RLG00000017590

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012765
Physical Location & Seq
Reverse (-)
18760194 .. 18761030
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017590

Sequence Viewer

Length: 744 bp
ATGAGCTGCAACGGCTGCCGAGTTCTGCGCAAGGGCTGCAGCGAGTCCTGCATCTTACGTCCTTGTCTGCAGTGGATCGAAACGCCCGAAGCCCAGGGCCACGCTACTGTTTTCGTCGCCAAGTTCTTCGGCCGTGCCGGCCTCATGTCCTTCATCTCCGCCGTACCTGAGCCCCAGCGACCCGTTCTTTTTCAATCTCTGCTATTCGAGGCTTGTGGCCGTACGGTCAACCCGGTCAACGGCGCGGTGGGGCTGCTCTGGACCGGGAACTGGCAGGTGTGTCAGGCCGCGGTCGAGACGGTTCTCCGGGGCGGGACTCTGCGGCCGATTCCGGAGCTGGTTTCGGGTTCCGGGTCGGGTTTGACTCCGGACGAGGCATCCGAGGCTGACGGGACCGCCTGTACGGACATGTGGAGGCTCCGAGATCCGACTCACAATTCGGGTTCTTCTTCCCGGTTCACCAACTCGCGCTCCAAGGCAGCTTCTTGTTCTCCGACGACCAAGCGCAAGAGACCGGACGACGAGTCGTTGAAGGTGCTGCAGCACGCGGATCTGGACCTCCGGTTGACTCCCACCCTCGCTTTCAGACCGAAGCCCAAACCCGAGACCCGACGACTCGGCTCCCCGTCCATGAACTCCGAGGAGTCGGTGGTCACCACGTGCTTCGAGTCTACCGGGTTAGCGGAGCAGTACCCGAACCCAAACGGAGGATCCGAGATAAAGCTACTCAGCCTGTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

248

Amino Acids

26.73

Weight (kDa)

8.35

Isoelectric Point (pI)

61.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 3.9e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc16I TGCGCA 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 671
AccII CGCG 4 cut(s) 245, 290, 469, 548
AccIII TCCGGA 2 cut(s) 331, 367
AciI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 683
AclWI GGATC 5 cut(s) 83, 419, 558, 705, 718
AcoI YGGCCR 3 cut(s) 130, 217, 323
AcvI CACGTG 1 cut(s) 660
AdeI CACNNNGTG 1 cut(s) 660
AfaI GTAC 4 cut(s) 165, 223, 403, 692
AfiI CCNNNNNNNGG 3 cut(s) 239, 270, 707
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 194, 532
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 4 cut(s) 6, 337, 482, 724
AluI AGCT 4 cut(s) 6, 337, 482, 724
Alw26I GTCTC 3 cut(s) 290, 505, 599
AlwI GGATC 5 cut(s) 83, 419, 558, 705, 718
Ama87I CYCGRG 1 cut(s) 602
Aor13HI TCCGGA 2 cut(s) 331, 367
AoxI GGCC 6 cut(s) 97, 130, 139, 217, 285, 323
ApeKI GCWGC 8 cut(s) 6, 15, 36, 39, 253, 479, 538, 541
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 4 cut(s) 30, 245, 471, 507
AspS9I GGNCC 4 cut(s) 97, 261, 393, 556
AsuC2I CCSGG 6 cut(s) 233, 265, 308, 352, 454, 676
AsuHPI GGTGA 2 cut(s) 451, 646
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 3 cut(s) 261, 393, 556
BamHI GGATCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 660
BbvI GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BceAI ACGGC 5 cut(s) 28, 117, 146, 204, 256
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 6 cut(s) 233, 265, 308, 352, 454, 676
BcoDI GTCTC 3 cut(s) 290, 505, 599
BfmI CTRYAG 3 cut(s) 37, 68, 539
BfuAI ACCTGC 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 138
Bme1390I CCNGG 7 cut(s) 95, 233, 265, 308, 352, 454, 676
Bme18I GGWCC 3 cut(s) 261, 393, 556
BmeRI GACNNNNNGTC 1 cut(s) 523
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 4 cut(s) 97, 261, 393, 556
BmiI GGNNCC 5 cut(s) 349, 394, 419, 622, 712
BmrFI CCNGG 7 cut(s) 95, 233, 265, 308, 352, 454, 676
BmsI GCATC 2 cut(s) 60, 386
Bpu10I CCTNAGC 1 cut(s) 168
BpuMI CCSGG 6 cut(s) 233, 265, 308, 352, 454, 676
BsaAI YACGTR 1 cut(s) 660
BsaI GGTCTC 2 cut(s) 505, 599
BsaJI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 639
BsaWI WCCGGW 4 cut(s) 331, 367, 514, 561
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 270, 707
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 275
BseAI TCCGGA 2 cut(s) 331, 367
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 639
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 239, 270, 707
BseMII CTCAG 2 cut(s) 159, 742
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 656
BseX3I CGGCCG 2 cut(s) 130, 323
BseXI GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BseYI CCCAGC 1 cut(s) 174
Bsh1236I CGCG 4 cut(s) 245, 290, 469, 548
Bsh1285I CGRYCG 3 cut(s) 133, 294, 326
BshFI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BsiEI CGRYCG 3 cut(s) 133, 294, 326
BsiHKCI CYCGRG 1 cut(s) 602
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 328, 406
BslI CCNNNNNNNGG 3 cut(s) 239, 270, 707
BsmAI GTCTC 3 cut(s) 290, 505, 599
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 328, 406
BsnI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
Bso31I GGTCTC 2 cut(s) 505, 599
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 2 cut(s) 331, 367
Bsp143I GATC 4 cut(s) 75, 424, 550, 710
BspACI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 683
BspANI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BspCNI CTCAG 2 cut(s) 160, 741
BspEI TCCGGA 2 cut(s) 331, 367
BspFNI CGCG 4 cut(s) 245, 290, 469, 548
BspLI GGNNCC 5 cut(s) 349, 394, 419, 622, 712
BspMAI CTGCAG 3 cut(s) 41, 72, 543
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 5 cut(s) 83, 419, 558, 705, 718
BspTNI GGTCTC 2 cut(s) 505, 599
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 639
BssMI GATC 4 cut(s) 75, 424, 550, 710
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 109, 226, 301
BstAPI GCANNNNNTGC 2 cut(s) 15, 36
BstBAI YACGTR 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 139, 546
BstDEI CTNAG 2 cut(s) 168, 728
BstDSI CCRYGG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 4 cut(s) 245, 290, 469, 548
BstHHI GCGC 4 cut(s) 30, 245, 471, 507
BstKTI GATC 4 cut(s) 78, 427, 553, 713
BstMAI GTCTC 3 cut(s) 290, 505, 599
BstMBI GATC 4 cut(s) 75, 424, 550, 710
BstMCI CGRYCG 3 cut(s) 133, 294, 326
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 652
BstSCI CCNGG 7 cut(s) 93, 231, 263, 306, 350, 452, 674
BstSFI CTRYAG 3 cut(s) 37, 68, 539
BstUI CGCG 4 cut(s) 245, 290, 469, 548
BstV1I GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BstX2I RGATCY 3 cut(s) 424, 550, 710
BstYI RGATCY 3 cut(s) 424, 550, 710
BstZI CGGCCG 2 cut(s) 130, 323
BsuRI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 377
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 139, 546
CfoI GCGC 4 cut(s) 30, 245, 471, 507
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 97, 261, 393, 556
Cfr42I CCGCGG 1 cut(s) 291
Csp6I GTAC 4 cut(s) 164, 222, 402, 691
CviAII CATG 3 cut(s) 145, 409, 631
CviQI GTAC 4 cut(s) 164, 222, 402, 691
DdeI CTNAG 2 cut(s) 168, 728
DpnI GATC 4 cut(s) 77, 426, 552, 712
DpnII GATC 4 cut(s) 75, 424, 550, 710
DraIII CACNNNGTG 1 cut(s) 660
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 3 cut(s) 130, 217, 323
EagI CGGCCG 2 cut(s) 130, 323
Eam1105I GACNNNNNGTC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 130, 323
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 2 cut(s) 505, 599
Eco47I GGWCC 3 cut(s) 261, 393, 556
Eco52I CGGCCG 2 cut(s) 130, 323
Eco72I CACGTG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 148, 412, 634
FaiI YATR 3 cut(s) 146, 410, 632
FaqI GGGAC 2 cut(s) 328, 406
FatI CATG 3 cut(s) 144, 408, 630
FauI CCCGC 1 cut(s) 305
FblI GTMKAC 1 cut(s) 671
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 174
FspI TGCGCA 1 cut(s) 29
GlaI GCGC 4 cut(s) 29, 244, 470, 506
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
HhaI GCGC 4 cut(s) 30, 245, 471, 507
Hin1II CATG 3 cut(s) 148, 412, 634
Hin6I GCGC 4 cut(s) 28, 243, 469, 505
HinP1I GCGC 4 cut(s) 28, 243, 469, 505
HincII GTYRAC 3 cut(s) 229, 238, 567
HindII GTYRAC 3 cut(s) 229, 238, 567
HphI GGTGA 2 cut(s) 451, 646
Hpy166II GTNNAC 5 cut(s) 229, 238, 459, 567, 672
Hpy188I TCNGA 7 cut(s) 382, 422, 429, 495, 587, 640, 715
Hpy188III TCNNGA 5 cut(s) 259, 295, 332, 368, 554
Hpy8I GTNNAC 5 cut(s) 229, 238, 459, 567, 672
Hpy99I CGWCG 4 cut(s) 119, 499, 524, 615
HpyAV CCTTC 2 cut(s) 160, 526
HpyCH4III ACNGT 3 cut(s) 109, 226, 301
HpyCH4IV ACGT 2 cut(s) 58, 659
HpyCH4V TGCA 5 cut(s) 9, 39, 51, 70, 541
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
HpyF3I CTNAG 2 cut(s) 168, 728
HpySE526I ACGT 2 cut(s) 58, 659
Hsp92II CATG 3 cut(s) 148, 412, 634
HspAI GCGC 4 cut(s) 28, 243, 469, 505
Kpn2I TCCGGA 2 cut(s) 331, 367
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 4 cut(s) 75, 424, 550, 710
LmnI GCTCC 5 cut(s) 334, 423, 476, 626, 685
Lsp1109I GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
LweI GCATC 2 cut(s) 60, 386
MaeII ACGT 2 cut(s) 58, 659
MaeIII GTNAC 1 cut(s) 652
MalI GATC 4 cut(s) 77, 426, 552, 712
MboI GATC 4 cut(s) 75, 424, 550, 710
MboII GAAGA 3 cut(s) 118, 438, 441
MflI RGATCY 3 cut(s) 424, 550, 710
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 436
MlyI GAGTC 9 cut(s) 53, 310, 358, 424, 533, 562, 609, 653, 677
MmeI TCCRAC 2 cut(s) 452, 518
MnlI CCTC 9 cut(s) 152, 202, 367, 376, 408, 569, 587, 634, 701
MroI TCCGGA 2 cut(s) 331, 367
MroNI GCCGGC 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 7 cut(s) 95, 233, 265, 308, 352, 454, 676
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 4 cut(s) 245, 290, 469, 548
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 36, 48, 138, 383
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 6 cut(s) 233, 265, 308, 352, 454, 676
NdeII GATC 4 cut(s) 75, 424, 550, 710
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 148, 412, 634
NlaIV GGNNCC 5 cut(s) 349, 394, 419, 622, 712
NmeAIII GCCGAG 2 cut(s) 44, 597
NmuCI GTSAC 1 cut(s) 652
NsbI TGCGCA 1 cut(s) 29
NspI RCATGY 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 94
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 378, 711
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 328
Pfl23II CGTACG 1 cut(s) 221
PleI GAGTC 9 cut(s) 52, 310, 358, 424, 532, 562, 609, 652, 676
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 9 cut(s) 52, 310, 358, 424, 532, 562, 609, 652, 676
Ppu21I YACGTR 1 cut(s) 660
PscI ACATGT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 660
PspEI GGTNACC 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 93
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 5 cut(s) 349, 394, 419, 622, 712
PspPI GGNCC 4 cut(s) 97, 261, 393, 556
PstI CTGCAG 3 cut(s) 41, 72, 543
PsuI RGATCY 3 cut(s) 424, 550, 710
RsaI GTAC 4 cut(s) 165, 223, 403, 692
RsaNI GTAC 4 cut(s) 164, 222, 402, 691
SacII CCGCGG 1 cut(s) 291
Sau3AI GATC 4 cut(s) 75, 424, 550, 710
Sau96I GGNCC 4 cut(s) 97, 261, 393, 556
SchI GAGTC 9 cut(s) 53, 310, 358, 424, 533, 562, 609, 653, 677
ScrFI CCNGG 7 cut(s) 95, 233, 265, 308, 352, 454, 676
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 2 cut(s) 60, 386
SfcI CTRYAG 3 cut(s) 37, 68, 539
SfiI GGCCNNNNNGGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 3 cut(s) 261, 393, 556
Sse9I AATT 1 cut(s) 436
SsiI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 683
StyD4I CCNGG 7 cut(s) 93, 231, 263, 306, 350, 452, 674
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 109, 226, 301
TaiI ACGT 2 cut(s) 61, 662
TaqI TCGA 4 cut(s) 78, 207, 294, 666
TaqII GACCGA 1 cut(s) 604
TasI AATT 1 cut(s) 436
TauI GCSGC 2 cut(s) 290, 325
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 8 cut(s) 6, 15, 36, 39, 253, 479, 538, 541
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 142, 647
TspGWI ACGGA 2 cut(s) 419, 720
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 3 cut(s) 261, 393, 556
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.