 528
Hpy188I TCNGA 4 cut(s) 29, 422, 429, 649
Hpy188III TCNNGA 5 cut(s) 259, 332, 359, 563, 676
Hpy8I GTNNAC 4 cut(s) 238, 354, 507, 528
Hpy99I CGWCG 7 cut(s) 119, 296, 365, 374, 383, 386, 624
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 4 cut(s) 109, 226, 301, 401
HpyCH4IV ACGT 3 cut(s) 276, 381, 668
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 678
HpySE526I ACGT 3 cut(s) 276, 381, 668
Hsp92I GRCGYC 3 cut(s) 381, 390, 660
Hsp92II CATG 6 cut(s) 51, 55, 148, 412, 589, 643
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 75, 424, 559, 565, 691
LmnI GCTCC 8 cut(s) 60, 242, 324, 342, 347, 423, 470, 549
Lsp1109I GCAGC 3 cut(s) 23, 51, 240
MaeII ACGT 3 cut(s) 276, 381, 668
MaeIII GTNAC 3 cut(s) 431, 534, 661
MalI GATC 5 cut(s) 77, 426, 561, 567, 693
MbiI CCGCTC 2 cut(s) 245, 681
MboI GATC 5 cut(s) 75, 424, 559, 565, 691
MboII GAAGA 2 cut(s) 103, 118
MflI RGATCY 3 cut(s) 424, 559, 565
MhlI GDGCHC 1 cut(s) 339
MlyI GAGTC 4 cut(s) 53, 439, 530, 662
Mph1103I ATGCAT 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 137
MspR9I CCNGG 5 cut(s) 284, 454, 469, 478, 627
MvaI CCWGG 2 cut(s) 284, 478
MvnI CGCG 3 cut(s) 135, 557, 689
MwoI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 678
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 3 cut(s) 454, 469, 627
NdeII GATC 5 cut(s) 75, 424, 559, 565, 691
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 6 cut(s) 51, 55, 148, 412, 589, 643
NlaIV GGNNCC 5 cut(s) 419, 445, 458, 631, 720
NmeAIII GCCGAG 2 cut(s) 288, 321
NmuCI GTSAC 2 cut(s) 431, 661
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 55, 412
PaeI GCATGC 1 cut(s) 55
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 7 cut(s) 25, 84, 323, 366, 369, 378, 387
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 170, 328
Pfl23II CGTACG 1 cut(s) 221
PkrI GCNGC 9 cut(s) 38, 41, 134, 218, 255, 289, 314, 389, 683
PleI GAGTC 4 cut(s) 52, 438, 529, 661
PpsI GAGTC 4 cut(s) 52, 438, 529, 661
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 282, 476
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 282, 476
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 5 cut(s) 419, 445, 458, 631, 720
PspPI GGNCC 6 cut(s) 261, 471, 480, 504, 702, 719
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 3 cut(s) 424, 559, 565
RsaI GTAC 2 cut(s) 223, 403
RsaNI GTAC 2 cut(s) 222, 402
Rsr2I CGGWCCG 1 cut(s) 471
RsrII CGGWCCG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 339
SatI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 682
Sau3AI GATC 5 cut(s) 75, 424, 559, 565, 691
Sau96I GGNCC 6 cut(s) 261, 471, 480, 504, 702, 719
SchI GAGTC 4 cut(s) 53, 439, 530, 662
ScrFI CCNGG 5 cut(s) 284, 454, 469, 478, 627
SduI GDGCHC 1 cut(s) 339
SetI ASST 7 cut(s) 279, 339, 384, 467, 546, 671, 735
SfcI CTRYAG 1 cut(s) 37
SfiI GGCCNNNNNGGCC 2 cut(s) 138, 374
SinI GGWCC 5 cut(s) 261, 471, 504, 702, 719
SphI GCATGC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 5 cut(s) 282, 452, 467, 476, 625
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 4 cut(s) 109, 226, 301, 401
TaiI ACGT 3 cut(s) 279, 384, 671
TaqI TCGA 5 cut(s) 19, 78, 294, 360, 675
TaqII GACCGA 1 cut(s) 690
TauI GCSGC 6 cut(s) 135, 219, 290, 315, 390, 684
TfiI GAWTC 2 cut(s) 170, 328
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 2 cut(s) 431, 661
TseI GCWGC 3 cut(s) 36, 39, 253
Tsp45I GTSAC 2 cut(s) 431, 661
TspDTI ATGAA 2 cut(s) 142, 656
TspGWI ACGGA 3 cut(s) 255, 419, 703
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 5 cut(s) 261, 471, 504, 702, 719
XceI RCATGY 2 cut(s) 55, 412
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.