Rh2CG200000

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012765
Physical Location & Seq
Reverse (-)
19156341 .. 19159655
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG200000.1

Sequence Viewer

Length: 747 bp
ATGAGCTGCAACGGCTGCCGAGTTCTGCGCAAGGGCTGCAGCGAGTCCTGCATCTTACGTCCTTGTCTGCAGTGGATCGAAACGCCCGAAGCCCAGGGCCACGCTACTGTTTTCGTCGCCAAGTTCTTCGGCCGTGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAACCCCAGCGACCCGTTCTGTTTCAATCCCTGCTATTCGAGGCTTGTGGCCGTACGGTCAACCCGGTCAACGGCGCGGTTGGGCTGCTCTGGACCGGGAACTGGCAGGTGTGTCAGGCCGCGGTCGAGACGGTTCTCCGGGGCGGGACTCTGCGGCCGATTCCGGAGCTGGTTTCGGGTTCCGGGTCGGGTTTGACTCCGGACGAGGCATCCGAGGCTGACGGGACCGCCTGTACGGACATGTGGAGGCTCCGAGATCCGACTCACAACTCGGGTTCTTCTTCCCGGTTCACCAACTCGCGCTCCAAGGCAGCTTCTTGTTCTCCGACGACCAAGCGCAAGAGACCGGACGACGAGTCGTTGAAGGTGCTGCAGCACGCGGATCTGGACCTCCGGTTGACTCCCACCCTCCTCGCTTTCAGACCGAAGCCCAAACCCGAGACCCGACGACCCGGCTCCCCGTCCATGAACTCCGAGGAGTCGGTGGTCACCACGTGCTTCGAGTCTGCCGGGTTCGCGGAGCAGTACCCGAACCCGAACGGAGGATCCGAGATAAAGCTACTCAGCCTGTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

248

Amino Acids

26.83

Weight (kDa)

8.35

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 4e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc16I TGCGCA 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 265
AccII CGCG 5 cut(s) 245, 290, 469, 548, 686
AccIII TCCGGA 2 cut(s) 331, 367
AciI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 686
AclWI GGATC 5 cut(s) 83, 419, 558, 708, 721
AcoI YGGCCR 3 cut(s) 130, 217, 323
AcvI CACGTG 1 cut(s) 663
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 3 cut(s) 223, 403, 695
AfiI CCNNNNNNNGG 3 cut(s) 239, 270, 710
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 194, 532
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 93
AloI GAACNNNNNNTCC 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 6, 337, 482, 727
AluI AGCT 4 cut(s) 6, 337, 482, 727
Alw26I GTCTC 3 cut(s) 290, 505, 602
AlwI GGATC 5 cut(s) 83, 419, 558, 708, 721
Ama87I CYCGRG 2 cut(s) 439, 605
Aor13HI TCCGGA 2 cut(s) 331, 367
AoxI GGCC 6 cut(s) 97, 130, 139, 217, 285, 323
ApeKI GCWGC 8 cut(s) 6, 15, 36, 39, 253, 479, 538, 541
AspLEI GCGC 4 cut(s) 30, 245, 471, 507
AspS9I GGNCC 4 cut(s) 97, 261, 393, 556
AsuC2I CCSGG 7 cut(s) 233, 265, 308, 352, 454, 621, 679
AsuHPI GGTGA 2 cut(s) 451, 649
AvaI CYCGRG 2 cut(s) 439, 605
AvaII GGWCC 3 cut(s) 261, 393, 556
BamHI GGATCC 1 cut(s) 713
BbrPI CACGTG 1 cut(s) 663
BbvI GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BceAI ACGGC 5 cut(s) 28, 117, 146, 204, 256
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 7 cut(s) 233, 265, 308, 352, 454, 621, 679
BcoDI GTCTC 3 cut(s) 290, 505, 602
BfmI CTRYAG 3 cut(s) 37, 68, 539
BfuAI ACCTGC 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 138
Bme1390I CCNGG 8 cut(s) 95, 233, 265, 308, 352, 454, 621, 679
Bme18I GGWCC 3 cut(s) 261, 393, 556
BmeRI GACNNNNNGTC 1 cut(s) 523
BmeT110I CYCGRG 2 cut(s) 439, 605
BmgT120I GGNCC 4 cut(s) 97, 261, 393, 556
BmiI GGNNCC 5 cut(s) 349, 394, 419, 625, 715
BmrFI CCNGG 8 cut(s) 95, 233, 265, 308, 352, 454, 621, 679
BmsI GCATC 2 cut(s) 60, 386
BpuMI CCSGG 7 cut(s) 233, 265, 308, 352, 454, 621, 679
BsaAI YACGTR 1 cut(s) 663
BsaI GGTCTC 2 cut(s) 505, 602
BsaJI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 642
BsaWI WCCGGW 4 cut(s) 331, 367, 514, 561
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 270, 710
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 275
BseAI TCCGGA 2 cut(s) 331, 367
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 642
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 239, 270, 710
BseMII CTCAG 1 cut(s) 745
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 569, 659
BseX3I CGGCCG 2 cut(s) 130, 323
BseXI GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BseYI CCCAGC 1 cut(s) 174
Bsh1236I CGCG 5 cut(s) 245, 290, 469, 548, 686
Bsh1285I CGRYCG 3 cut(s) 133, 294, 326
BshFI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BsiEI CGRYCG 3 cut(s) 133, 294, 326
BsiHKCI CYCGRG 2 cut(s) 439, 605
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 3 cut(s) 149, 328, 406
BslI CCNNNNNNNGG 3 cut(s) 239, 270, 710
BsmAI GTCTC 3 cut(s) 290, 505, 602
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 3 cut(s) 149, 328, 406
BsnI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
Bso31I GGTCTC 2 cut(s) 505, 602
BsoBI CYCGRG 2 cut(s) 439, 605
Bsp13I TCCGGA 2 cut(s) 331, 367
Bsp143I GATC 4 cut(s) 75, 424, 550, 713
BspACI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 686
BspANI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BspCNI CTCAG 1 cut(s) 744
BspEI TCCGGA 2 cut(s) 331, 367
BspFNI CGCG 5 cut(s) 245, 290, 469, 548, 686
BspLI GGNNCC 5 cut(s) 349, 394, 419, 625, 715
BspMAI CTGCAG 3 cut(s) 41, 72, 543
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 5 cut(s) 83, 419, 558, 708, 721
BspTNI GGTCTC 2 cut(s) 505, 602
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 7 cut(s) 93, 94, 288, 307, 381, 474, 642
BssMI GATC 4 cut(s) 75, 424, 550, 713
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 109, 226, 301
BstAPI GCANNNNNTGC 2 cut(s) 15, 36
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 139, 546
BstDEI CTNAG 1 cut(s) 731
BstDSI CCRYGG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 5 cut(s) 245, 290, 469, 548, 686
BstHHI GCGC 4 cut(s) 30, 245, 471, 507
BstKTI GATC 4 cut(s) 78, 427, 553, 716
BstMAI GTCTC 3 cut(s) 290, 505, 602
BstMBI GATC 4 cut(s) 75, 424, 550, 713
BstMCI CGRYCG 3 cut(s) 133, 294, 326
BstMWI GCNNNNNNNGC 7 cut(s) 12, 15, 36, 48, 138, 383, 683
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 8 cut(s) 93, 231, 263, 306, 350, 452, 619, 677
BstSFI CTRYAG 3 cut(s) 37, 68, 539
BstUI CGCG 5 cut(s) 245, 290, 469, 548, 686
BstV1I GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
BstX2I RGATCY 3 cut(s) 424, 550, 713
BstYI RGATCY 3 cut(s) 424, 550, 713
BstZI CGGCCG 2 cut(s) 130, 323
BsuRI GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 377
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 139, 546
CfoI GCGC 4 cut(s) 30, 245, 471, 507
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 97, 261, 393, 556
Cfr42I CCGCGG 1 cut(s) 291
Csp6I GTAC 3 cut(s) 222, 402, 694
CviAII CATG 3 cut(s) 145, 409, 634
CviQI GTAC 3 cut(s) 222, 402, 694
DdeI CTNAG 1 cut(s) 731
DpnI GATC 4 cut(s) 77, 426, 552, 715
DpnII GATC 4 cut(s) 75, 424, 550, 713
DraIII CACNNNGTG 1 cut(s) 663
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 3 cut(s) 130, 217, 323
EagI CGGCCG 2 cut(s) 130, 323
Eam1105I GACNNNNNGTC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 130, 323
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 2 cut(s) 505, 602
Eco47I GGWCC 3 cut(s) 261, 393, 556
Eco52I CGGCCG 2 cut(s) 130, 323
Eco72I CACGTG 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 439, 605
Eco91I GGTNACC 1 cut(s) 655
EcoO65I GGTNACC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 148, 412, 637
FaiI YATR 3 cut(s) 146, 410, 635
FaqI GGGAC 3 cut(s) 149, 328, 406
FatI CATG 3 cut(s) 144, 408, 633
FauI CCCGC 1 cut(s) 305
FokI GGATG 1 cut(s) 364
FspI TGCGCA 1 cut(s) 29
GlaI GCGC 4 cut(s) 29, 244, 470, 506
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 6 cut(s) 99, 132, 141, 219, 287, 325
HhaI GCGC 4 cut(s) 30, 245, 471, 507
Hin1II CATG 3 cut(s) 148, 412, 637
Hin6I GCGC 4 cut(s) 28, 243, 469, 505
HinP1I GCGC 4 cut(s) 28, 243, 469, 505
HincII GTYRAC 3 cut(s) 229, 238, 567
HindII GTYRAC 3 cut(s) 229, 238, 567
HinfI GANTC 9 cut(s) 44, 316, 328, 364, 430, 524, 568, 647, 671
HphI GGTGA 2 cut(s) 451, 649
Hpy166II GTNNAC 4 cut(s) 229, 238, 459, 567
Hpy188I TCNGA 7 cut(s) 382, 422, 429, 495, 590, 643, 718
Hpy188III TCNNGA 5 cut(s) 259, 295, 332, 368, 554
Hpy8I GTNNAC 4 cut(s) 229, 238, 459, 567
Hpy99I CGWCG 4 cut(s) 119, 499, 524, 618
HpyAV CCTTC 2 cut(s) 160, 526
HpyCH4III ACNGT 3 cut(s) 109, 226, 301
HpyCH4IV ACGT 2 cut(s) 58, 662
HpyCH4V TGCA 5 cut(s) 9, 39, 51, 70, 541
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 15, 36, 48, 138, 383, 683
HpyF3I CTNAG 1 cut(s) 731
HpySE526I ACGT 2 cut(s) 58, 662
Hsp92II CATG 3 cut(s) 148, 412, 637
HspAI GCGC 4 cut(s) 28, 243, 469, 505
Kpn2I TCCGGA 2 cut(s) 331, 367
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 4 cut(s) 75, 424, 550, 713
LmnI GCTCC 5 cut(s) 334, 423, 476, 629, 688
Lsp1109I GCAGC 7 cut(s) 2, 23, 51, 240, 491, 525, 553
LweI GCATC 2 cut(s) 60, 386
MaeII ACGT 2 cut(s) 58, 662
MaeIII GTNAC 1 cut(s) 655
MalI GATC 4 cut(s) 77, 426, 552, 715
MboI GATC 4 cut(s) 75, 424, 550, 713
MboII GAAGA 3 cut(s) 118, 438, 441
MflI RGATCY 3 cut(s) 424, 550, 713
MlyI GAGTC 8 cut(s) 53, 310, 358, 424, 533, 562, 656, 680
MmeI TCCRAC 2 cut(s) 452, 518
MroI TCCGGA 2 cut(s) 331, 367
MroNI GCCGGC 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 8 cut(s) 95, 233, 265, 308, 352, 454, 621, 679
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 5 cut(s) 245, 290, 469, 548, 686
MwoI GCNNNNNNNGC 7 cut(s) 12, 15, 36, 48, 138, 383, 683
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 7 cut(s) 233, 265, 308, 352, 454, 621, 679
NdeII GATC 4 cut(s) 75, 424, 550, 713
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 148, 412, 637
NlaIV GGNNCC 5 cut(s) 349, 394, 419, 625, 715
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 655
NsbI TGCGCA 1 cut(s) 29
NspI RCATGY 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 94
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 378, 714
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 328
Pfl23II CGTACG 1 cut(s) 221
PleI GAGTC 8 cut(s) 52, 310, 358, 424, 532, 562, 655, 679
PmaCI CACGTG 1 cut(s) 663
PmlI CACGTG 1 cut(s) 663
PpsI GAGTC 8 cut(s) 52, 310, 358, 424, 532, 562, 655, 679
Ppu21I YACGTR 1 cut(s) 663
PscI ACATGT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 663
PspEI GGTNACC 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 93
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 5 cut(s) 349, 394, 419, 625, 715
PspPI GGNCC 4 cut(s) 97, 261, 393, 556
PstI CTGCAG 3 cut(s) 41, 72, 543
PsuI RGATCY 3 cut(s) 424, 550, 713
RsaI GTAC 3 cut(s) 223, 403, 695
RsaNI GTAC 3 cut(s) 222, 402, 694
SacII CCGCGG 1 cut(s) 291
Sau3AI GATC 4 cut(s) 75, 424, 550, 713
Sau96I GGNCC 4 cut(s) 97, 261, 393, 556
SchI GAGTC 8 cut(s) 53, 310, 358, 424, 533, 562, 656, 680
ScrFI CCNGG 8 cut(s) 95, 233, 265, 308, 352, 454, 621, 679
SetI ASST 9 cut(s) 8, 61, 279, 339, 484, 537, 561, 665, 729
SfaNI GCATC 2 cut(s) 60, 386
SfcI CTRYAG 3 cut(s) 37, 68, 539
SfiI GGCCNNNNNGGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 3 cut(s) 261, 393, 556
SsiI CCGC 9 cut(s) 159, 245, 288, 290, 312, 322, 396, 548, 686
StyD4I CCNGG 8 cut(s) 93, 231, 263, 306, 350, 452, 619, 677
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 109, 226, 301
TaiI ACGT 2 cut(s) 61, 665
TaqI TCGA 4 cut(s) 78, 207, 294, 669
TaqII GACCGA 1 cut(s) 607
TauI GCSGC 2 cut(s) 290, 325
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 8 cut(s) 6, 15, 36, 39, 253, 479, 538, 541
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 2 cut(s) 142, 650
TspGWI ACGGA 2 cut(s) 419, 723
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 3 cut(s) 261, 393, 556
XceI RCATGY 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.