FvH4_1g17530

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010963
Physical Location & Seq
Forward (+)
10202046 .. 10204718
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17530.t1

Sequence Viewer

Length: 1002 bp
ATGGAGGGCTCTGAGTTCTCTAGCCTTCTCTGCCAAGAAGACGAGACTTGCTTGATCAATCAAGTGGAAGATGATGAAGAATCAGAAGACAGTGCGATTGGTTTCTACCCTTTTTTTGTTTCTGAAAATGAAGATGAGTATGTTGAGAACTTGTTTCTGAAGGAGAGTTATTGCTTTGGATCCAAGGGATTTGTACCCTTTAGCCATTGCTCTGCCACAACCTGGTTCAAAGCTGCTCGCTTGGATTCTATTGATTGGATTTTCAATGCCAGGGCAGAATTTGGTTTCCGGTTGCAAACAGCATATTTGTCGATCACATACTATGATCGGTTCCTATCAAAGCGATCCATTGATGATGGGAAACTGTGGGCTTTTAGATTACTATCAGTGGCATGTTTATCCTTGGCGGCGAAGATGGAAGAAATCAAAGTACCATCTTTGTCACAATTTCAGGTTCAAGATTACGATTTTGAAAGCAGAACCATTCAGAGAATGGAGCTATTGGTGTTAAGTACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTGCTTATTTGCCTAACTTCATCAATAAATTCTGTTGTGAAAGTGAATCCAGACCAAAAGGACTTCTCTCTGGTGCTATAAGCCTCATTGTGGCAATGACTAAAGAGATTGAGTTAACAGATACTCGGCCATCTATTATTGCAGGAGCTGCAATATTAGCACTAGTTGATGGTCAATTAACTAGAAATCTTCTGGACCTTAAGATGAGCTCGATATCATTCTGGCATTCCGAAGATTATGATCATATATATTCCTGTTACAATCTTGTGCAGGAAATTGTGGAAAGGAAAGATAAGACACCATCCAAGTTTTCACTCTCTTCCCCTAATGTGTTACCAACACAAGCAAGCACAATTGATGTGCTTGAAAACTCAGGGGGAACAAAGAGAAGGCTTACCTTCAGTGACTCTGATGACCTCATCAGTTGCCCAACAAAGAAAATTCACATGCCATAG

Protein Analysis

334

Amino Acids

37.8

Weight (kDa)

4.73

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 78 - 177 1.5e-24 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37630 AT4G37630 AT4G37630
fragaria_vesca FvH4_1g17530 FvH4_1g17530
malus_domestica MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis pycom15g25870
rosa_chinensis RchiOBHm_Chr2g0107771
rosa_laevigata RLG00000017614
rosa_multiflora Rmu_sc0006215.1_g000005
rosa_roxburghii Rroxscaffold_2G00135970
rosa_rugosa Rorug02G0147400
rosa_samantha Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana Rw2G015580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 1 cut(s) 407
AclWI GGATC 3 cut(s) 174, 187, 339
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 3 cut(s) 278, 575, 987
AcuI CTGAAG 2 cut(s) 179, 931
AfaI GTAC 3 cut(s) 195, 432, 514
AfiI CCNNNNNNNGG 2 cut(s) 222, 637
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 6 cut(s) 229, 265, 458, 473, 537, 914
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 2 cut(s) 221, 269
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 4 cut(s) 233, 499, 695, 756
AluI AGCT 4 cut(s) 233, 499, 695, 756
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 3 cut(s) 174, 187, 339
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 2 cut(s) 233, 695
ApoI RAATTY 3 cut(s) 278, 575, 987
AspS9I GGNCC 1 cut(s) 742
AvaII GGWCC 1 cut(s) 742
BamHI GGATCC 1 cut(s) 179
BanII GRGCYC 2 cut(s) 11, 758
BbsI GAAGAC 2 cut(s) 45, 93
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 2 cut(s) 220, 682
BccI CCATC 6 cut(s) 350, 409, 442, 685, 710, 856
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 2 cut(s) 223, 271
BclI TGATCA 2 cut(s) 54, 787
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 3 cut(s) 21, 710, 729
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 3 cut(s) 234, 408, 696
BlsI GCNGC 3 cut(s) 235, 409, 697
Bme1390I CCNGG 2 cut(s) 223, 271
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 181, 332
BmrFI CCNGG 2 cut(s) 223, 271
BpiI GAAGAC 2 cut(s) 45, 93
BsaBI GATNNNNATC 2 cut(s) 382, 786
BsaJI CCNNGG 3 cut(s) 183, 270, 402
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 637
Bse3DI GCAATG 2 cut(s) 205, 648
Bse8I GATNNNNATC 2 cut(s) 382, 786
BseBI CCWGG 2 cut(s) 223, 271
BseDI CCNNGG 3 cut(s) 183, 270, 402
BseGI GGATG 1 cut(s) 848
BseJI GATNNNNATC 2 cut(s) 382, 786
BseLI CCNNNNNNNGG 2 cut(s) 222, 637
BseMI GCAATG 2 cut(s) 205, 648
BseMII CTCAG 1 cut(s) 933
BseXI GCAGC 2 cut(s) 220, 682
BsgI GTGCAG 1 cut(s) 836
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 758
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 222, 637
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 11, 758
Bsp143I GATC 6 cut(s) 54, 179, 312, 325, 344, 787
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 2 cut(s) 4, 932
BspLI GGNNCC 2 cut(s) 181, 332
BspPI GGATC 3 cut(s) 174, 187, 339
BspTI CTTAAG 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 205, 648
BssECI CCNNGG 3 cut(s) 183, 270, 402
BssMI GATC 6 cut(s) 54, 179, 312, 325, 344, 787
BssT1I CCWWGG 2 cut(s) 183, 402
Bst2UI CCWGG 2 cut(s) 223, 271
Bst4CI ACNGT 2 cut(s) 92, 366
Bst6I CTCTTC 1 cut(s) 871
BstAFI CTTAAG 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 238, 895
BstDEI CTNAG 2 cut(s) 12, 919
BstF5I GGATG 1 cut(s) 848
BstKTI GATC 6 cut(s) 57, 182, 315, 328, 347, 790
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 6 cut(s) 54, 179, 312, 325, 344, 787
BstMWI GCNNNNNNNGC 3 cut(s) 30, 695, 704
BstNI CCWGG 2 cut(s) 223, 271
BstNSI RCATGY 2 cut(s) 396, 997
BstSCI CCNGG 2 cut(s) 221, 269
BstV1I GCAGC 2 cut(s) 220, 682
BstV2I GAAGAC 2 cut(s) 45, 93
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 1 cut(s) 848
BtsIMutI CAGTG 3 cut(s) 97, 393, 955
Cac8I GCNNGC 2 cut(s) 238, 895
CaiI CAGNNNCTG 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 742
CsiI ACCWGGT 1 cut(s) 221
Csp6I GTAC 3 cut(s) 194, 431, 513
CviAII CATG 2 cut(s) 393, 994
CviQI GTAC 3 cut(s) 194, 431, 513
DdeI CTNAG 2 cut(s) 12, 919
DpnI GATC 6 cut(s) 56, 181, 314, 327, 346, 789
DpnII GATC 6 cut(s) 54, 179, 312, 325, 344, 787
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 871
Ecl136II GAGCTC 1 cut(s) 756
Eco130I CCWWGG 2 cut(s) 183, 402
Eco24I GRGCYC 2 cut(s) 11, 758
Eco32I GATATC 1 cut(s) 762
Eco47I GGWCC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 756
Eco57I CTGAAG 2 cut(s) 179, 931
EcoICRI GAGCTC 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 221, 269
EcoRV GATATC 1 cut(s) 762
EcoT14I CCWWGG 2 cut(s) 183, 402
EcoT38I GRGCYC 2 cut(s) 11, 758
ErhI CCWWGG 2 cut(s) 183, 402
FaeI CATG 2 cut(s) 396, 997
FatI CATG 2 cut(s) 392, 993
FbaI TGATCA 2 cut(s) 54, 787
Fnu4HI GCNGC 3 cut(s) 234, 408, 696
FokI GGATG 1 cut(s) 835
FriOI GRGCYC 2 cut(s) 11, 758
Fsp4HI GCNGC 3 cut(s) 234, 408, 696
FspBI CTAG 3 cut(s) 21, 710, 729
GluI GCNGC 3 cut(s) 234, 408, 696
HaeIII GGCC 1 cut(s) 676
HapII CCGG 1 cut(s) 289
Hin1II CATG 2 cut(s) 396, 997
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 4 cut(s) 80, 245, 593, 953
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 7 cut(s) 13, 85, 124, 159, 489, 778, 958
Hpy188III TCNNGA 3 cut(s) 458, 597, 740
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 4 cut(s) 35, 154, 930, 955
HpyCH4III ACNGT 2 cut(s) 92, 366
HpyCH4V TGCA 4 cut(s) 295, 689, 698, 817
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 695, 704
HpyF3I CTNAG 2 cut(s) 12, 919
Hsp92II CATG 2 cut(s) 396, 997
Ksp22I TGATCA 2 cut(s) 54, 787
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 6 cut(s) 54, 179, 312, 325, 344, 787
LmnI GCTCC 2 cut(s) 496, 692
Lsp1109I GCAGC 2 cut(s) 220, 682
MabI ACCWGGT 1 cut(s) 221
MaeI CTAG 3 cut(s) 21, 710, 729
MaeIII GTNAC 4 cut(s) 441, 803, 879, 950
MalI GATC 6 cut(s) 56, 181, 314, 327, 346, 789
MboI GATC 6 cut(s) 54, 179, 312, 325, 344, 787
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 11, 758
MluCI AATT 7 cut(s) 278, 446, 575, 722, 822, 900, 987
MlyI GAGTC 1 cut(s) 947
MnlI CCTC 2 cut(s) 641, 974
MseI TTAA 4 cut(s) 509, 662, 725, 747
MslI CAYNNNNRTG 1 cut(s) 520
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 223, 271
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 2 cut(s) 223, 271
MwoI GCNNNNNNNGC 3 cut(s) 30, 695, 704
NdeII GATC 6 cut(s) 54, 179, 312, 325, 344, 787
NlaIII CATG 2 cut(s) 396, 997
NlaIV GGNNCC 2 cut(s) 181, 332
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 441, 950
NspI RCATGY 2 cut(s) 396, 997
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 3 cut(s) 80, 245, 593
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 3 cut(s) 235, 409, 697
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
Psp124BI GAGCTC 1 cut(s) 758
Psp6I CCWGG 2 cut(s) 221, 269
PspGI CCWGG 2 cut(s) 221, 269
PspN4I GGNNCC 2 cut(s) 181, 332
PspPI GGNCC 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 3 cut(s) 195, 432, 514
RsaNI GTAC 3 cut(s) 194, 431, 513
RseI CAYNNNNRTG 1 cut(s) 520
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 4 cut(s) 509, 662, 725, 747
SatI GCNGC 3 cut(s) 234, 408, 696
Sau3AI GATC 6 cut(s) 54, 179, 312, 325, 344, 787
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 2 cut(s) 223, 271
SduI GDGCHC 2 cut(s) 11, 758
SetI ASST 9 cut(s) 224, 235, 456, 501, 697, 747, 758, 947, 966
SexAI ACCWGGT 1 cut(s) 221
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 709
Sse9I AATT 7 cut(s) 278, 446, 575, 722, 822, 900, 987
SsiI CCGC 1 cut(s) 407
SspI AATATT 1 cut(s) 702
SspMI CTAG 3 cut(s) 21, 710, 729
SstI GAGCTC 1 cut(s) 758
StyD4I CCNGG 2 cut(s) 221, 269
StyI CCWWGG 2 cut(s) 183, 402
TaaI ACNGT 2 cut(s) 92, 366
TaqI TCGA 2 cut(s) 311, 758
TasI AATT 7 cut(s) 278, 446, 575, 722, 822, 900, 987
TatI WGTACW 1 cut(s) 512
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 3 cut(s) 80, 245, 593
Tru1I TTAA 4 cut(s) 509, 662, 725, 747
Tru9I TTAA 4 cut(s) 509, 662, 725, 747
TscAI CASTG 3 cut(s) 97, 393, 955
TseFI GTSAC 2 cut(s) 441, 950
TseI GCWGC 2 cut(s) 233, 695
Tsp45I GTSAC 2 cut(s) 441, 950
TspDTI ATGAA 3 cut(s) 90, 144, 556
TspRI CASTG 3 cut(s) 97, 393, 955
Van91I CCANNNNNTGG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 3 cut(s) 278, 575, 987
XceI RCATGY 2 cut(s) 396, 997
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XspI CTAG 3 cut(s) 21, 710, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.