Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Forward (+)

19166943 .. 19170075

Gene Structure 3133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG205300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGGACTCTGAGTTCTCTACCCTTCTGTGCCGAGAAGATGAGACTTGCTTGATGAATCAAGTGGAAGATGATGATGAAGAATTAGAAAGTTTCTGCCCGTTTTTTGTTTCTGAGAATGAAGACGAGTATATTGAGAATTTGGTTCAGAAGGAAAGTTATTGCTTTGGATCCAAAGGGTTTGTACCCTTTACTCATTGCTCTGCCACAAGCTGGTTCAAAGCTGCTCGCTTGGATTCTATTGATTGGATTTTCAATGCAAGGGCAGAATTTGGTTTCCGGTTGCAAACAGCATATTTATCTATCACATACTATGATCTGTTTCTTTCAAAGCGATCCATTGATGATGGGAAACTGTGGGCGTTTAGACTATTATCAGTGGCATGTTTATCCTTGGCGGCCAAGATGGAAGAAATCAAAGTACCATCTTTGTCAGAATTTCAGGTTCAAGATTATGATTTTGAAGGCAGAACGATTCAGAGAATGGAGCTAATGGTGTTAAGTACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTTCTTATCTGCATAACTTCGTTTATAAGTTCTGCTGTGAATGTGAATCCAGACCAAAAGGACTAGTCTCTGGTGCTATAAGACTCATCGTGGCAATGACAAAAGAGATTGATTTAATAGATACTCGGCCATCTGTTATTGCAGCAGCTGCAATATTAGCACTAGTTGATGGTCAGTTAACTAGAAAACTTCTGGAGCTTAAGATAAGCCCGATCTCATTCTGGCATTCCCAAGATTATGTGAGTCTGCTAGCGACTTGTATTTGTTCGTTGAGATTATTATTTAAGAACTTAAAATCGATAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

282

Amino Acids

32.38

Weight (kDa)

4.79

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	74 - 174	6.6e-23	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	213
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	3 cut(s)	165, 178, 330
AcoI	YGGCCR	2 cut(s)	399, 665
AcsI	RAATTY	3 cut(s)	139, 269, 437
AfaI	GTAC	3 cut(s)	186, 423, 505
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	220, 256, 330, 449, 464, 528
AhlI	ACTAGT	2 cut(s)	601, 700
AloI	GAACNNNNNNTCC	3 cut(s)	31, 508, 540
AluBI	AGCT	5 cut(s)	213, 224, 490, 686, 736
AluI	AGCT	5 cut(s)	213, 224, 490, 686, 736
Alw26I	GTCTC	2 cut(s)	38, 610
AlwI	GGATC	3 cut(s)	165, 178, 330
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	399, 665
ApeKI	GCWGC	4 cut(s)	224, 680, 683, 686
ApoI	RAATTY	3 cut(s)	139, 269, 437
AsuNHI	GCTAGC	1 cut(s)	787
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	211, 673, 692, 695
BccI	CCATC	5 cut(s)	341, 400, 433, 676, 701
BcoDI	GTCTC	2 cut(s)	38, 610
BcuI	ACTAGT	2 cut(s)	601, 700
BfaI	CTAG	4 cut(s)	602, 701, 720, 788
BfrI	CTTAAG	1 cut(s)	737
BisI	GCNGC	5 cut(s)	225, 399, 681, 684, 687
BlsI	GCNGC	5 cut(s)	226, 400, 682, 685, 688
BmiI	GGNNCC	1 cut(s)	172
BmtI	GCTAGC	1 cut(s)	791
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse3DI	GCAATG	2 cut(s)	196, 639
BseCI	ATCGAT	1 cut(s)	836
BseDI	CCNNGG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	2 cut(s)	196, 639
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	211, 673, 692, 695
BshFI	GGCC	2 cut(s)	401, 667
BshVI	ATCGAT	1 cut(s)	836
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	38, 610
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	2 cut(s)	401, 667
Bsp143I	GATC	4 cut(s)	170, 316, 335, 750
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	2 cut(s)	401, 667
BspCNI	CTCAG	2 cut(s)	4, 106
BspDI	ATCGAT	1 cut(s)	836
BspLI	GGNNCC	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	791
BspPI	GGATC	3 cut(s)	165, 178, 330
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	196, 639
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	4 cut(s)	170, 316, 335, 750
BssT1I	CCWWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	229, 789
BstDEI	CTNAG	2 cut(s)	12, 114
BstKTI	GATC	4 cut(s)	173, 319, 338, 753
BstMAI	GTCTC	2 cut(s)	38, 610
BstMBI	GATC	4 cut(s)	170, 316, 335, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 695
BstNSI	RCATGY	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	211, 673, 692, 695
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	836
BsuRI	GGCC	2 cut(s)	401, 667
BsuTUI	ATCGAT	1 cut(s)	836
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	229, 789
CaiI	CAGNNNCTG	1 cut(s)	686
ClaI	ATCGAT	1 cut(s)	836
Csp6I	GTAC	3 cut(s)	185, 422, 504
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	8 cut(s)	213, 224, 401, 490, 667, 686, 736, 747
CviKI_1	RGCY	8 cut(s)	213, 224, 401, 490, 667, 686, 736, 747
CviQI	GTAC	3 cut(s)	185, 422, 504
DdeI	CTNAG	2 cut(s)	12, 114
DpnI	GATC	4 cut(s)	172, 318, 337, 752
DpnII	GATC	4 cut(s)	170, 316, 335, 750
EaeI	YGGCCR	2 cut(s)	399, 665
Eco130I	CCWWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	387
FatI	CATG	1 cut(s)	383
Fnu4HI	GCNGC	5 cut(s)	225, 399, 681, 684, 687
Fsp4HI	GCNGC	5 cut(s)	225, 399, 681, 684, 687
FspBI	CTAG	4 cut(s)	602, 701, 720, 788
GluI	GCNGC	5 cut(s)	225, 399, 681, 684, 687
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	401, 667
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	7 cut(s)	8, 58, 236, 475, 584, 621, 781
HpaI	GTTAAC	1 cut(s)	717
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	5 cut(s)	13, 115, 150, 436, 480
Hpy188III	TCNNGA	3 cut(s)	449, 588, 731
Hpy8I	GTNNAC	1 cut(s)	717
HpyAV	CCTTC	3 cut(s)	35, 145, 458
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	260, 286, 550, 680, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 695
HpyF3I	CTNAG	2 cut(s)	12, 114
Hsp92II	CATG	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	170, 316, 335, 750
LmnI	GCTCC	2 cut(s)	487, 733
LpnPI	CCDG	7 cut(s)	199, 293, 428, 594, 601, 716, 745
Lsp1109I	GCAGC	4 cut(s)	211, 673, 692, 695
MaeI	CTAG	4 cut(s)	602, 701, 720, 788
MalI	GATC	4 cut(s)	172, 318, 337, 752
MboI	GATC	4 cut(s)	170, 316, 335, 750
MboII	GAAGA	5 cut(s)	50, 80, 92, 134, 422
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	5 cut(s)	83, 139, 269, 437, 844
MlyI	GAGTC	3 cut(s)	2, 615, 790
MseI	TTAA	6 cut(s)	500, 653, 716, 738, 822, 830
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	686
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	763
MwoI	GCNNNNNNNGC	2 cut(s)	686, 695
NdeII	GATC	4 cut(s)	170, 316, 335, 750
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	2 cut(s)	59, 643
NspI	RCATGY	1 cut(s)	387
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	4 cut(s)	58, 236, 475, 584
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	226, 400, 682, 685, 688
PleI	GAGTC	3 cut(s)	2, 615, 789
PpsI	GAGTC	3 cut(s)	2, 615, 789
PsiI	TTATAA	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	3 cut(s)	186, 423, 505
RsaNI	GTAC	3 cut(s)	185, 422, 504
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	6 cut(s)	500, 653, 716, 738, 822, 830
SatI	GCNGC	5 cut(s)	225, 399, 681, 684, 687
Sau3AI	GATC	4 cut(s)	170, 316, 335, 750
SchI	GAGTC	3 cut(s)	2, 615, 790
SetI	ASST	6 cut(s)	215, 226, 447, 492, 688, 738
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SpeI	ACTAGT	2 cut(s)	601, 700
Sse9I	AATT	5 cut(s)	83, 139, 269, 437, 844
SsiI	CCGC	1 cut(s)	398
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	4 cut(s)	602, 701, 720, 788
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	836
TasI	AATT	5 cut(s)	83, 139, 269, 437, 844
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	4 cut(s)	58, 236, 475, 584
Tru1I	TTAA	6 cut(s)	500, 653, 716, 738, 822, 830
Tru9I	TTAA	6 cut(s)	500, 653, 716, 738, 822, 830
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	4 cut(s)	224, 680, 683, 686
TspDTI	ATGAA	3 cut(s)	71, 93, 135
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	213
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	139, 269, 437
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	4 cut(s)	602, 701, 720, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.