Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006215.1

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Reverse (-)

18028 .. 19615

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006215.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggaggactctgagttctctacccttctgtgccgagaagatgagacttgcttgatgaatcaagtggaagatgatgatgatgaagaattagaaagtttctacccgttttttgtttctgagaatgaagacgagtatattgagaatttggttcagaaggaaagttattgctttggatccaaaggctttgtgccctttactcattgctctgccacaagctggttcaaagctgctcgcttggattctattgattggattttcaatgcaagggcagaatttggtttccggttgcaaacagcatatttatctatcacatactatgatctgtttctttcaaagcgatccattgatgatgggaaactgtgggcgtttagactattatccgtggcatgtttatccttggcggccaagatggaagaaatcaaagtaccatctttgtcagaatttcaggttcaagattatgattttgaaggcagaacgattcagagaatggagctaatggtgttaagtacattggaatggaagttgggttcaatcactcctttttcttatctgcataacttcgtttataagttctgctgtgaatgtgaatccagaccaaaaggactagtctctggtgctataagactcatcgtggcaatgacaaaagagattgatttaatagatactcggccatctgttattgcagcagctgcaatattggcactagttgatggtcagttaactagaaaacttctggagcttaagataagctcgatctcattctggcattcccaagattatgaacatatatattcgtgttataatcttatgcagaaaattatggaaagaaaagataagacaccacccaagttttcactctcttcccctaatgtgttaccaacacaatcaagctcaatcgatgtgcttgaaatctcagtgggcacaaagagaaggcttaccttcagtgactctgatgacctcagttgcccaacaaagaaacttcacatgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

330

Amino Acids

37.94

Weight (kDa)

4.88

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 801
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	3 cut(s)	168, 181, 333
AcoI	YGGCCR	2 cut(s)	402, 668
AcsI	RAATTY	3 cut(s)	142, 272, 440
AcuI	CTGAAG	1 cut(s)	925
AfaI	GTAC	2 cut(s)	426, 508
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	223, 259, 333, 452, 467, 531, 908
AhlI	ACTAGT	2 cut(s)	604, 703
AloI	GAACNNNNNNTCC	3 cut(s)	31, 511, 543
AluBI	AGCT	7 cut(s)	216, 227, 493, 689, 739, 750, 891
AluI	AGCT	7 cut(s)	216, 227, 493, 689, 739, 750, 891
Alw26I	GTCTC	2 cut(s)	38, 613
AlwI	GGATC	3 cut(s)	168, 181, 333
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	2 cut(s)	402, 668
ApeKI	GCWGC	4 cut(s)	227, 683, 686, 689
ApoI	RAATTY	3 cut(s)	142, 272, 440
BaeGI	GKGCMC	2 cut(s)	192, 923
BamHI	GGATCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	214, 676, 695, 698
BccI	CCATC	5 cut(s)	344, 403, 436, 679, 704
BcoDI	GTCTC	2 cut(s)	38, 613
BcuI	ACTAGT	2 cut(s)	604, 703
BfaI	CTAG	3 cut(s)	605, 704, 723
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
BlsI	GCNGC	5 cut(s)	229, 403, 685, 688, 691
BmiI	GGNNCC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	755
Bsa29I	ATCGAT	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	381, 396
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	199, 642
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	2 cut(s)	381, 396
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	199, 642
BseMII	CTCAG	3 cut(s)	108, 927, 973
BseSI	GKGCMC	2 cut(s)	192, 923
BseXI	GCAGC	4 cut(s)	214, 676, 695, 698
BshFI	GGCC	2 cut(s)	404, 670
BshVI	ATCGAT	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	38, 613
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	404, 670
Bsp1286I	GDGCHC	2 cut(s)	192, 923
Bsp143I	GATC	4 cut(s)	173, 319, 338, 753
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	404, 670
BspCNI	CTCAG	4 cut(s)	4, 109, 926, 972
BspDI	ATCGAT	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	3 cut(s)	168, 181, 333
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	199, 642
BssECI	CCNNGG	2 cut(s)	381, 396
BssMI	GATC	4 cut(s)	173, 319, 338, 753
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	865
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	4 cut(s)	12, 117, 913, 959
BstDSI	CCRYGG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	176, 322, 341, 756
BstMAI	GTCTC	2 cut(s)	38, 613
BstMBI	GATC	4 cut(s)	173, 319, 338, 753
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 698
BstNSI	RCATGY	2 cut(s)	390, 988
BstSLI	GKGCMC	2 cut(s)	192, 923
BstV1I	GCAGC	4 cut(s)	214, 676, 695, 698
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	404, 670
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	921, 949
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	425, 507
CviAII	CATG	2 cut(s)	387, 985
CviQI	GTAC	2 cut(s)	425, 507
DdeI	CTNAG	4 cut(s)	12, 117, 913, 959
DpnI	GATC	4 cut(s)	175, 321, 340, 755
DpnII	GATC	4 cut(s)	173, 319, 338, 753
EaeI	YGGCCR	2 cut(s)	402, 668
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	390, 988
FatI	CATG	2 cut(s)	386, 984
Fnu4HI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
Fsp4HI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
FspBI	CTAG	3 cut(s)	605, 704, 723
GluI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	2 cut(s)	404, 670
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	390, 988
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	7 cut(s)	8, 58, 239, 478, 587, 624, 947
HpaI	GTTAAC	1 cut(s)	720
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	6 cut(s)	13, 118, 153, 439, 483, 952
Hpy188III	TCNNGA	3 cut(s)	452, 591, 734
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	5 cut(s)	35, 148, 461, 924, 949
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	263, 289, 553, 683, 692, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 698
HpyF3I	CTNAG	4 cut(s)	12, 117, 913, 959
Hsp92II	CATG	2 cut(s)	390, 988
KspAI	GTTAAC	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	173, 319, 338, 753
LmnI	GCTCC	2 cut(s)	490, 736
LpnPI	CCDG	7 cut(s)	202, 296, 431, 597, 604, 719, 748
Lsp1109I	GCAGC	4 cut(s)	214, 676, 695, 698
MaeI	CTAG	3 cut(s)	605, 704, 723
MaeIII	GTNAC	2 cut(s)	873, 944
MalI	GATC	4 cut(s)	175, 321, 340, 755
MboI	GATC	4 cut(s)	173, 319, 338, 753
MboII	GAAGA	6 cut(s)	50, 80, 95, 137, 425, 852
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	192, 923
MluCI	AATT	5 cut(s)	86, 142, 272, 440, 816
MlyI	GAGTC	3 cut(s)	2, 618, 941
MnlI	CCTC	1 cut(s)	968
MseI	TTAA	4 cut(s)	503, 656, 719, 741
MslI	CAYNNNNRTG	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	766
MwoI	GCNNNNNNNGC	2 cut(s)	689, 698
NdeII	GATC	4 cut(s)	173, 319, 338, 753
NlaIII	CATG	2 cut(s)	390, 988
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	2 cut(s)	59, 646
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	2 cut(s)	390, 988
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	4 cut(s)	58, 239, 478, 587
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	229, 403, 685, 688, 691
PleI	GAGTC	3 cut(s)	2, 618, 941
PpsI	GAGTC	3 cut(s)	2, 618, 941
PsiI	TTATAA	2 cut(s)	567, 801
PspN4I	GGNNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	426, 508
RsaNI	GTAC	2 cut(s)	425, 507
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	503, 656, 719, 741
SatI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
Sau3AI	GATC	4 cut(s)	173, 319, 338, 753
SchI	GAGTC	3 cut(s)	2, 618, 941
SduI	GDGCHC	2 cut(s)	192, 923
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SpeI	ACTAGT	2 cut(s)	604, 703
Sse9I	AATT	5 cut(s)	86, 142, 272, 440, 816
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	3 cut(s)	605, 704, 723
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	752, 897
TasI	AATT	5 cut(s)	86, 142, 272, 440, 816
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	4 cut(s)	58, 239, 478, 587
Tru1I	TTAA	4 cut(s)	503, 656, 719, 741
Tru9I	TTAA	4 cut(s)	503, 656, 719, 741
TscAI	CASTG	2 cut(s)	921, 949
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	227, 683, 686, 689
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	4 cut(s)	71, 96, 138, 795
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	921, 949
Van91I	CCANNNNNTGG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	3 cut(s)	142, 272, 440
XceI	RCATGY	2 cut(s)	390, 988
XspI	CTAG	3 cut(s)	605, 704, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.