Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22714167 .. 22716593

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G222000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGGGACTCTTCAGACACTTCTTCGTTTTCTCTCTCCAGCCTCCTCTGCCATGAAGATCAATCTTGCTTAAATCAATTGGAATTTGAATCAAACACTTGCATAGATTCAGACCCATGTTTTGTTTATGTGGATGAAGATGAGTATGTTGAGAACTTGGTCCGCAGAGAAGCTCGTTGCTTTGGATCCAAGGGCTTTGTACCCTTTACTGATTGCTCTGCCTCTGACATATGCTGGTTGAAAACTGCTCGCTTGGATTCGATTGAATGGATTTTCAATACAGGAGGAAATTTTGGGTTCCAATTTCAAACAGTTTATTTATCTGTCACTTACTTTGATGGGTTTCTTTCAAAGCGATCCATTGATGATGGGAAATTGTGGGCTATTCGACTATTATCAGTGGCATGTTTATCCTTGGCAGCTAAGATGGAAGAATGTAAAGTGCCAGCTTTATCAGAGTTCCAAGTCCAAGATTATAACTTTGAAAGCAAGGTGATTCAGAGAATGGAGCTACTGGTCTTGAACACATTGGAATGGAAATTGGGTTCAATCACTCCTTTTGCTTATCTGCATTACTTTATCAATAAATTCTGTGCTGAATCTAGACCCAAAGGACTATTCTCTGGTGCTATAAGACTCATTGTAGCAATGGCAAAAGAGATTGATTTAATGGATACTCGGCCGTCTATCATCGCAGCAGCCGCAGTTTTAGCAGCATCTGATGGTCAGTTAACTAGAAAAATGCTGGAGCTTAAGATGAGTGTGGTCTCATTCTTGCAGTCCCAAGAAAATTATGAACATATATTTTCCTGTTATAATCATATGCAGGAAATGGTGGAAAGAAAAGATAAGACACCACCCAAGTTTTCAATTTCCCCTAGCGTGTTAGCAATCCATTCAAGCTCAATGGATGTGCTTGAAAATTCAGTTGGGACTAAGAGAAGGCTTACCTTCAGTGACTCTGATCACAGTTGTCCAACAAAGAAAAATCACAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

334

Amino Acids

37.76

Weight (kDa)

5.47

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	477, 816
AciI	CCGC	2 cut(s)	163, 702
AclWI	GGATC	3 cut(s)	180, 193, 351
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	4 cut(s)	83, 289, 587, 922
AcuI	CTGAAG	1 cut(s)	937
AfaI	GTAC	1 cut(s)	201
AflII	CTTAAG	1 cut(s)	752
AjuI	GAANNNNNNNTTGG	4 cut(s)	602, 634, 912, 944
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
AluBI	AGCT	6 cut(s)	173, 422, 449, 511, 751, 903
AluI	AGCT	6 cut(s)	173, 422, 449, 511, 751, 903
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	3 cut(s)	180, 193, 351
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	680, 995
ApeKI	GCWGC	4 cut(s)	419, 695, 698, 713
ApoI	RAATTY	4 cut(s)	83, 289, 587, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	431, 707, 710, 725
BccI	CCATC	4 cut(s)	332, 362, 421, 716
BceAI	ACGGC	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	1 cut(s)	772
BfaI	CTAG	3 cut(s)	603, 735, 879
BfrI	CTTAAG	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	5 cut(s)	420, 696, 699, 702, 714
BlsI	GCNGC	5 cut(s)	421, 697, 700, 703, 715
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	187, 299
BmsI	GCATC	1 cut(s)	725
BpmI	CTGGAG	2 cut(s)	22, 767
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	2 cut(s)	189, 414
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	189, 414
BseGI	GGATG	2 cut(s)	139, 916
BseMI	GCAATG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	680
BseXI	GCAGC	4 cut(s)	431, 707, 710, 725
Bsh1285I	CGRYCG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	682, 997
BsiEI	CGRYCG	1 cut(s)	683
BslFI	GGGAC	3 cut(s)	20, 766, 946
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	3 cut(s)	20, 766, 946
BsnI	GGCC	2 cut(s)	682, 997
Bso31I	GGTCTC	1 cut(s)	772
Bsp143I	GATC	4 cut(s)	58, 185, 356, 964
BspACI	CCGC	2 cut(s)	163, 702
BspANI	GGCC	2 cut(s)	682, 997
BspLI	GGNNCC	2 cut(s)	187, 299
BspPI	GGATC	3 cut(s)	180, 193, 351
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	189, 414
BssMI	GATC	4 cut(s)	58, 185, 356, 964
BssT1I	CCWWGG	2 cut(s)	189, 414
Bst4CI	ACNGT	2 cut(s)	313, 971
Bst6I	CTCTTC	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	250, 447
BstDEI	CTNAG	2 cut(s)	423, 936
BstF5I	GGATG	2 cut(s)	139, 916
BstKTI	GATC	4 cut(s)	61, 188, 359, 967
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	4 cut(s)	58, 185, 356, 964
BstMCI	CGRYCG	1 cut(s)	683
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 701, 710
BstNSI	RCATGY	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	431, 707, 710, 725
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZI	CGGCCG	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	682, 997
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	139, 916
BtsIMutI	CAGTG	2 cut(s)	405, 961
Cac8I	GCNNGC	2 cut(s)	250, 447
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	3 cut(s)	53, 117, 405
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	423, 936
DpnI	GATC	4 cut(s)	60, 187, 358, 966
DpnII	GATC	4 cut(s)	58, 185, 356, 964
EaeI	YGGCCR	1 cut(s)	680
EagI	CGGCCG	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	189, 414
Eco31I	GGTCTC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	937
EcoT14I	CCWWGG	2 cut(s)	189, 414
ErhI	CCWWGG	2 cut(s)	189, 414
FaeI	CATG	3 cut(s)	56, 120, 408
FaqI	GGGAC	3 cut(s)	20, 766, 946
FatI	CATG	3 cut(s)	52, 116, 404
FauNDI	CATATG	2 cut(s)	230, 822
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	5 cut(s)	420, 696, 699, 702, 714
FokI	GGATG	2 cut(s)	146, 923
Fsp4HI	GCNGC	5 cut(s)	420, 696, 699, 702, 714
FspBI	CTAG	3 cut(s)	603, 735, 879
GluI	GCNGC	5 cut(s)	420, 696, 699, 702, 714
GsuI	CTGGAG	2 cut(s)	22, 767
HaeIII	GGCC	2 cut(s)	682, 997
Hin1II	CATG	3 cut(s)	56, 120, 408
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	8 cut(s)	8, 89, 107, 257, 496, 599, 636, 959
HpaI	GTTAAC	1 cut(s)	732
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	7 cut(s)	16, 112, 226, 457, 501, 721, 964
Hpy188III	TCNNGA	2 cut(s)	520, 603
Hpy8I	GTNNAC	1 cut(s)	732
HpyAV	CCTTC	2 cut(s)	936, 961
HpyCH4III	ACNGT	2 cut(s)	313, 971
HpyCH4V	TGCA	4 cut(s)	102, 571, 778, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 701, 710
HpyF3I	CTNAG	2 cut(s)	423, 936
Hsp92II	CATG	3 cut(s)	56, 120, 408
Ksp22I	TGATCA	1 cut(s)	964
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	58, 185, 356, 964
LmnI	GCTCC	2 cut(s)	508, 748
Lsp1109I	GCAGC	4 cut(s)	431, 707, 710, 725
LweI	GCATC	1 cut(s)	725
MaeI	CTAG	3 cut(s)	603, 735, 879
MaeIII	GTNAC	2 cut(s)	325, 956
MalI	GATC	4 cut(s)	60, 187, 358, 966
MboI	GATC	4 cut(s)	58, 185, 356, 964
MboII	GAAGA	5 cut(s)	3, 15, 68, 149, 443
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	185
MlyI	GAGTC	3 cut(s)	2, 630, 953
MmeI	TCCRAC	1 cut(s)	1001
MnlI	CCTC	4 cut(s)	53, 56, 232, 278
MseI	TTAA	4 cut(s)	71, 668, 731, 753
MslI	CAYNNNNRTG	1 cut(s)	532
MspCI	CTTAAG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	48, 701, 710
NdeI	CATATG	2 cut(s)	230, 822
NdeII	GATC	4 cut(s)	58, 185, 356, 964
NlaIII	CATG	3 cut(s)	56, 120, 408
NlaIV	GGNNCC	2 cut(s)	187, 299
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	325, 956
NspI	RCATGY	1 cut(s)	408
PfeI	GAWTC	5 cut(s)	89, 107, 257, 496, 599
PkrI	GCNGC	5 cut(s)	421, 697, 700, 703, 715
PleI	GAGTC	3 cut(s)	2, 630, 953
PpsI	GAGTC	3 cut(s)	2, 630, 953
PsiI	TTATAA	2 cut(s)	477, 816
PspN4I	GGNNCC	2 cut(s)	187, 299
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	532
SaqAI	TTAA	4 cut(s)	71, 668, 731, 753
SatI	GCNGC	5 cut(s)	420, 696, 699, 702, 714
Sau3AI	GATC	4 cut(s)	58, 185, 356, 964
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	3 cut(s)	2, 630, 953
SetI	ASST	8 cut(s)	175, 424, 451, 495, 513, 753, 905, 953
SfaNI	GCATC	1 cut(s)	725
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SsiI	CCGC	2 cut(s)	163, 702
SspMI	CTAG	3 cut(s)	603, 735, 879
StyI	CCWWGG	2 cut(s)	189, 414
TaaI	ACNGT	2 cut(s)	313, 971
TaqI	TCGA	2 cut(s)	260, 388
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	5 cut(s)	89, 107, 257, 496, 599
Tru1I	TTAA	4 cut(s)	71, 668, 731, 753
Tru9I	TTAA	4 cut(s)	71, 668, 731, 753
TscAI	CASTG	2 cut(s)	405, 961
TseFI	GTSAC	2 cut(s)	325, 956
TseI	GCWGC	4 cut(s)	419, 695, 698, 713
Tsp45I	GTSAC	2 cut(s)	325, 956
TspDTI	ATGAA	3 cut(s)	69, 150, 810
TspRI	CASTG	2 cut(s)	405, 961
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	4 cut(s)	83, 289, 587, 922
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	1 cut(s)	408
XspI	CTAG	3 cut(s)	603, 735, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.