pycom02g14850

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012765
Physical Location & Seq
Reverse (-)
11509242 .. 11510060
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14850.2

Sequence Viewer

Length: 732 bp
ATGAGTTGCAACGGCTGTCGAGTTCTCCGAAAGGGCTGCAGCGAGTCATGCATGCTCCGCCCCTGCCTCCAGTGGATCGAAACCCCCGAAGCCCAAGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGATTCCCAACGACCCGTTCTGTTTCAGTCCTTGTTGTTTGAAGCCTGCGGCCGAACGGTCAATCCGGTCAACGGAGCGGTTGGGCTGCTCTGGACCGGCAACTGGCACGTCTGCCAGGCCGCCGTCGAAACCGTCCTCCTCGGCGGCACGCTCCGGCCGATTCCCGAGCTCCTCGGCGGAAGGTCCACTCCCGACGAGGCCTCCGAGGCCGACGTCGGCGGCGTCATCAACTGTACGGACATGTGGAGGCTCCGAGATCCGAGTCACAACTCCGGTTCCTCCTCCCGGTCCGCCAGGGCCTCCTCGCCAAAACGCAAGCGGTCCACAGCCGATGACGAGTCGTCCACCAAGGTACTCCAGCACCAAGCGGATCTGGATCTCCGGCTGACCCCAACCCTGTCTTTCAAACCCAAGCCCAAACCCGAGACCCGACGACCCGGAACCCCGTCCATGAACTCGGAGGAGTCCGGCGTCACAACGTGCTTCGAGAGCGGCTTGGCGGATCACCATCCGTCCTCTTACGCCGTGGGACCGGAGAGAAAGCTTCTCAACTTGTTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

244

Amino Acids

26.31

Weight (kDa)

8.4

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37540
fragaria_vesca FvH4_1g17380
malus_domestica MD00G1015800.v1.1 MD15G1294700.v1.1
prunus_persica Prupe.6G223100_v2.0.a1
pyrus_communis pycom02g14850 pycom15g25750
rosa_chinensis RchiOBHm_Chr2g0107561
rosa_laevigata RLG00000017590
rosa_multiflora Rmu_sc0000800.1_g000024
rosa_roxburghii Rroxscaffold_2G00136210 Rroxscaffold_3G00244370
rosa_rugosa Rorug02G0145000
rosa_samantha Rh2AG194900 Rh2BG207500 Rh2CG200000 Rh2DG202400
rosa_wichuraiana Rw2G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 384
AccBSI CCGCTC 2 cut(s) 245, 660
AccII CGCG 1 cut(s) 135
AclWI GGATC 5 cut(s) 83, 419, 546, 552, 678
AcoI YGGCCR 3 cut(s) 130, 217, 323
AcyI GRCGYC 3 cut(s) 381, 390, 639
AdeI CACNNNGTG 1 cut(s) 648
AfaI GTAC 2 cut(s) 403, 522
AfiI CCNNNNNNNGG 3 cut(s) 239, 270, 453
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 209, 574
AhdI GACNNNNNGTC 1 cut(s) 508
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 2 cut(s) 282, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 2 cut(s) 337, 712
AluI AGCT 2 cut(s) 337, 712
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 5 cut(s) 83, 419, 546, 552, 678
Ama87I CYCGRG 2 cut(s) 332, 590
AoxI GGCC 9 cut(s) 97, 130, 139, 217, 285, 323, 366, 375, 465
ApeKI GCWGC 3 cut(s) 36, 39, 253
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 6 cut(s) 261, 351, 456, 465, 489, 698
AsuC2I CCSGG 2 cut(s) 454, 606
AsuHPI GGTGA 1 cut(s) 665
AvaI CYCGRG 2 cut(s) 332, 590
AvaII GGWCC 5 cut(s) 261, 351, 456, 489, 698
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 23, 51, 240
BccI CCATC 1 cut(s) 684
BceAI ACGGC 4 cut(s) 28, 146, 275, 677
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 2 cut(s) 284, 463
BcnI CCSGG 2 cut(s) 454, 606
BcoDI GTCTC 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 37
BglI GCCNNNNNGGC 2 cut(s) 138, 374
BisI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 661
BlsI GCNGC 9 cut(s) 38, 41, 134, 218, 255, 289, 314, 389, 662
Bme1390I CCNGG 4 cut(s) 284, 454, 463, 606
Bme18I GGWCC 5 cut(s) 261, 351, 456, 489, 698
BmeRI GACNNNNNGTC 1 cut(s) 508
BmeT110I CYCGRG 2 cut(s) 332, 590
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 6 cut(s) 261, 351, 456, 465, 489, 698
BmiI GGNNCC 4 cut(s) 419, 445, 610, 699
BmrFI CCNGG 4 cut(s) 284, 454, 463, 606
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 53, 509
BpuMI CCSGG 2 cut(s) 454, 606
BsaBI GATNNNNATC 2 cut(s) 543, 675
BsaHI GRCGYC 3 cut(s) 381, 390, 639
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 7 cut(s) 94, 307, 340, 372, 462, 516, 693
BsaWI WCCGGW 3 cut(s) 232, 440, 700
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 270, 453
Bse118I RCCGGY 2 cut(s) 137, 263
Bse1I ACTGG 2 cut(s) 70, 275
Bse8I GATNNNNATC 2 cut(s) 543, 675
BseBI CCWGG 2 cut(s) 284, 463
BseDI CCNNGG 7 cut(s) 94, 307, 340, 372, 462, 516, 693
BseGI GGATG 1 cut(s) 676
BseJI GATNNNNATC 2 cut(s) 543, 675
BseLI CCNNNNNNNGG 3 cut(s) 239, 270, 453
BseNI ACTGG 2 cut(s) 70, 275
BseRI GAGGAG 5 cut(s) 296, 329, 439, 460, 644
BseX3I CGGCCG 2 cut(s) 217, 323
BseXI GCAGC 3 cut(s) 23, 51, 240
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 2 cut(s) 220, 326
BshFI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 467
BsiEI CGRYCG 2 cut(s) 220, 326
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 332, 590
BslFI GGGAC 2 cut(s) 149, 711
BslI CCNNNNNNNGG 3 cut(s) 239, 270, 453
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 149, 711
BsnI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 467
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 332, 590
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 5 cut(s) 75, 424, 538, 544, 670
BspANI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 467
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 419, 445, 610, 699
BspMAI CTGCAG 1 cut(s) 41
BspPI GGATC 5 cut(s) 83, 419, 546, 552, 678
BspTNI GGTCTC 1 cut(s) 587
BsrBI CCGCTC 2 cut(s) 245, 660
BsrFI RCCGGY 2 cut(s) 137, 263
BsrI ACTGG 2 cut(s) 70, 275
BssAI RCCGGY 2 cut(s) 137, 263
BssECI CCNNGG 7 cut(s) 94, 307, 340, 372, 462, 516, 693
BssMI GATC 5 cut(s) 75, 424, 538, 544, 670
BssNI GRCGYC 3 cut(s) 381, 390, 639
BssT1I CCWWGG 2 cut(s) 94, 516
Bst2UI CCWGG 2 cut(s) 284, 463
Bst4CI ACNGT 4 cut(s) 109, 226, 301, 401
BstACI GRCGYC 3 cut(s) 381, 390, 639
BstC8I GCNNGC 5 cut(s) 53, 139, 214, 317, 485
BstDSI CCRYGG 1 cut(s) 693
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 78, 427, 541, 547, 673
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 5 cut(s) 75, 424, 538, 544, 670
BstMCI CGRYCG 2 cut(s) 220, 326
BstMWI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 657
BstNI CCWGG 2 cut(s) 284, 463
BstNSI RCATGY 2 cut(s) 55, 412
BstSCI CCNGG 4 cut(s) 282, 452, 461, 604
BstSFI CTRYAG 1 cut(s) 37
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 23, 51, 240
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 3 cut(s) 424, 538, 544
BstYI RGATCY 3 cut(s) 424, 538, 544
BstZI CGGCCG 2 cut(s) 217, 323
BsuRI GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 467
BtgI CCRYGG 1 cut(s) 693
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 5 cut(s) 53, 139, 214, 317, 485
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 2 cut(s) 137, 263
Cfr13I GGNCC 6 cut(s) 261, 351, 456, 465, 489, 698
CpoI CGGWCCG 1 cut(s) 456
CseI GACGC 2 cut(s) 379, 628
Csp6I GTAC 2 cut(s) 402, 521
CspI CGGWCCG 1 cut(s) 456
CviAII CATG 5 cut(s) 48, 52, 145, 409, 619
CviQI GTAC 2 cut(s) 402, 521
DpnI GATC 5 cut(s) 77, 426, 540, 546, 672
DpnII GATC 5 cut(s) 75, 424, 538, 544, 670
DraIII CACNNNGTG 1 cut(s) 648
DriI GACNNNNNGTC 1 cut(s) 508
EaeI YGGCCR 3 cut(s) 130, 217, 323
EagI CGGCCG 2 cut(s) 217, 323
Eam1105I GACNNNNNGTC 1 cut(s) 508
EciI GGCGGA 5 cut(s) 47, 148, 360, 448, 683
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 2 cut(s) 217, 323
Eco130I CCWWGG 2 cut(s) 94, 516
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 5 cut(s) 261, 351, 456, 489, 698
Eco52I CGGCCG 2 cut(s) 217, 323
Eco53kI GAGCTC 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 332, 590
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 282, 461
EcoT14I CCWWGG 2 cut(s) 94, 516
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 2 cut(s) 94, 516
FaeI CATG 5 cut(s) 51, 55, 148, 412, 622
FaiI YATR 5 cut(s) 49, 53, 146, 410, 620
FaqI GGGAC 2 cut(s) 149, 711
FatI CATG 5 cut(s) 47, 51, 144, 408, 618
Fnu4HI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 661
FokI GGATG 1 cut(s) 663
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 661
GlaI GCGC 1 cut(s) 136
GluI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 661
GsuI CTGGAG 2 cut(s) 53, 509
HaeIII GGCC 9 cut(s) 99, 132, 141, 219, 287, 325, 368, 377, 467
HgaI GACGC 2 cut(s) 379, 628
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 3 cut(s) 381, 390, 639
Hin1II CATG 5 cut(s) 51, 55, 148, 412, 622
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 6 cut(s) 44, 170, 328, 430, 506, 632
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 4 cut(s) 238, 354, 492, 513
Hpy188I TCNGA 5 cut(s) 29, 373, 422, 429, 628
Hpy188III TCNNGA 5 cut(s) 259, 332, 359, 542, 655
Hpy8I GTNNAC 4 cut(s) 238, 354, 492, 513
Hpy99I CGWCG 6 cut(s) 119, 296, 365, 383, 386, 603
HpyAV CCTTC 2 cut(s) 160, 342
HpyCH4III ACNGT 4 cut(s) 109, 226, 301, 401
HpyCH4IV ACGT 3 cut(s) 276, 381, 647
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 657
HpySE526I ACGT 3 cut(s) 276, 381, 647
Hsp92I GRCGYC 3 cut(s) 381, 390, 639
Hsp92II CATG 5 cut(s) 51, 55, 148, 412, 622
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 75, 424, 538, 544, 670
LmnI GCTCC 5 cut(s) 60, 242, 324, 342, 423
Lsp1109I GCAGC 3 cut(s) 23, 51, 240
MaeII ACGT 3 cut(s) 276, 381, 647
MaeIII GTNAC 2 cut(s) 431, 640
MalI GATC 5 cut(s) 77, 426, 540, 546, 672
MbiI CCGCTC 2 cut(s) 245, 660
MboI GATC 5 cut(s) 75, 424, 538, 544, 670
MboII GAAGA 1 cut(s) 103
MflI RGATCY 3 cut(s) 424, 538, 544
MhlI GDGCHC 1 cut(s) 339
MlyI GAGTC 4 cut(s) 53, 439, 515, 641
Mph1103I ATGCAT 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 137
MspR9I CCNGG 4 cut(s) 284, 454, 463, 606
MvaI CCWGG 2 cut(s) 284, 463
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 48, 57, 138, 374, 657
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 2 cut(s) 454, 606
NdeII GATC 5 cut(s) 75, 424, 538, 544, 670
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 5 cut(s) 51, 55, 148, 412, 622
NlaIV GGNNCC 4 cut(s) 419, 445, 610, 699
NmeAIII GCCGAG 2 cut(s) 288, 321
NmuCI GTSAC 2 cut(s) 431, 640
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 55, 412
PaeI GCATGC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 368
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 5 cut(s) 25, 84, 323, 369, 387
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 170, 328
PkrI GCNGC 9 cut(s) 38, 41, 134, 218, 255, 289, 314, 389, 662
PleI GAGTC 4 cut(s) 52, 438, 514, 640
PpsI GAGTC 4 cut(s) 52, 438, 514, 640
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 282, 461
PspGI CCWGG 2 cut(s) 282, 461
PspN4I GGNNCC 4 cut(s) 419, 445, 610, 699
PspPI GGNCC 6 cut(s) 261, 351, 456, 465, 489, 698
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 3 cut(s) 424, 538, 544
RsaI GTAC 2 cut(s) 403, 522
RsaNI GTAC 2 cut(s) 402, 521
Rsr2I CGGWCCG 1 cut(s) 456
RsrII CGGWCCG 1 cut(s) 456
SacI GAGCTC 1 cut(s) 339
SatI GCNGC 9 cut(s) 37, 40, 133, 217, 254, 288, 313, 388, 661
Sau3AI GATC 5 cut(s) 75, 424, 538, 544, 670
Sau96I GGNCC 6 cut(s) 261, 351, 456, 465, 489, 698
SchI GAGTC 4 cut(s) 53, 439, 515, 641
ScrFI CCNGG 4 cut(s) 284, 454, 463, 606
SduI GDGCHC 1 cut(s) 339
SetI ASST 7 cut(s) 279, 339, 353, 384, 522, 650, 714
SfcI CTRYAG 1 cut(s) 37
SfiI GGCCNNNNNGGCC 2 cut(s) 138, 374
SinI GGWCC 5 cut(s) 261, 351, 456, 489, 698
SphI GCATGC 1 cut(s) 55
SseBI AGGCCT 1 cut(s) 368
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 4 cut(s) 282, 452, 461, 604
StyI CCWWGG 2 cut(s) 94, 516
TaaI ACNGT 4 cut(s) 109, 226, 301, 401
TaiI ACGT 3 cut(s) 279, 384, 650
TaqI TCGA 4 cut(s) 19, 78, 294, 654
TauI GCSGC 6 cut(s) 135, 219, 290, 315, 390, 663
TfiI GAWTC 2 cut(s) 170, 328
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 2 cut(s) 431, 640
TseI GCWGC 3 cut(s) 36, 39, 253
Tsp45I GTSAC 2 cut(s) 431, 640
TspDTI ATGAA 2 cut(s) 142, 635
TspGWI ACGGA 3 cut(s) 255, 419, 669
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 5 cut(s) 261, 351, 456, 489, 698
XceI RCATGY 2 cut(s) 55, 412
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.