AT4G37630

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010963
Physical Location & Seq
Forward (+)
17679168 .. 17681264
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37630.1

Sequence Viewer

Length: 972 bp
ATGGGTGAGCCTAAAGACAGTCTCGCTCTCTTCCTCTGCCACGAATCGGAGTCTTCTCTAAACGAAGACGACGACGAGACGATTGAGAGATCTGATAAGCAAGAACCTCACTTTACTACTACGATCGATGATGAAGATTATGTGGCAGACCTTGTTCTTAAAGAGAATCTCCGATTCGAAACCCTACCCTCTAAAACGACGTCGTCTTCCGATAGATTGATTGCCATCGATTGGATTCTCACTACAAGAACAAGATTTGGGTTCCAACATCAAACAGCTTACATTGCAATCTCATACTTCGATCTGTTTCTCCACAAAAGATTCATCGGTTTGCAGAAAGATGAAACATGGGCGATGCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCTAAAATGGAGGAACGTATTGTTCCTGGTTTATCACAATACCCTCAAGATCATGACTTCGTTTTCAAACCCGATGTCATTCGTAAAACTGAACTGTTGATTCTATCCACATTGGACTGGAAGATGAACTTGATCACTCCTTTTCATTACTTCAACTACTTCCTTGCTAAAATCTCTCAGGACAACCATTCTGTTTCTAAAGACTTGGTGTTGTTAAGATCCTCTGATTCTCTTCTTGCTTTAACTAAAGAGATAAGTTTTACGGAGTATCGACAGTTTGTTGTTGCTGCTGTTACTACATTGCTAGCTTCTTCTTCTACCTCATCGGATATTAGATTGACTAGAGAAGAGATAGCTAACAAGTTTGGTTCGATCTCTTGGTGGACTTCTAATGAGAATGAAAATGTATATTTGTGTTATCAGAGAACGCTAGAGATTGAGGAGAGGAAACATATGACACCTCCACCGGAAATAGCGGTTTCTCGCGAACCGCCGGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATTCTGATCAAAGTTCTCCACCAGCCAAGAGAATGCGTAGGCTATGA

Protein Analysis

323

Amino Acids

37.17

Weight (kDa)

5.3

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 66 - 173 5.3e-20 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37630 AT4G37630 AT4G37630
fragaria_vesca FvH4_1g17530 FvH4_1g17530
malus_domestica MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis pycom15g25870
rosa_chinensis RchiOBHm_Chr2g0107771
rosa_laevigata RLG00000017614
rosa_multiflora Rmu_sc0006215.1_g000005
rosa_roxburghii Rroxscaffold_2G00135970
rosa_rugosa Rorug02G0147400
rosa_samantha Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana Rw2G015580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 231
AccII CGCG 1 cut(s) 876
AciI CCGC 2 cut(s) 866, 881
AclWI GGATC 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 873
AcyI GRCGYC 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 46, 231, 890
AgsI TTSAA 2 cut(s) 457, 544
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 5 cut(s) 278, 374, 389, 698, 746
AluI AGCT 5 cut(s) 278, 374, 389, 698, 746
Alw26I GTCTC 2 cut(s) 26, 71
AlwI GGATC 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 389, 677
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
AspLEI GCGC 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 177
AsuNHI GCTAGC 1 cut(s) 694
BbsI GAAGAC 3 cut(s) 45, 72, 198
BbvI GCAGC 2 cut(s) 376, 664
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 2 cut(s) 522, 931
BcoDI GTCTC 2 cut(s) 26, 71
BfaI CTAG 3 cut(s) 695, 732, 821
BfoI RGCGCY 1 cut(s) 903
BglII AGATCT 1 cut(s) 89
BisI GCNGC 2 cut(s) 390, 678
BlsI GCNGC 2 cut(s) 391, 679
Bme1390I CCNGG 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 345
BmtI GCTAGC 1 cut(s) 698
BpiI GAAGAC 3 cut(s) 45, 72, 198
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 420
Bsa29I ATCGAT 2 cut(s) 126, 228
BsaBI GATNNNNATC 3 cut(s) 224, 364, 930
BsaHI GRCGYC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 856
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 231, 890
Bse118I RCCGGY 1 cut(s) 883
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 2 cut(s) 282, 689
Bse8I GATNNNNATC 3 cut(s) 224, 364, 930
BseBI CCWGG 1 cut(s) 417
BseCI ATCGAT 2 cut(s) 126, 228
BseJI GATNNNNATC 3 cut(s) 224, 364, 930
BseLI CCNNNNNNNGG 3 cut(s) 46, 231, 890
BseMI GCAATG 2 cut(s) 282, 689
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 2 cut(s) 376, 664
Bsh1236I CGCG 1 cut(s) 876
Bsh1285I CGRYCG 1 cut(s) 126
BshVI ATCGAT 2 cut(s) 126, 228
BsiEI CGRYCG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 857, 884
BslI CCNNNNNNNGG 3 cut(s) 46, 231, 890
BsmAI GTCTC 2 cut(s) 26, 71
BsmBI CGTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 963
Bsp119I TTCGAA 1 cut(s) 177
Bsp143I GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
Bsp68I TCGCGA 1 cut(s) 876
BspACI CCGC 2 cut(s) 866, 881
BspCNI CTCAG 1 cut(s) 580
BspDI ATCGAT 2 cut(s) 126, 228
BspFNI CGCG 1 cut(s) 876
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 282, 689
BsrFI RCCGGY 1 cut(s) 883
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 883
BssMI GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 20, 486, 666
Bst6I CTCTTC 3 cut(s) 35, 627, 732
BstACI GRCGYC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 696, 885
BstDEI CTNAG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 876
BstH2I RGCGCY 1 cut(s) 903
BstHHI GCGC 1 cut(s) 902
BstKTI GATC 8 cut(s) 92, 126, 304, 442, 525, 611, 765, 934
BstMAI GTCTC 2 cut(s) 26, 71
BstMBI GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 284, 906
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 2 cut(s) 376, 664
BstV2I GAAGAC 3 cut(s) 45, 72, 198
BstX2I RGATCY 2 cut(s) 89, 608
BstYI RGATCY 2 cut(s) 89, 608
Bsu15I ATCGAT 2 cut(s) 126, 228
BsuTUI ATCGAT 2 cut(s) 126, 228
BtgZI GCGATG 1 cut(s) 368
BtuMI TCGCGA 1 cut(s) 876
Cac8I GCNNGC 2 cut(s) 696, 885
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 902
Cfr10I RCCGGY 1 cut(s) 883
ClaI ATCGAT 2 cut(s) 126, 228
CviAII CATG 2 cut(s) 348, 443
CviJI RGCY 9 cut(s) 10, 278, 374, 389, 698, 746, 887, 950, 967
CviKI_1 RGCY 9 cut(s) 10, 278, 374, 389, 698, 746, 887, 950, 967
DdeI CTNAG 1 cut(s) 567
DpnI GATC 8 cut(s) 91, 125, 303, 441, 524, 610, 764, 933
DpnII GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
Eam1104I CTCTTC 3 cut(s) 35, 627, 732
EarI CTCTTC 3 cut(s) 35, 627, 732
Eco57I CTGAAG 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 351, 446
FaiI YATR 8 cut(s) 141, 295, 349, 444, 799, 843, 845, 970
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 2 cut(s) 347, 442
FauNDI CATATG 1 cut(s) 843
FbaI TGATCA 2 cut(s) 522, 931
Fnu4HI GCNGC 2 cut(s) 390, 678
Fsp4HI GCNGC 2 cut(s) 390, 678
FspBI CTAG 3 cut(s) 695, 732, 821
GlaI GCGC 1 cut(s) 901
GluI GCNGC 2 cut(s) 390, 678
HaeII RGCGCY 1 cut(s) 903
HapII CCGG 2 cut(s) 857, 884
HhaI GCGC 1 cut(s) 902
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 351, 446
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HinfI GANTC 9 cut(s) 44, 50, 166, 174, 235, 321, 490, 617, 926
HpaII CCGG 2 cut(s) 857, 884
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 774
Hpy188I TCNGA 8 cut(s) 49, 94, 173, 211, 616, 718, 813, 931
Hpy188III TCNNGA 5 cut(s) 437, 443, 569, 875, 891
Hpy8I GTNNAC 1 cut(s) 774
Hpy99I CGWCG 4 cut(s) 74, 77, 202, 205
HpyCH4III ACNGT 3 cut(s) 20, 486, 666
HpyCH4IV ACGT 2 cut(s) 200, 406
HpyCH4V TGCA 2 cut(s) 287, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 906
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 2 cut(s) 200, 406
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 351, 446
HspAI GCGC 1 cut(s) 900
KroI GCCGGC 1 cut(s) 883
KroNI GCCGGC 1 cut(s) 885
Ksp22I TGATCA 2 cut(s) 522, 931
Kzo9I GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
LpnPI CCDG 8 cut(s) 402, 429, 493, 554, 870, 876, 897, 960
Lsp1109I GCAGC 2 cut(s) 376, 664
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 695, 732, 821
MaeII ACGT 2 cut(s) 200, 406
MaeIII GTNAC 1 cut(s) 682
MalI GATC 8 cut(s) 91, 125, 303, 441, 524, 610, 764, 933
MboI GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
MflI RGATCY 2 cut(s) 89, 608
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 289
MroNI GCCGGC 1 cut(s) 883
MseI TTAA 3 cut(s) 159, 605, 632
MspI CCGG 2 cut(s) 857, 884
MspR9I CCNGG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 963
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 2 cut(s) 284, 906
NaeI GCCGGC 1 cut(s) 885
NdeI CATATG 1 cut(s) 843
NdeII GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
NgoMIV GCCGGC 1 cut(s) 883
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 2 cut(s) 351, 446
NlaIV GGNNCC 1 cut(s) 263
NruI TCGCGA 1 cut(s) 876
NspV TTCGAA 1 cut(s) 177
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 963
PdiI GCCGGC 1 cut(s) 885
PfeI GAWTC 8 cut(s) 44, 166, 174, 235, 321, 490, 617, 926
PflFI GACNNNGTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 2 cut(s) 391, 679
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 263
PsuI RGATCY 2 cut(s) 89, 608
PsyI GACNNNGTC 1 cut(s) 202
PvuI CGATCG 1 cut(s) 126
RruI TCGCGA 1 cut(s) 876
SaqAI TTAA 3 cut(s) 159, 605, 632
SatI GCNGC 2 cut(s) 390, 678
Sau3AI GATC 8 cut(s) 89, 123, 301, 439, 522, 608, 762, 931
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 417
SfaNI GCATC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SsiI CCGC 2 cut(s) 866, 881
SspMI CTAG 3 cut(s) 695, 732, 821
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 20, 486, 666
TaiI ACGT 2 cut(s) 203, 409
TaqI TCGA 6 cut(s) 126, 177, 228, 300, 661, 761
TfiI GAWTC 8 cut(s) 44, 166, 174, 235, 321, 490, 617, 926
Tru1I TTAA 3 cut(s) 159, 605, 632
Tru9I TTAA 3 cut(s) 159, 605, 632
TseI GCWGC 2 cut(s) 389, 677
TspDTI ATGAA 6 cut(s) 147, 313, 357, 524, 530, 804
TspGWI ACGGA 1 cut(s) 668
Tth111I GACNNNGTC 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 231
XspI CTAG 3 cut(s) 695, 732, 821
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.