Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Forward (+)

19614263 .. 19617382

Gene Structure 3120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGACTCTGAGTTCTCTACCCTTCTGTGCCGAGAAGATGAAACTTGCTTGATGAATCAAGTGGAAGATGATGATGAAGAATTAGAAAGTTTCTACCCGTTTTTTGTTTCTGAGAATGAAGACGAGTATATTGAGAATTTGGTTCAGAAGGAAAGTTATTGCTTTGGATCCAAAGGTTTTGTACCCTTTACTCATTGCTCTGCCACAAGCTGGTTCAAAGCTGCTCGCTTGGATTCTATTGATTGGATTTTCAATGCATGTTCCTCTTCTAAATCTCTTATTAGTTTTCGATTCATTTGTTGCTGTTGGTTTTTTCTGATCGTTCTTTGTCCAATTCAGATTCTGAAAGTCACGTTATTTACTATTTTGATCCAGGCAAGGGCAGAATTTGGTTTCCGGTTGCAAACAGCATATTTATCTATCACATACTATGATCTGTTTCTTTCAAAGCGATCCATTGATGATGGGAAACTGTGGGCGTTTAGACTATTATCAGTGGCATGTTTATCCTTGGCGGCCAAGATGGAAGAAATCAAAGTACCATCTTTGTCAGAATTTCAGGTTCAAGATTATGATTTTGAAGGCAGAACGATTCAGAGAATGGAGCTAATGGTGTTAAGTACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTTCTTATCTGCATAACTTCGTTTATAAGTTCTGCTGTGAATGTGAATCCAGACCAAAAGGACTAGTCTCTGGTGCTATAAGACTCATCGTGGCAATGACAAAAGAGATTGATTTAATTGATACTCGGCCATCTGTTATTGCAGCAGCTGCAATATTAGCACTAGTTGATGGTCAGTTAACTAGAAAACTTCTGGAGCTTAAGATAAGCCCGATCTCATTCTGGCATTCCCAAGATTATGAACATATATATTCGTGTTATAATCTTATGCAGGAAATTATGGAAAGAAAAGATAAGACACCACCCAAGTTTTCACTCTCTTCCCCTAATGTGTTACCAACAAGCTCAATCGATGTGCTTGAAATCTCAGTGGGCACAAAGAGAAGGCTTTCCTTCAGTGACTCTGATGACCTCAGTTGCCCAACAAAGAAAATTCACTTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

367

Amino Acids

42.17

Weight (kDa)

5.0

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	120 - 214	5.9e-20	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 918
AccB7I	CCANNNNNTGG	1 cut(s)	213
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	4 cut(s)	165, 178, 367, 450
AcoI	YGGCCR	2 cut(s)	519, 785
AcsI	RAATTY	4 cut(s)	139, 389, 557, 1089
AcuI	CTGAAG	1 cut(s)	1036
AfaI	GTAC	3 cut(s)	186, 543, 625
AfiI	CCNNNNNNNGG	2 cut(s)	213, 382
AflII	CTTAAG	1 cut(s)	857
AgsI	TTSAA	7 cut(s)	220, 256, 450, 569, 584, 648, 1019
AhlI	ACTAGT	2 cut(s)	721, 820
AjnI	CCWGG	1 cut(s)	375
AloI	GAACNNNNNNTCC	3 cut(s)	31, 628, 660
AluBI	AGCT	6 cut(s)	213, 224, 610, 806, 856, 1002
AluI	AGCT	6 cut(s)	213, 224, 610, 806, 856, 1002
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	4 cut(s)	165, 178, 367, 450
AlwNI	CAGNNNCTG	2 cut(s)	346, 806
AoxI	GGCC	2 cut(s)	519, 785
ApeKI	GCWGC	4 cut(s)	224, 800, 803, 806
ApoI	RAATTY	4 cut(s)	139, 389, 557, 1089
Asp700I	GAANNNNTTC	1 cut(s)	1045
BaeGI	GKGCMC	1 cut(s)	1034
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	211, 793, 812, 815
BccI	CCATC	5 cut(s)	461, 520, 553, 796, 821
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	730
BcuI	ACTAGT	2 cut(s)	721, 820
BfaI	CTAG	3 cut(s)	722, 821, 840
BfrI	CTTAAG	1 cut(s)	857
BisI	GCNGC	5 cut(s)	225, 519, 801, 804, 807
BlsI	GCNGC	5 cut(s)	226, 520, 802, 805, 808
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	872
Bsa29I	ATCGAT	1 cut(s)	1008
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 382
Bse3DI	GCAATG	2 cut(s)	196, 759
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	213, 382
BseMI	GCAATG	2 cut(s)	196, 759
BseMII	CTCAG	3 cut(s)	105, 1038, 1084
BseSI	GKGCMC	1 cut(s)	1034
BseXI	GCAGC	4 cut(s)	211, 793, 812, 815
BshFI	GGCC	2 cut(s)	521, 787
BshVI	ATCGAT	1 cut(s)	1008
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	213, 382
BsmAI	GTCTC	1 cut(s)	730
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	521, 787
Bsp1286I	GDGCHC	1 cut(s)	1034
Bsp143I	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	521, 787
BspCNI	CTCAG	4 cut(s)	4, 106, 1037, 1083
BspDI	ATCGAT	1 cut(s)	1008
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	4 cut(s)	165, 178, 367, 450
BspTI	CTTAAG	1 cut(s)	857
BsrDI	GCAATG	2 cut(s)	196, 759
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	2 cut(s)	274, 982
BstAFI	CTTAAG	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	12, 114, 1024, 1070
BstKTI	GATC	6 cut(s)	173, 324, 375, 439, 458, 873
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 815
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	264, 507
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	1034
BstV1I	GCAGC	4 cut(s)	211, 793, 812, 815
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	1008
BsuRI	GGCC	2 cut(s)	521, 787
BsuTUI	ATCGAT	1 cut(s)	1008
BtsIMutI	CAGTG	3 cut(s)	504, 1032, 1060
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	2 cut(s)	346, 806
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	3 cut(s)	185, 542, 624
CviAII	CATG	2 cut(s)	261, 504
CviQI	GTAC	3 cut(s)	185, 542, 624
DdeI	CTNAG	4 cut(s)	12, 114, 1024, 1070
DpnI	GATC	6 cut(s)	172, 323, 374, 438, 457, 872
DpnII	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
EaeI	YGGCCR	2 cut(s)	519, 785
Eam1104I	CTCTTC	2 cut(s)	274, 982
EarI	CTCTTC	2 cut(s)	274, 982
Eco130I	CCWWGG	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	264, 507
FatI	CATG	2 cut(s)	260, 503
Fnu4HI	GCNGC	5 cut(s)	225, 519, 801, 804, 807
Fsp4HI	GCNGC	5 cut(s)	225, 519, 801, 804, 807
FspBI	CTAG	3 cut(s)	722, 821, 840
GluI	GCNGC	5 cut(s)	225, 519, 801, 804, 807
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	2 cut(s)	521, 787
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	2 cut(s)	264, 507
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HinfI	GANTC	9 cut(s)	8, 58, 236, 294, 343, 595, 704, 741, 1058
HpaI	GTTAAC	1 cut(s)	837
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188I	TCNGA	9 cut(s)	13, 115, 150, 321, 342, 348, 556, 600, 1063
Hpy188III	TCNNGA	3 cut(s)	569, 708, 851
Hpy8I	GTNNAC	1 cut(s)	837
HpyAV	CCTTC	5 cut(s)	35, 145, 578, 1035, 1060
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	260, 406, 670, 800, 809, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 815
HpyF3I	CTNAG	4 cut(s)	12, 114, 1024, 1070
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	264, 507
KspAI	GTTAAC	1 cut(s)	837
Kzo9I	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
LmnI	GCTCC	2 cut(s)	607, 853
Lsp1109I	GCAGC	4 cut(s)	211, 793, 812, 815
MaeI	CTAG	3 cut(s)	722, 821, 840
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	352, 990, 1055
MalI	GATC	6 cut(s)	172, 323, 374, 438, 457, 872
MboI	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
MboII	GAAGA	7 cut(s)	50, 80, 92, 134, 261, 542, 969
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	1034
MluCI	AATT	8 cut(s)	83, 139, 336, 389, 557, 774, 933, 1089
MlyI	GAGTC	3 cut(s)	2, 735, 1052
MnlI	CCTC	2 cut(s)	277, 1079
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	1045
MseI	TTAA	4 cut(s)	620, 773, 836, 858
MslI	CAYNNNNRTG	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	806, 815
NdeII	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
NlaIII	CATG	2 cut(s)	264, 507
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	2 cut(s)	59, 763
NmuCI	GTSAC	2 cut(s)	352, 1055
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	2 cut(s)	264, 507
PctI	GAATGC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	1045
PfeI	GAWTC	6 cut(s)	58, 236, 294, 343, 595, 704
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	226, 520, 802, 805, 808
PleI	GAGTC	3 cut(s)	2, 735, 1052
PpsI	GAGTC	3 cut(s)	2, 735, 1052
PsiI	TTATAA	2 cut(s)	684, 918
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	172
PstNI	CAGNNNCTG	2 cut(s)	346, 806
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	3 cut(s)	186, 543, 625
RsaNI	GTAC	3 cut(s)	185, 542, 624
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	4 cut(s)	620, 773, 836, 858
SatI	GCNGC	5 cut(s)	225, 519, 801, 804, 807
Sau3AI	GATC	6 cut(s)	170, 321, 372, 436, 455, 870
SchI	GAGTC	3 cut(s)	2, 735, 1052
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	2 cut(s)	721, 820
Sse9I	AATT	8 cut(s)	83, 139, 336, 389, 557, 774, 933, 1089
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	3 cut(s)	722, 821, 840
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	292, 1008
TasI	AATT	8 cut(s)	83, 139, 336, 389, 557, 774, 933, 1089
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	6 cut(s)	58, 236, 294, 343, 595, 704
Tru1I	TTAA	4 cut(s)	620, 773, 836, 858
Tru9I	TTAA	4 cut(s)	620, 773, 836, 858
TscAI	CASTG	3 cut(s)	504, 1032, 1060
TseFI	GTSAC	2 cut(s)	352, 1055
TseI	GCWGC	4 cut(s)	224, 800, 803, 806
Tsp45I	GTSAC	2 cut(s)	352, 1055
TspDTI	ATGAA	6 cut(s)	57, 71, 93, 135, 286, 912
TspRI	CASTG	3 cut(s)	504, 1032, 1060
Van91I	CCANNNNNTGG	1 cut(s)	213
Vha464I	CTTAAG	1 cut(s)	857
XapI	RAATTY	4 cut(s)	139, 389, 557, 1089
XceI	RCATGY	2 cut(s)	264, 507
XmnI	GAANNNNTTC	1 cut(s)	1045
XspI	CTAG	3 cut(s)	722, 821, 840
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.