Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Forward (+)

16723288 .. 16724642

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1184500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGGACTCTGCAGAAACTTCATTCTCTCTCTCCACCGTCCTCTGCCAAGAAGATGAAACTTGTCTTAACCAATTGGAAGACGAATCTAAAACTTCTGTAGAATCAAACCCATGTTTTCTTTTTGATAACGACGATGAATATGTCGAAAACTTGATTCAGAAAGAAGCTCATTGCTTTGAATCCAAAGGGTTCAAGGATTGCCCGGTCTCTGGCATGAGCTGGTTGAAAACAACTCGATTGGATGCCATTGATTGGATTTTCAATGCATGGGCAGTTTTTGGGTTCCAGTTGCAAACAGCTTACTTATCAGTGACTTACTTTGATGGGTTTCTTTCAAAACGATCCATTGATGATGAGAAATTGTGGGCTATTAGATTGTTATCAGTGGCATGTTTATCCTTGGCTGCTAAGATGGAAGAATGCAAAATACCAGCTTTATCAGATTATTCGGTTTCGGATTACGATTACGATTTTGAAAGCAAAGTGATTCAAAGAATGGAGCTTTTGGTGCTGAATACATTGGAATGGAAGTTGGGTACAATCACTCCTTTTGATTATCTGCACTACTTCATCAATAAGTTTTGTGCTGATCAATTAAGACCAAAAGAACTAGCTTCTAATGCTATCAGACTAGTTGTGGCAATGGCAAAAGAAATTGATTTGATGGATACTCGGCCGTCGATTATTGCAGCTGCTGCAGTTTTAGCAGCATCAGATGGTCAATTAAGCAGAAAGATTCTAGAGCTTAAGATGAATGTGATCTCATTCTTGCAGTCCCAAGATTATGAATACATATATTCCTGCTATGATTTTATGCAGGAAATAGTGGAAAGAAAAGATAAGACACCAGCTCCCAAGTTTTCAAATTCCCCTCTATCAATTCATTCATACTCAATGGAAGTGCTTGAAACTTCACCAATTGGCACTAAGAGACGGCTTACATTCGGTGACTCTTCTGATCAAAGTTACCCAACCAAGAAAATTCACCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

333

Amino Acids

37.96

Weight (kDa)

4.76

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	50 - 179	8.3e-23	Cyclin, N-terminal domain
Cyclin_C	PF02984	182 - 283	4.8e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	2 cut(s)	868, 984
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	212, 255
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	9 cut(s)	182, 196, 229, 265, 339, 479, 494, 867, 911
AhlI	ACTAGT	1 cut(s)	634
AluBI	AGCT	9 cut(s)	170, 222, 302, 437, 505, 617, 695, 748, 854
AluI	AGCT	9 cut(s)	170, 222, 302, 437, 505, 617, 695, 748, 854
Alw26I	GTCTC	2 cut(s)	214, 928
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	5 cut(s)	407, 692, 695, 698, 710
ApoI	RAATTY	2 cut(s)	868, 984
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	909, 962, 980
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	394, 682, 685, 704, 722
BccI	CCATC	4 cut(s)	320, 409, 661, 713
BceAI	ACGGC	2 cut(s)	664, 953
BciVI	GTATCC	1 cut(s)	664
BclI	TGATCA	2 cut(s)	592, 961
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	214, 928
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	3 cut(s)	614, 635, 743
BfmI	CTRYAG	3 cut(s)	12, 99, 699
BfrI	CTTAAG	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	5 cut(s)	408, 693, 696, 699, 711
BlsI	GCNGC	5 cut(s)	409, 694, 697, 700, 712
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	235, 722
BpiI	GAAGAC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	4 cut(s)	532, 562, 838, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 255
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	172, 651
Bse8I	GATNNNNATC	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	2 cut(s)	212, 255
BseMI	GCAATG	2 cut(s)	172, 651
BseNI	ACTGG	1 cut(s)	289
BseX3I	CGGCCG	1 cut(s)	677
BseXI	GCAGC	5 cut(s)	394, 682, 685, 704, 722
BsgI	GTGCAG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	679
BsiEI	CGRYCG	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	20, 763
BslI	CCNNNNNNNGG	2 cut(s)	212, 255
BsmAI	GTCTC	2 cut(s)	214, 928
BsmBI	CGTCTC	1 cut(s)	928
BsmFI	GGGAC	2 cut(s)	20, 763
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	679
Bso31I	GGTCTC	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	344, 592, 762, 961
BspANI	GGCC	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	2 cut(s)	16, 703
BspPI	GGATC	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	172, 651
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	344, 592, 762, 961
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	961
BstAFI	CTTAAG	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstDEI	CTNAG	2 cut(s)	411, 930
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	347, 595, 765, 964
BstMAI	GTCTC	2 cut(s)	214, 928
BstMBI	GATC	4 cut(s)	344, 592, 762, 961
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	4 cut(s)	511, 623, 698, 707
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	3 cut(s)	12, 99, 699
BstV1I	GCAGC	5 cut(s)	394, 682, 685, 704, 722
BstV2I	GAAGAC	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	677
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	318, 393
CaiI	CAGNNNCTG	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	4 cut(s)	114, 217, 270, 393
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	411, 930
DpnI	GATC	4 cut(s)	346, 594, 764, 963
DpnII	GATC	4 cut(s)	344, 592, 762, 961
EaeI	YGGCCR	1 cut(s)	677
EagI	CGGCCG	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	961
EarI	CTCTTC	1 cut(s)	961
EclXI	CGGCCG	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	214
Eco52I	CGGCCG	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	928
FaeI	CATG	4 cut(s)	117, 220, 273, 396
FaqI	GGGAC	2 cut(s)	20, 763
FatI	CATG	4 cut(s)	113, 216, 269, 392
FbaI	TGATCA	2 cut(s)	592, 961
Fnu4HI	GCNGC	5 cut(s)	408, 693, 696, 699, 711
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	408, 693, 696, 699, 711
FspBI	CTAG	3 cut(s)	614, 635, 743
GluI	GCNGC	5 cut(s)	408, 693, 696, 699, 711
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	4 cut(s)	117, 220, 273, 396
HinfI	GANTC	8 cut(s)	8, 86, 104, 157, 182, 490, 739, 953
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	3 cut(s)	909, 962, 980
Hpy188I	TCNGA	6 cut(s)	162, 445, 460, 632, 718, 961
Hpy188III	TCNNGA	1 cut(s)	743
Hpy99I	CGWCG	2 cut(s)	137, 685
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	9 cut(s)	14, 269, 295, 426, 565, 692, 701, 775, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	511, 623, 698, 707
HpyF3I	CTNAG	2 cut(s)	411, 930
Hsp92II	CATG	4 cut(s)	117, 220, 273, 396
Ksp22I	TGATCA	2 cut(s)	592, 961
Kzo9I	GATC	4 cut(s)	344, 592, 762, 961
LmnI	GCTCC	2 cut(s)	502, 859
LpnPI	CCDG	8 cut(s)	198, 208, 219, 302, 447, 806, 817, 864
Lsp1109I	GCAGC	5 cut(s)	394, 682, 685, 704, 722
LweI	GCATC	2 cut(s)	235, 722
MaeI	CTAG	3 cut(s)	614, 635, 743
MaeIII	GTNAC	3 cut(s)	313, 950, 968
MalI	GATC	4 cut(s)	346, 594, 764, 963
MboI	GATC	4 cut(s)	344, 592, 762, 961
MboII	GAAGA	4 cut(s)	65, 92, 431, 948
MfeI	CAATTG	2 cut(s)	74, 921
MluCI	AATT	9 cut(s)	74, 362, 596, 657, 725, 868, 882, 921, 984
MlyI	GAGTC	2 cut(s)	2, 947
MnlI	CCTC	2 cut(s)	53, 885
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	4 cut(s)	69, 599, 728, 750
MslI	CAYNNNNRTG	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	2 cut(s)	74, 921
Mva1269I	GAATGC	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	511, 623, 698, 707
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	4 cut(s)	344, 592, 762, 961
NlaIII	CATG	4 cut(s)	117, 220, 273, 396
NlaIV	GGNNCC	1 cut(s)	287
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	313, 950
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	396
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	6 cut(s)	86, 104, 157, 182, 490, 739
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	409, 694, 697, 700, 712
PleI	GAGTC	2 cut(s)	2, 947
PpsI	GAGTC	2 cut(s)	2, 947
PspN4I	GGNNCC	1 cut(s)	287
PstI	CTGCAG	2 cut(s)	16, 703
PstNI	CAGNNNCTG	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	4 cut(s)	69, 599, 728, 750
SatI	GCNGC	5 cut(s)	408, 693, 696, 699, 711
Sau3AI	GATC	4 cut(s)	344, 592, 762, 961
SchI	GAGTC	2 cut(s)	2, 947
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	9 cut(s)	172, 224, 304, 439, 507, 619, 697, 750, 856
SfaNI	GCATC	2 cut(s)	235, 722
SfcI	CTRYAG	3 cut(s)	12, 99, 699
SmiMI	CAYNNNNRTG	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	9 cut(s)	74, 362, 596, 657, 725, 868, 882, 921, 984
SspMI	CTAG	3 cut(s)	614, 635, 743
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	147, 238, 683
TasI	AATT	9 cut(s)	74, 362, 596, 657, 725, 868, 882, 921, 984
TfiI	GAWTC	6 cut(s)	86, 104, 157, 182, 490, 739
Tru1I	TTAA	4 cut(s)	69, 599, 728, 750
Tru9I	TTAA	4 cut(s)	69, 599, 728, 750
TscAI	CASTG	2 cut(s)	318, 393
TseFI	GTSAC	2 cut(s)	313, 950
TseI	GCWGC	5 cut(s)	407, 692, 695, 698, 710
Tsp45I	GTSAC	2 cut(s)	313, 950
TspDTI	ATGAA	8 cut(s)	12, 72, 153, 562, 770, 804, 875, 879
TspRI	CASTG	2 cut(s)	318, 393
Van91I	CCANNNNNTGG	1 cut(s)	255
Vha464I	CTTAAG	1 cut(s)	749
XapI	RAATTY	2 cut(s)	868, 984
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	3 cut(s)	614, 635, 743
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.