Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Forward (+)

27771555 .. 27774287

Gene Structure 2733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1295800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACAGGGGCAGTTTTTGGGTTCCAGTTGCAAACAGCTTACTTATCAGTGACTTACTTTGATAGGTTTCTTTCAAAACGATCCATTGATGATGAGAAATTGTGGGCTATTAGATTGTTATCAGTGGCATGTTTATCCTTGGCTGCTAAGATGGAAGAATGCAAAATACCAGCTTTATCAGAGTTTTCGGTTTCGGATTATGATTTTGAAAGCAAAGTCATTCAAAGAATGGAGCTCTTGGTGTTGAATACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTGCTTATCTGCATTACTTCATCAATAAGTTTTGTGCTGATCAAGCAAGGCCAGAAGGACTGTTTTCTAATGCTGTAAAACTGATTATGGCAATGGCAAAAGAAATTGATTTAATGGATACTCGGCCGTCGATTATTGCAGCTGCTGCAGTTTTAGCAGCATTTGATGGTCGGTTAACTAGAAAGATTCTGGATATTAAGATGAATGTGATCTCATTCTTGCAGTCCCAAGATTATGAACATATATATTCCTGCTATAATTTTATGCAGGGAGTGGTGGAAAGAAAAGCTAAGACACCAGCACCCAAGTTTTCAATTTCCCCTTCATCAAGCTCGATGGAAGTGCTTGAGACTTCATCATTTGGCACTAAGAGAAGGCTTACATTCAGTGACTCTGCTGATCAAAGTTGCCCAACCAAGAAGGCTTACGATAGAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

8.19

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	5 - 89	9.7e-21	Cyclin, N-terminal domain
Cyclin_C	PF02984	93 - 197	7.4e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	407
AgsI	TTSAA	6 cut(s)	75, 209, 224, 247, 273, 597
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	6 cut(s)	38, 173, 235, 425, 572, 615
AluI	AGCT	6 cut(s)	38, 173, 235, 425, 572, 615
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	332, 407
ApeKI	GCWGC	5 cut(s)	143, 422, 425, 428, 440
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	130, 412, 415, 434, 452
BccI	CCATC	3 cut(s)	145, 443, 613
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	2 cut(s)	322, 682
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	144, 423, 426, 429, 441
BlsI	GCNGC	5 cut(s)	145, 424, 427, 430, 442
BmiI	GGNNCC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	407
BseXI	GCAGC	5 cut(s)	130, 412, 415, 434, 452
Bsh1285I	CGRYCG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	334, 409
BsiEI	CGRYCG	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	334, 409
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	80, 322, 492, 682
BspANI	GGCC	2 cut(s)	334, 409
BspLI	GGNNCC	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	80, 322, 492, 682
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	147, 573, 651
BstKTI	GATC	4 cut(s)	83, 325, 495, 685
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	4 cut(s)	80, 322, 492, 682
BstMCI	CGRYCG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 428, 437
BstNSI	RCATGY	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	5 cut(s)	130, 412, 415, 434, 452
BstZI	CGGCCG	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	334, 409
BtsIMutI	CAGTG	3 cut(s)	54, 129, 676
CaiI	CAGNNNCTG	1 cut(s)	428
CviAII	CATG	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	147, 573, 651
DpnI	GATC	4 cut(s)	82, 324, 494, 684
DpnII	GATC	4 cut(s)	80, 322, 492, 682
EaeI	YGGCCR	1 cut(s)	407
EagI	CGGCCG	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	132
FaiI	YATR	9 cut(s)	130, 201, 371, 519, 525, 527, 529, 540, 548
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	128
FbaI	TGATCA	2 cut(s)	322, 682
Fnu4HI	GCNGC	5 cut(s)	144, 423, 426, 429, 441
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	144, 423, 426, 429, 441
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	5 cut(s)	144, 423, 426, 429, 441
HaeIII	GGCC	2 cut(s)	334, 409
Hin1II	CATG	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	469, 674
HpaI	GTTAAC	1 cut(s)	459
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	181, 196
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	332, 615, 651, 697
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	31, 162, 295, 422, 431, 505, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 428, 437
HpyF3I	CTNAG	3 cut(s)	147, 573, 651
Hsp92II	CATG	1 cut(s)	132
Ksp22I	TGATCA	2 cut(s)	322, 682
KspAI	GTTAAC	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	80, 322, 492, 682
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	7 cut(s)	38, 183, 348, 458, 536, 547, 594
Lsp1109I	GCAGC	5 cut(s)	130, 412, 415, 434, 452
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	49, 671
MalI	GATC	4 cut(s)	82, 324, 494, 684
MboI	GATC	4 cut(s)	80, 322, 492, 682
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	98, 387, 541, 597
MlyI	GAGTC	1 cut(s)	668
MnlI	CCTC	1 cut(s)	710
MseI	TTAA	3 cut(s)	395, 458, 480
MslI	CAYNNNNRTG	1 cut(s)	256
MspA1I	CMGCKG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	326, 428, 437
NdeII	GATC	4 cut(s)	80, 322, 492, 682
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	1 cut(s)	23
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	49, 671
NspI	RCATGY	1 cut(s)	132
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	145, 424, 427, 430, 442
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	395, 458, 480
SatI	GCNGC	5 cut(s)	144, 423, 426, 429, 441
Sau3AI	GATC	4 cut(s)	80, 322, 492, 682
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	40, 68, 175, 237, 427, 574, 617, 721
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	98, 387, 541, 597
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	413, 617
TasI	AATT	4 cut(s)	98, 387, 541, 597
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	395, 458, 480
Tru9I	TTAA	3 cut(s)	395, 458, 480
TscAI	CASTG	3 cut(s)	54, 129, 676
TseFI	GTSAC	2 cut(s)	49, 671
TseI	GCWGC	5 cut(s)	143, 422, 425, 428, 440
Tsp45I	GTSAC	2 cut(s)	49, 671
TspDTI	ATGAA	5 cut(s)	292, 500, 534, 597, 627
TspRI	CASTG	3 cut(s)	54, 129, 676
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.