Rroxscaffold_3G00244370

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012765
Physical Location & Seq
Forward (+)
37036830 .. 37037251
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244370.1

Sequence Viewer

Length: 327 bp
ATGCATATCCCGTACTGCTACCGGAAACCTAATCTCACAACGACGGAAGCTGTGAGAAGAAGAAATAGCTGGCCGACTTTGAAGTCTCTGAAGACCTTCTCCACCGTCCGGGATCTTCTTCTCCACCGCTCTAAGGCAGCTTCTTGTTCTCTGACGAAGAAGCGCAAGAGACCGGAGGATGAATCGTTGAAGGTGCTGCAGCACGCGGATCTGGATCAGATTCACTCTCTCTCTCTCTCTCTCTCTCTCTCAATTCCAGATCCTCTCCGAGATTTCACTCCAAAGTACGAAGGTGAATGGGAGATGTGGGTTTTGAGTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

108

Amino Acids

12.64

Weight (kDa)

9.69

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 127, 206
AclWI GGATC 4 cut(s) 120, 216, 222, 254
AcoI YGGCCR 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 2 cut(s) 14, 287
AfiI CCNNNNNNNGG 2 cut(s) 108, 133
AgsI TTSAA 3 cut(s) 82, 190, 322
AluBI AGCT 3 cut(s) 50, 69, 140
AluI AGCT 3 cut(s) 50, 69, 140
Alw26I GTCTC 2 cut(s) 90, 163
AlwI GGATC 4 cut(s) 120, 216, 222, 254
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 137, 196, 199
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 149, 183, 211
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 90, 163
BfmI CTRYAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 138, 197, 200
BlsI GCNGC 3 cut(s) 139, 198, 201
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 21, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 133
Bse8I GATNNNNATC 1 cut(s) 213
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 108, 133
BseXI GCAGC 3 cut(s) 149, 183, 211
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 3 cut(s) 22, 109, 173
BslI CCNNNNNNNGG 2 cut(s) 108, 133
BsmAI GTCTC 2 cut(s) 90, 163
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 112, 208, 214, 259
BspACI CCGC 2 cut(s) 127, 206
BspANI GGCC 1 cut(s) 73
BspFNI CGCG 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 4 cut(s) 120, 216, 222, 254
BspTNI GGTCTC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 129
BssMI GATC 4 cut(s) 112, 208, 214, 259
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 71, 204
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 115, 211, 217, 262
BstMAI GTCTC 2 cut(s) 90, 163
BstMBI GATC 4 cut(s) 112, 208, 214, 259
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 149, 183, 211
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 3 cut(s) 112, 208, 259
BstYI RGATCY 3 cut(s) 112, 208, 259
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 71, 204
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 13, 286
CviJI RGCY 4 cut(s) 50, 69, 73, 140
CviKI_1 RGCY 4 cut(s) 50, 69, 73, 140
CviQI GTAC 2 cut(s) 13, 286
DdeI CTNAG 1 cut(s) 132
DpnI GATC 4 cut(s) 114, 210, 216, 261
DpnII GATC 4 cut(s) 112, 208, 214, 259
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 138, 197, 200
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 138, 197, 200
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 138, 197, 200
HaeIII GGCC 1 cut(s) 73
HapII CCGG 3 cut(s) 22, 109, 173
HhaI GCGC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 182, 220
HpaII CCGG 3 cut(s) 22, 109, 173
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 90, 153, 219, 269
Hpy188III TCNNGA 2 cut(s) 212, 257
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 106, 184, 284
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 4, 199
HpyF3I CTNAG 1 cut(s) 132
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 4 cut(s) 112, 208, 214, 259
LpnPI CCDG 6 cut(s) 35, 55, 122, 186, 197, 270
Lsp1109I GCAGC 3 cut(s) 149, 183, 211
MalI GATC 4 cut(s) 114, 210, 216, 261
MbiI CCGCTC 1 cut(s) 129
MboI GATC 4 cut(s) 112, 208, 214, 259
MboII GAAGA 6 cut(s) 69, 72, 103, 107, 110, 169
MflI RGATCY 3 cut(s) 112, 208, 259
MluCI AATT 1 cut(s) 252
MnlI CCTC 2 cut(s) 169, 273
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 95
MspI CCGG 3 cut(s) 22, 109, 173
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 206
NciI CCSGG 1 cut(s) 110
NdeII GATC 4 cut(s) 112, 208, 214, 259
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 182, 220
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 3 cut(s) 139, 198, 201
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 3 cut(s) 112, 208, 259
RsaI GTAC 2 cut(s) 14, 287
RsaNI GTAC 2 cut(s) 13, 286
SatI GCNGC 3 cut(s) 138, 197, 200
Sau3AI GATC 4 cut(s) 112, 208, 214, 259
ScrFI CCNGG 1 cut(s) 110
SetI ASST 7 cut(s) 31, 52, 71, 98, 142, 195, 295
SfcI CTRYAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 252
SsiI CCGC 2 cut(s) 127, 206
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 252
TfiI GAWTC 2 cut(s) 182, 220
TseI GCWGC 3 cut(s) 137, 196, 199
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.