FvH4_1g17380

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012765
Physical Location & Seq
Reverse (-)
10058517 .. 10060467
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17380.t1

Sequence Viewer

Length: 753 bp
ATGAGCTGCAACGGCTGCCGTGTTCTCCGCAAGGGCTGCAGCGAGTCCTGCATCTTACGTCCTTGTCTCCAGTGGATCGAAACCCCCGAAGCTCAGGGCCACGCTACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCCCAGCGACCCGTTCTGTTTCAATCTCTCTTGTTCGAGGCTTGCGGCCGTACGGTCAACCCGGTCAACGGCGCTGTGGGGCTGCTCTGGACCGGGAACTGGCAGGTCTGTCAGGCCGCGGTGGAGACTGTTCTCCGGGGAGGGACTCTGCGGCCGATTCCGGAGCTGGTTTCGGGTTCCGGTTCGGGTTTGACTCCCGACGAGGCTTCCGAGGCTGACGGGACTGTCTGTACTGACATGTGGAGGCTCCGAGATCCGACTCACAATTCCGGCACCTCTTCCCGGTTCACCAACTCGCGTTCCAAGACGGCTTCTTGTTCTCCGACGACGAAGCGCAAGAGACCAGACGGCGAGTCGTTGAAGGCGCTGCAGCACGCGGATCTGGACCTGAGGTTGACTCCCACGCTCGCTTTCAGACCAAAACCCAAACCCGACACCCGACGACCCGGCTCGCCGTCTATGAACTCCGAAGAGTCGGTGGTTACAACGTGCTTCGAGTCTAACGGGTTCGCGGAGCAGTACCCGAACCCGAACGGAGGAGTACTTGGATCCGAGATAAAGCTACTCAACCTGTTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

251

Amino Acids

27.02

Weight (kDa)

8.56

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 2.1e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 5 cut(s) 135, 290, 469, 548, 683
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 9 cut(s) 28, 133, 159, 216, 288, 290, 322, 548, 683
AclWI GGATC 5 cut(s) 83, 419, 558, 714, 727
AcoI YGGCCR 3 cut(s) 130, 217, 323
AfaI GTAC 4 cut(s) 223, 403, 692, 714
AfiI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 707
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 194, 532
AhdI GACNNNNNGTC 1 cut(s) 523
AluBI AGCT 4 cut(s) 6, 92, 337, 733
AluI AGCT 4 cut(s) 6, 92, 337, 733
Alw26I GTCTC 3 cut(s) 71, 290, 505
AlwI GGATC 5 cut(s) 83, 419, 558, 714, 727
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 6 cut(s) 97, 130, 139, 217, 285, 323
ApeKI GCWGC 7 cut(s) 6, 15, 36, 39, 253, 538, 541
AspLEI GCGC 4 cut(s) 137, 245, 507, 538
AspS9I GGNCC 3 cut(s) 97, 261, 556
AsuC2I CCSGG 5 cut(s) 233, 265, 308, 454, 618
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 2 cut(s) 261, 556
AxyI CCTNAGG 1 cut(s) 560
BamHI GGATCC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 6 cut(s) 2, 23, 51, 240, 525, 553
BceAI ACGGC 8 cut(s) 3, 28, 146, 204, 256, 495, 535, 610
BcnI CCSGG 5 cut(s) 233, 265, 308, 454, 618
BcoDI GTCTC 3 cut(s) 71, 290, 505
BfmI CTRYAG 2 cut(s) 37, 539
BfoI RGCGCY 2 cut(s) 246, 539
BfuAI ACCTGC 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 5 cut(s) 233, 265, 308, 454, 618
Bme18I GGWCC 2 cut(s) 261, 556
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 97, 261, 556
BmiI GGNNCC 4 cut(s) 349, 419, 445, 721
BmrFI CCNGG 5 cut(s) 233, 265, 308, 454, 618
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 93
BpuMI CCSGG 5 cut(s) 233, 265, 308, 454, 618
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 288, 307, 381
BsaWI WCCGGW 2 cut(s) 331, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 270, 453, 707
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 70, 275
Bse21I CCTNAGG 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 288, 307, 381
BseLI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 707
BseMII CTCAG 2 cut(s) 107, 551
BseNI ACTGG 2 cut(s) 70, 275
BseRI GAGGAG 1 cut(s) 723
BseX3I CGGCCG 3 cut(s) 130, 217, 323
BseXI GCAGC 6 cut(s) 2, 23, 51, 240, 525, 553
BseYI CCCAGC 1 cut(s) 174
Bsh1236I CGCG 5 cut(s) 135, 290, 469, 548, 683
Bsh1285I CGRYCG 3 cut(s) 133, 220, 326
BshFI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BshNI GGYRCC 1 cut(s) 443
BsiEI CGRYCG 3 cut(s) 133, 220, 326
BsiSI CCGG 9 cut(s) 138, 233, 264, 307, 332, 351, 441, 454, 618
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 3 cut(s) 149, 328, 406
BslI CCNNNNNNNGG 4 cut(s) 239, 270, 453, 707
BsmAI GTCTC 3 cut(s) 71, 290, 505
BsmFI GGGAC 3 cut(s) 149, 328, 406
BsnI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
Bso31I GGTCTC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 4 cut(s) 75, 424, 550, 719
BspACI CCGC 9 cut(s) 28, 133, 159, 216, 288, 290, 322, 548, 683
BspANI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BspCNI CTCAG 2 cut(s) 106, 552
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 5 cut(s) 135, 290, 469, 548, 683
BspLI GGNNCC 4 cut(s) 349, 419, 445, 721
BspMAI CTGCAG 2 cut(s) 41, 543
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 5 cut(s) 83, 419, 558, 714, 727
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 2 cut(s) 70, 275
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 288, 307, 381
BssMI GATC 4 cut(s) 75, 424, 550, 719
Bst4CI ACNGT 4 cut(s) 109, 226, 301, 397
Bst6I CTCTTC 2 cut(s) 454, 636
BstAPI GCANNNNNTGC 2 cut(s) 15, 36
BstC8I GCNNGC 5 cut(s) 139, 214, 546, 579, 623
BstDEI CTNAG 2 cut(s) 93, 560
BstDSI CCRYGG 1 cut(s) 288
BstFNI CGCG 5 cut(s) 135, 290, 469, 548, 683
BstH2I RGCGCY 2 cut(s) 246, 539
BstHHI GCGC 4 cut(s) 137, 245, 507, 538
BstKTI GATC 4 cut(s) 78, 427, 553, 722
BstMAI GTCTC 3 cut(s) 71, 290, 505
BstMBI GATC 4 cut(s) 75, 424, 550, 719
BstMCI CGRYCG 3 cut(s) 133, 220, 326
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 5 cut(s) 231, 263, 306, 452, 616
BstSFI CTRYAG 2 cut(s) 37, 539
BstUI CGCG 5 cut(s) 135, 290, 469, 548, 683
BstV1I GCAGC 6 cut(s) 2, 23, 51, 240, 525, 553
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 3 cut(s) 424, 550, 719
BstYI RGATCY 3 cut(s) 424, 550, 719
BstZI CGGCCG 3 cut(s) 130, 217, 323
Bsu36I CCTNAGG 1 cut(s) 560
BsuRI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BtgI CCRYGG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 5 cut(s) 139, 214, 546, 579, 623
CfoI GCGC 4 cut(s) 137, 245, 507, 538
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 97, 261, 556
Cfr42I CCGCGG 1 cut(s) 291
Csp6I GTAC 4 cut(s) 222, 402, 691, 713
CviAII CATG 2 cut(s) 145, 409
CviQI GTAC 4 cut(s) 222, 402, 691, 713
DdeI CTNAG 2 cut(s) 93, 560
DpnI GATC 4 cut(s) 77, 426, 552, 721
DpnII GATC 4 cut(s) 75, 424, 550, 719
DrdI GACNNNNNNGTC 1 cut(s) 395
DriI GACNNNNNGTC 1 cut(s) 523
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 3 cut(s) 130, 217, 323
EagI CGGCCG 3 cut(s) 130, 217, 323
Eam1104I CTCTTC 2 cut(s) 454, 636
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 2 cut(s) 454, 636
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 3 cut(s) 130, 217, 323
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 261, 556
Eco52I CGGCCG 3 cut(s) 130, 217, 323
Eco81I CCTNAGG 1 cut(s) 560
FaeI CATG 2 cut(s) 148, 412
FaiI YATR 3 cut(s) 146, 410, 632
FaqI GGGAC 3 cut(s) 149, 328, 406
FatI CATG 2 cut(s) 144, 408
GlaI GCGC 4 cut(s) 136, 244, 506, 537
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 246, 539
HaeIII GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
HapII CCGG 9 cut(s) 138, 233, 264, 307, 332, 351, 441, 454, 618
HhaI GCGC 4 cut(s) 137, 245, 507, 538
Hin1II CATG 2 cut(s) 148, 412
Hin6I GCGC 4 cut(s) 135, 243, 505, 536
HinP1I GCGC 4 cut(s) 135, 243, 505, 536
HincII GTYRAC 3 cut(s) 229, 238, 567
HindII GTYRAC 3 cut(s) 229, 238, 567
HpaII CCGG 9 cut(s) 138, 233, 264, 307, 332, 351, 441, 454, 618
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 4 cut(s) 229, 238, 459, 567
Hpy188I TCNGA 7 cut(s) 382, 422, 429, 495, 587, 640, 724
Hpy188III TCNNGA 4 cut(s) 259, 332, 368, 554
Hpy8I GTNNAC 4 cut(s) 229, 238, 459, 567
Hpy99I CGWCG 5 cut(s) 119, 374, 499, 502, 615
HpyAV CCTTC 2 cut(s) 160, 526
HpyCH4III ACNGT 4 cut(s) 109, 226, 301, 397
HpyCH4IV ACGT 2 cut(s) 58, 659
HpyCH4V TGCA 4 cut(s) 9, 39, 51, 541
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
HpyF3I CTNAG 2 cut(s) 93, 560
HpySE526I ACGT 2 cut(s) 58, 659
Hsp92II CATG 2 cut(s) 148, 412
HspAI GCGC 4 cut(s) 135, 243, 505, 536
Kpn2I TCCGGA 1 cut(s) 331
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 4 cut(s) 75, 424, 550, 719
LmnI GCTCC 3 cut(s) 334, 423, 685
Lsp1109I GCAGC 6 cut(s) 2, 23, 51, 240, 525, 553
LweI GCATC 1 cut(s) 60
MaeII ACGT 2 cut(s) 58, 659
MaeIII GTNAC 1 cut(s) 652
MalI GATC 4 cut(s) 77, 426, 552, 721
MboI GATC 4 cut(s) 75, 424, 550, 719
MboII GAAGA 4 cut(s) 103, 118, 441, 653
MflI RGATCY 3 cut(s) 424, 550, 719
MluCI AATT 1 cut(s) 436
MlyI GAGTC 8 cut(s) 53, 310, 358, 424, 533, 562, 653, 677
MmeI TCCRAC 2 cut(s) 452, 518
MnlI CCTC 9 cut(s) 152, 202, 305, 367, 376, 408, 457, 555, 701
MroI TCCGGA 1 cut(s) 331
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 751
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 9 cut(s) 138, 233, 264, 307, 332, 351, 441, 454, 618
MspR9I CCNGG 5 cut(s) 233, 265, 308, 454, 618
MvnI CGCG 5 cut(s) 135, 290, 469, 548, 683
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 5 cut(s) 233, 265, 308, 454, 618
NdeII GATC 4 cut(s) 75, 424, 550, 719
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 148, 412
NlaIV GGNNCC 4 cut(s) 349, 419, 445, 721
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 378
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 170, 328
Pfl23II CGTACG 1 cut(s) 221
PleI GAGTC 8 cut(s) 52, 310, 358, 424, 532, 562, 652, 676
PpsI GAGTC 8 cut(s) 52, 310, 358, 424, 532, 562, 652, 676
PscI ACATGT 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 174
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 4 cut(s) 349, 419, 445, 721
PspPI GGNCC 3 cut(s) 97, 261, 556
PstI CTGCAG 2 cut(s) 41, 543
PsuI RGATCY 3 cut(s) 424, 550, 719
RsaI GTAC 4 cut(s) 223, 403, 692, 714
RsaNI GTAC 4 cut(s) 222, 402, 691, 713
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 751
Sau3AI GATC 4 cut(s) 75, 424, 550, 719
Sau96I GGNCC 3 cut(s) 97, 261, 556
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 8 cut(s) 53, 310, 358, 424, 533, 562, 653, 677
ScrFI CCNGG 5 cut(s) 233, 265, 308, 454, 618
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 2 cut(s) 37, 539
SfiI GGCCNNNNNGGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 2 cut(s) 261, 556
Sse9I AATT 1 cut(s) 436
SsiI CCGC 9 cut(s) 28, 133, 159, 216, 288, 290, 322, 548, 683
StyD4I CCNGG 5 cut(s) 231, 263, 306, 452, 616
TaaI ACNGT 4 cut(s) 109, 226, 301, 397
TaiI ACGT 2 cut(s) 61, 662
TaqI TCGA 3 cut(s) 78, 207, 666
TasI AATT 1 cut(s) 436
TatI WGTACW 2 cut(s) 401, 712
TauI GCSGC 4 cut(s) 135, 219, 290, 325
TfiI GAWTC 2 cut(s) 170, 328
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TscAI CASTG 1 cut(s) 77
TseI GCWGC 7 cut(s) 6, 15, 36, 39, 253, 538, 541
TspDTI ATGAA 2 cut(s) 142, 647
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 261, 556
XceI RCATGY 1 cut(s) 412
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.