Prupe.6G223100_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012765
Physical Location & Seq
Forward (+)
22810918 .. 22812912
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G223100.1

Sequence Viewer

Length: 747 bp
ATGCCGAGTTCTCCGAAAGGGCTGCAGCGAATCCTGCATGCTCCGCCCTTGCCTCCAGTGGATCGAAACCCCCGAAGCCCAAGCCACGCCACCGTCTTCGTAGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGATTCTCAGCGTCCCGTTTTGTTCCAGTCTCTGTTGTTTGAAGCCTGCGGCCGTACGGTCAACCCGGTCAACGGCGCCGTGGGGCTGCTCTGGACCGGCAACTGGCACGTGTGCCAGGCCGCGGTCGAGACCGTGCTCCGCGGCGGCACGCTTCGGCCGATACCAGAGCTCCTCGGCGGCGGCTCGACTTCCGACGAAGCCTCCGACGCCGATGGAGGCGGCGTCAACAACTGTACGGACATGTGGAGGCTCCGAGATCCGAGCCACAACTCCGGTTCTTCGTCCCGGTTCACCAGCTCCCGGTCCGCCAGGGTTTCCTCTCCGAAACGCAAGCGATCCGCCGACGAGGAGTCGTCCACGAAGGTGCTTCAGCTCCAGCACCATGCGGATCTGGATCTGCGGTTGACTCCGAGCCCGACTTTCAAAGCGAAGCCCAAACCCGAGACCCGACGAGCCGGAACGCCGTCGATGAACTCCGAGGAGTCGGTGGTCACCACGTGCTTCGAGAGCGGCTTGCCAGATAATCATCATCAGTATAACCAGCACTCTTATGGAGTGGGAGCAGAGAGAAAGCTACTCAACTTATTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

249

Amino Acids

26.88

Weight (kDa)

9.38

Isoelectric Point (pI)

66.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 663
AccII CGCG 3 cut(s) 120, 275, 294
AclWI GGATC 5 cut(s) 69, 404, 483, 549, 555
AcoI YGGCCR 3 cut(s) 115, 202, 308
AcuI CTGAAG 1 cut(s) 506
AcvI CACGTG 2 cut(s) 262, 651
AcyI GRCGYC 3 cut(s) 228, 360, 375
AdeI CACNNNGTG 1 cut(s) 651
AfaI GTAC 2 cut(s) 208, 388
AfiI CCNNNNNNNGG 4 cut(s) 224, 255, 274, 453
AflIII ACRYGT 2 cut(s) 261, 393
AgsI TTSAA 2 cut(s) 194, 577
AhdI GACNNNNNGTC 1 cut(s) 502
AjnI CCWGG 2 cut(s) 267, 461
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 4 cut(s) 322, 450, 526, 727
AluI AGCT 4 cut(s) 322, 450, 526, 727
Alw21I GWGCWC 2 cut(s) 291, 324
Alw26I GTCTC 3 cut(s) 186, 275, 590
AlwI GGATC 5 cut(s) 69, 404, 483, 549, 555
AlwNI CAGNNNCTG 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 5 cut(s) 115, 124, 202, 270, 308
ApeKI GCWGC 3 cut(s) 22, 25, 238
AspLEI GCGC 2 cut(s) 122, 230
AspS9I GGNCC 2 cut(s) 246, 456
AsuC2I CCSGG 3 cut(s) 218, 439, 454
AsuHPI GGTGA 2 cut(s) 436, 637
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 2 cut(s) 246, 456
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 2 cut(s) 324, 569
BbrPI CACGTG 2 cut(s) 262, 651
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 291, 324
BbvI GCAGC 3 cut(s) 9, 37, 225
BccI CCATC 1 cut(s) 359
BceAI ACGGC 5 cut(s) 131, 189, 215, 241, 601
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 2 cut(s) 269, 463
BcnI CCSGG 3 cut(s) 218, 439, 454
BcoDI GTCTC 3 cut(s) 186, 275, 590
BfmI CTRYAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 123
Bme1390I CCNGG 5 cut(s) 218, 269, 439, 454, 463
Bme18I GGWCC 2 cut(s) 246, 456
BmeRI GACNNNNNGTC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 246, 456
BmiI GGNNCC 2 cut(s) 229, 404
BmrFI CCNGG 5 cut(s) 218, 269, 439, 454, 463
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 39, 512
BpuMI CCSGG 3 cut(s) 218, 439, 454
BsaAI YACGTR 2 cut(s) 262, 651
BsaBI GATNNNNATC 2 cut(s) 546, 678
BsaHI GRCGYC 3 cut(s) 228, 360, 375
BsaI GGTCTC 2 cut(s) 275, 590
BsaJI CCNNGG 6 cut(s) 231, 273, 292, 325, 462, 630
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 6 cut(s) 306, 336, 338, 360, 368, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 255, 274, 453
Bse118I RCCGGY 2 cut(s) 122, 248
Bse1I ACTGG 3 cut(s) 56, 178, 260
Bse8I GATNNNNATC 2 cut(s) 546, 678
BseBI CCWGG 2 cut(s) 269, 463
BseDI CCNNGG 6 cut(s) 231, 273, 292, 325, 462, 630
BseJI GATNNNNATC 2 cut(s) 546, 678
BseLI CCNNNNNNNGG 4 cut(s) 224, 255, 274, 453
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 3 cut(s) 56, 178, 260
BseRI GAGGAG 3 cut(s) 314, 515, 647
BseX3I CGGCCG 3 cut(s) 115, 202, 308
BseXI GCAGC 3 cut(s) 9, 37, 225
Bsh1236I CGCG 3 cut(s) 120, 275, 294
Bsh1285I CGRYCG 4 cut(s) 118, 205, 279, 311
BshFI GGCC 5 cut(s) 117, 126, 204, 272, 310
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 4 cut(s) 118, 205, 279, 311
BsiHKAI GWGCWC 2 cut(s) 291, 324
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 7 cut(s) 123, 218, 249, 426, 439, 454, 609
BsiWI CGTACG 1 cut(s) 206
BslFI GGGAC 3 cut(s) 134, 150, 421
BslI CCNNNNNNNGG 4 cut(s) 224, 255, 274, 453
BsmAI GTCTC 3 cut(s) 186, 275, 590
BsmFI GGGAC 3 cut(s) 134, 150, 421
BsnI GGCC 5 cut(s) 117, 126, 204, 272, 310
Bso31I GGTCTC 2 cut(s) 275, 590
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 291, 324, 569
Bsp143I GATC 5 cut(s) 61, 409, 488, 541, 547
BspANI GGCC 5 cut(s) 117, 126, 204, 272, 310
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 3 cut(s) 120, 275, 294
BspLI GGNNCC 2 cut(s) 229, 404
BspMAI CTGCAG 1 cut(s) 27
BspPI GGATC 5 cut(s) 69, 404, 483, 549, 555
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 275, 590
BsrBI CCGCTC 1 cut(s) 663
BsrFI RCCGGY 2 cut(s) 122, 248
BsrI ACTGG 3 cut(s) 56, 178, 260
BssAI RCCGGY 2 cut(s) 122, 248
BssECI CCNNGG 6 cut(s) 231, 273, 292, 325, 462, 630
BssMI GATC 5 cut(s) 61, 409, 488, 541, 547
BssNI GRCGYC 3 cut(s) 228, 360, 375
Bst2UI CCWGG 2 cut(s) 269, 463
Bst4CI ACNGT 4 cut(s) 94, 211, 286, 386
BstACI GRCGYC 3 cut(s) 228, 360, 375
BstBAI YACGTR 2 cut(s) 262, 651
BstC8I GCNNGC 6 cut(s) 39, 124, 199, 302, 485, 668
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 3 cut(s) 231, 273, 292
BstEII GGTNACC 1 cut(s) 643
BstFNI CGCG 3 cut(s) 120, 275, 294
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 122, 230
BstKTI GATC 5 cut(s) 64, 412, 491, 544, 550
BstMAI GTCTC 3 cut(s) 186, 275, 590
BstMBI GATC 5 cut(s) 61, 409, 488, 541, 547
BstMCI CGRYCG 4 cut(s) 118, 205, 279, 311
BstMWI GCNNNNNNNGC 5 cut(s) 34, 43, 123, 359, 660
BstNI CCWGG 2 cut(s) 269, 463
BstNSI RCATGY 2 cut(s) 41, 397
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 5 cut(s) 216, 267, 437, 452, 461
BstSFI CTRYAG 1 cut(s) 23
BstUI CGCG 3 cut(s) 120, 275, 294
BstV1I GCAGC 3 cut(s) 9, 37, 225
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 3 cut(s) 409, 541, 547
BstYI RGATCY 3 cut(s) 409, 541, 547
BstZI CGGCCG 3 cut(s) 115, 202, 308
BsuRI GGCC 5 cut(s) 117, 126, 204, 272, 310
BtgI CCRYGG 3 cut(s) 231, 273, 292
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 6 cut(s) 39, 124, 199, 302, 485, 668
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 2 cut(s) 122, 230
Cfr10I RCCGGY 2 cut(s) 122, 248
Cfr13I GGNCC 2 cut(s) 246, 456
Cfr42I CCGCGG 2 cut(s) 276, 295
CpoI CGGWCCG 1 cut(s) 456
CseI GACGC 3 cut(s) 152, 364, 368
Csp6I GTAC 2 cut(s) 207, 387
CspI CGGWCCG 1 cut(s) 456
CviAII CATG 4 cut(s) 38, 130, 394, 536
CviQI GTAC 2 cut(s) 207, 387
DdeI CTNAG 1 cut(s) 159
DinI GGCGCC 1 cut(s) 229
DpnI GATC 5 cut(s) 63, 411, 490, 543, 549
DpnII GATC 5 cut(s) 61, 409, 488, 541, 547
DraIII CACNNNGTG 1 cut(s) 651
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 3 cut(s) 115, 202, 308
EagI CGGCCG 3 cut(s) 115, 202, 308
Eam1105I GACNNNNNGTC 1 cut(s) 502
EciI GGCGGA 4 cut(s) 33, 133, 448, 481
Ecl136II GAGCTC 1 cut(s) 322
EclXI CGGCCG 3 cut(s) 115, 202, 308
Eco24I GRGCYC 2 cut(s) 324, 569
Eco31I GGTCTC 2 cut(s) 275, 590
Eco47I GGWCC 2 cut(s) 246, 456
Eco52I CGGCCG 3 cut(s) 115, 202, 308
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 506
Eco72I CACGTG 2 cut(s) 262, 651
Eco88I CYCGRG 1 cut(s) 593
Eco91I GGTNACC 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 267, 461
EcoT38I GRGCYC 2 cut(s) 324, 569
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
FaeI CATG 4 cut(s) 41, 133, 397, 539
FaiI YATR 6 cut(s) 39, 131, 395, 537, 690, 705
FaqI GGGAC 3 cut(s) 134, 150, 421
FatI CATG 4 cut(s) 37, 129, 393, 535
FriOI GRGCYC 2 cut(s) 324, 569
GlaI GCGC 2 cut(s) 121, 229
GsuI CTGGAG 2 cut(s) 39, 512
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 5 cut(s) 117, 126, 204, 272, 310
HapII CCGG 7 cut(s) 123, 218, 249, 426, 439, 454, 609
HgaI GACGC 3 cut(s) 152, 364, 368
HhaI GCGC 2 cut(s) 122, 230
Hin1I GRCGYC 3 cut(s) 228, 360, 375
Hin1II CATG 4 cut(s) 41, 133, 397, 539
Hin6I GCGC 2 cut(s) 120, 228
HinP1I GCGC 2 cut(s) 120, 228
HincII GTYRAC 4 cut(s) 214, 223, 379, 558
HindII GTYRAC 4 cut(s) 214, 223, 379, 558
HinfI GANTC 5 cut(s) 30, 155, 503, 559, 635
HpaII CCGG 7 cut(s) 123, 218, 249, 426, 439, 454, 609
HphI GGTGA 2 cut(s) 436, 637
Hpy166II GTNNAC 6 cut(s) 214, 223, 379, 444, 510, 558
Hpy188I TCNGA 8 cut(s) 15, 346, 358, 407, 414, 477, 564, 631
Hpy188III TCNNGA 4 cut(s) 244, 280, 545, 658
Hpy8I GTNNAC 6 cut(s) 214, 223, 379, 444, 510, 558
Hpy99I CGWCG 5 cut(s) 350, 362, 500, 606, 622
HpyAV CCTTC 2 cut(s) 145, 508
HpyCH4III ACNGT 4 cut(s) 94, 211, 286, 386
HpyCH4IV ACGT 2 cut(s) 261, 650
HpyCH4V TGCA 2 cut(s) 25, 37
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 43, 123, 359, 660
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 261, 650
Hsp92I GRCGYC 3 cut(s) 228, 360, 375
Hsp92II CATG 4 cut(s) 41, 133, 397, 539
HspAI GCGC 2 cut(s) 120, 228
KasI GGCGCC 1 cut(s) 227
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
KspI CCGCGG 2 cut(s) 276, 295
Kzo9I GATC 5 cut(s) 61, 409, 488, 541, 547
LmnI GCTCC 7 cut(s) 46, 294, 327, 408, 455, 531, 713
Lsp1109I GCAGC 3 cut(s) 9, 37, 225
MaeII ACGT 2 cut(s) 261, 650
MaeIII GTNAC 1 cut(s) 643
MalI GATC 5 cut(s) 63, 411, 490, 543, 549
MbiI CCGCTC 1 cut(s) 663
MboI GATC 5 cut(s) 61, 409, 488, 541, 547
MboII GAAGA 3 cut(s) 88, 103, 423
MflI RGATCY 3 cut(s) 409, 541, 547
MhlI GDGCHC 3 cut(s) 291, 324, 569
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 3 cut(s) 512, 553, 644
MmeI TCCRAC 2 cut(s) 369, 381
MnlI CCTC 9 cut(s) 63, 137, 335, 362, 364, 393, 481, 493, 625
MroNI GCCGGC 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 515, 702
MspA1I CMGCKG 2 cut(s) 275, 294
MspI CCGG 7 cut(s) 123, 218, 249, 426, 439, 454, 609
MspR9I CCNGG 5 cut(s) 218, 269, 439, 454, 463
MvaI CCWGG 2 cut(s) 269, 463
MvnI CGCG 3 cut(s) 120, 275, 294
MwoI GCNNNNNNNGC 5 cut(s) 34, 43, 123, 359, 660
NaeI GCCGGC 1 cut(s) 124
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 3 cut(s) 218, 439, 454
NdeII GATC 5 cut(s) 61, 409, 488, 541, 547
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 4 cut(s) 41, 133, 397, 539
NlaIV GGNNCC 2 cut(s) 229, 404
NmeAIII GCCGAG 2 cut(s) 30, 306
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 2 cut(s) 41, 397
OliI CACNNNNGTG 1 cut(s) 515
PaeI GCATGC 1 cut(s) 41
PciI ACATGT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 3 cut(s) 70, 308, 354
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 30, 155
Pfl23II CGTACG 1 cut(s) 206
PleI GAGTC 3 cut(s) 511, 553, 643
PluTI GGCGCC 1 cut(s) 231
PmaCI CACGTG 2 cut(s) 262, 651
PmlI CACGTG 2 cut(s) 262, 651
PpsI GAGTC 3 cut(s) 511, 553, 643
Ppu21I YACGTR 2 cut(s) 262, 651
PscI ACATGT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 267, 461
PspCI CACGTG 2 cut(s) 262, 651
PspEI GGTNACC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 267, 461
PspLI CGTACG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 229, 404
PspPI GGNCC 2 cut(s) 246, 456
PstI CTGCAG 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 3 cut(s) 409, 541, 547
RsaI GTAC 2 cut(s) 208, 388
RsaNI GTAC 2 cut(s) 207, 387
RseI CAYNNNNRTG 2 cut(s) 515, 702
Rsr2I CGGWCCG 1 cut(s) 456
RsrII CGGWCCG 1 cut(s) 456
SacI GAGCTC 1 cut(s) 324
SacII CCGCGG 2 cut(s) 276, 295
Sau3AI GATC 5 cut(s) 61, 409, 488, 541, 547
Sau96I GGNCC 2 cut(s) 246, 456
SchI GAGTC 3 cut(s) 512, 553, 644
ScrFI CCNGG 5 cut(s) 218, 269, 439, 454, 463
SduI GDGCHC 3 cut(s) 291, 324, 569
SetI ASST 7 cut(s) 264, 324, 452, 519, 528, 653, 729
SfcI CTRYAG 1 cut(s) 23
SfiI GGCCNNNNNGGCC 1 cut(s) 123
SfoI GGCGCC 1 cut(s) 229
Sfr303I CCGCGG 2 cut(s) 276, 295
SgrBI CCGCGG 2 cut(s) 276, 295
SinI GGWCC 2 cut(s) 246, 456
SmiMI CAYNNNNRTG 2 cut(s) 515, 702
SphI GCATGC 1 cut(s) 41
SspDI GGCGCC 1 cut(s) 227
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 5 cut(s) 216, 267, 437, 452, 461
TaaI ACNGT 4 cut(s) 94, 211, 286, 386
TaiI ACGT 2 cut(s) 264, 653
TaqI TCGA 5 cut(s) 64, 279, 338, 620, 657
TauI GCSGC 9 cut(s) 120, 204, 275, 297, 300, 333, 336, 375, 666
TfiI GAWTC 2 cut(s) 30, 155
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 3 cut(s) 22, 25, 238
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 2 cut(s) 127, 638
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 246, 456
XceI RCATGY 2 cut(s) 41, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.