RchiOBHm_Chr2g0107771

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010963
Physical Location & Seq
Forward (+)
19370235 .. 19372572
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48177

Sequence Viewer

Length: 984 bp
ATGGAGGACTCTGAGTTCTCTACCCTTCTGTGCCGAGAAGATGAAACTTGCTTGATGAATCAAGTGGAAGATGATGATGAAGAATTAGAAAGTTTCTACCCGTTTTTTGTTTCTGAGAATGAAGACGAGTATATTGAGAATTTGGTTCAGAAGGAAAGTTATTGCTTTGGATCCAAAGGTTTTGTACCCTTTACTCATTGCTCTGCCACAAGCTGGTTCAAAGCTGCTCGCTTGGATTCTATTGATTGGATTTTCAATGCAAGGGCAGAATTTGGTTTCCGGTTGCAAACAGCATATTTATCTATCACATACTATGATCTGTTTCTTTCAAAGCGATCCATTGATGATGGGAAACTGTGGGCGTTTAGACTATTATCAGTGGCATGTTTATCCTTGGCGGCCAAGATGGAAGAAATCAAAGTACCATCTTTGTCAGAATTTCAGGTTCAAGATTATGATTTTGAAGGCAGAACGATTCAGAGAATGGAGCTAATGGTGTTAAGTACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTTCTTATCTGCATAACTTCGTTTATAAGTTCTGCTGTGAATGTGAATCCAGACCAAAAGGACTAGTCTCTGGTGCTATAAGACTCATCGTGGCAATGACAAAAGAGATTGATTTAATTGATACTCGGCCATCTGTTATTGCAGCAGCTGCAATATTAGCACTAGTTGATGGTCAGTTAACTAGAAAACTTCTGGAGCTTAAGATAAGCCCGATCTCATTCTGGCATTCCCAAGATTATGAACATATATATTCGTGTTATAATCTTATGCAGGAAATTATGGAAAGAAAAGATAAGACACCACCCAAGTTTTCACTCTCTTCCCCTAATGTGTTACCAACAAGCTCAATCGATGTGCTTGAAATCTCAGTGGGCACAAAGAGAAGGCTTTCCTTCAGTGACTCTGATGACCTCAGTTGCCCAACAAAGAAAATTCACTTGCCATAG

Protein Analysis

327

Amino Acids

37.58

Weight (kDa)

4.83

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 74 - 174 9.1e-23 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37630 AT4G37630 AT4G37630
fragaria_vesca FvH4_1g17530 FvH4_1g17530
malus_domestica MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis pycom15g25870
rosa_chinensis RchiOBHm_Chr2g0107771
rosa_laevigata RLG00000017614
rosa_multiflora Rmu_sc0006215.1_g000005
rosa_roxburghii Rroxscaffold_2G00135970
rosa_rugosa Rorug02G0147400
rosa_samantha Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana Rw2G015580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 564, 798
AccB7I CCANNNNNTGG 1 cut(s) 213
AciI CCGC 1 cut(s) 398
AclWI GGATC 3 cut(s) 165, 178, 330
AcoI YGGCCR 2 cut(s) 399, 665
AcsI RAATTY 4 cut(s) 139, 269, 437, 969
AcuI CTGAAG 1 cut(s) 916
AfaI GTAC 3 cut(s) 186, 423, 505
AfiI CCNNNNNNNGG 1 cut(s) 213
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 7 cut(s) 220, 256, 330, 449, 464, 528, 899
AhlI ACTAGT 2 cut(s) 601, 700
AloI GAACNNNNNNTCC 3 cut(s) 31, 508, 540
AluBI AGCT 6 cut(s) 213, 224, 490, 686, 736, 882
AluI AGCT 6 cut(s) 213, 224, 490, 686, 736, 882
Alw26I GTCTC 1 cut(s) 610
AlwI GGATC 3 cut(s) 165, 178, 330
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 2 cut(s) 399, 665
ApeKI GCWGC 4 cut(s) 224, 680, 683, 686
ApoI RAATTY 4 cut(s) 139, 269, 437, 969
Asp700I GAANNNNTTC 1 cut(s) 925
BaeGI GKGCMC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 211, 673, 692, 695
BccI CCATC 5 cut(s) 341, 400, 433, 676, 701
BcoDI GTCTC 1 cut(s) 610
BcuI ACTAGT 2 cut(s) 601, 700
BfaI CTAG 3 cut(s) 602, 701, 720
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 5 cut(s) 225, 399, 681, 684, 687
BlsI GCNGC 5 cut(s) 226, 400, 682, 685, 688
BmiI GGNNCC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 888
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse3DI GCAATG 2 cut(s) 196, 639
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 2 cut(s) 196, 639
BseMII CTCAG 3 cut(s) 105, 918, 964
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 4 cut(s) 211, 673, 692, 695
BshFI GGCC 2 cut(s) 401, 667
BshVI ATCGAT 1 cut(s) 888
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 401, 667
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 4 cut(s) 170, 316, 335, 750
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 401, 667
BspCNI CTCAG 4 cut(s) 4, 106, 917, 963
BspDI ATCGAT 1 cut(s) 888
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 3 cut(s) 165, 178, 330
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 196, 639
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 4 cut(s) 170, 316, 335, 750
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 862
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 4 cut(s) 12, 114, 904, 950
BstKTI GATC 4 cut(s) 173, 319, 338, 753
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 4 cut(s) 170, 316, 335, 750
BstMWI GCNNNNNNNGC 2 cut(s) 686, 695
BstNSI RCATGY 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 4 cut(s) 211, 673, 692, 695
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 888
BsuRI GGCC 2 cut(s) 401, 667
BsuTUI ATCGAT 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 384, 912, 940
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 686
ClaI ATCGAT 1 cut(s) 888
Csp6I GTAC 3 cut(s) 185, 422, 504
CviAII CATG 1 cut(s) 384
CviQI GTAC 3 cut(s) 185, 422, 504
DdeI CTNAG 4 cut(s) 12, 114, 904, 950
DpnI GATC 4 cut(s) 172, 318, 337, 752
DpnII GATC 4 cut(s) 170, 316, 335, 750
EaeI YGGCCR 2 cut(s) 399, 665
Eam1104I CTCTTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 1 cut(s) 387
FatI CATG 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 225, 399, 681, 684, 687
Fsp4HI GCNGC 5 cut(s) 225, 399, 681, 684, 687
FspBI CTAG 3 cut(s) 602, 701, 720
GluI GCNGC 5 cut(s) 225, 399, 681, 684, 687
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 401, 667
HapII CCGG 1 cut(s) 280
Hin1II CATG 1 cut(s) 387
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HinfI GANTC 7 cut(s) 8, 58, 236, 475, 584, 621, 938
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 6 cut(s) 13, 115, 150, 436, 480, 943
Hpy188III TCNNGA 3 cut(s) 449, 588, 731
Hpy8I GTNNAC 1 cut(s) 717
HpyAV CCTTC 5 cut(s) 35, 145, 458, 915, 940
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 6 cut(s) 260, 286, 550, 680, 689, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 695
HpyF3I CTNAG 4 cut(s) 12, 114, 904, 950
Hsp92II CATG 1 cut(s) 387
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 4 cut(s) 170, 316, 335, 750
LmnI GCTCC 2 cut(s) 487, 733
LpnPI CCDG 8 cut(s) 199, 293, 428, 594, 601, 716, 745, 794
Lsp1109I GCAGC 4 cut(s) 211, 673, 692, 695
MaeI CTAG 3 cut(s) 602, 701, 720
MaeIII GTNAC 2 cut(s) 870, 935
MalI GATC 4 cut(s) 172, 318, 337, 752
MboI GATC 4 cut(s) 170, 316, 335, 750
MboII GAAGA 6 cut(s) 50, 80, 92, 134, 422, 849
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 7 cut(s) 83, 139, 269, 437, 654, 813, 969
MlyI GAGTC 3 cut(s) 2, 615, 932
MnlI CCTC 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 925
MseI TTAA 4 cut(s) 500, 653, 716, 738
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 763
MwoI GCNNNNNNNGC 2 cut(s) 686, 695
NdeII GATC 4 cut(s) 170, 316, 335, 750
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 2 cut(s) 59, 643
NmuCI GTSAC 1 cut(s) 935
NspI RCATGY 1 cut(s) 387
PctI GAATGC 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 925
PfeI GAWTC 4 cut(s) 58, 236, 475, 584
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 5 cut(s) 226, 400, 682, 685, 688
PleI GAGTC 3 cut(s) 2, 615, 932
PpsI GAGTC 3 cut(s) 2, 615, 932
PsiI TTATAA 2 cut(s) 564, 798
PspN4I GGNNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 3 cut(s) 186, 423, 505
RsaNI GTAC 3 cut(s) 185, 422, 504
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 4 cut(s) 500, 653, 716, 738
SatI GCNGC 5 cut(s) 225, 399, 681, 684, 687
Sau3AI GATC 4 cut(s) 170, 316, 335, 750
SchI GAGTC 3 cut(s) 2, 615, 932
SduI GDGCHC 1 cut(s) 914
SetI ASST 9 cut(s) 181, 215, 226, 447, 492, 688, 738, 884, 951
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SpeI ACTAGT 2 cut(s) 601, 700
Sse9I AATT 7 cut(s) 83, 139, 269, 437, 654, 813, 969
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 693
SspMI CTAG 3 cut(s) 602, 701, 720
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 888
TasI AATT 7 cut(s) 83, 139, 269, 437, 654, 813, 969
TatI WGTACW 1 cut(s) 503
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 4 cut(s) 58, 236, 475, 584
Tru1I TTAA 4 cut(s) 500, 653, 716, 738
Tru9I TTAA 4 cut(s) 500, 653, 716, 738
TscAI CASTG 3 cut(s) 384, 912, 940
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 4 cut(s) 224, 680, 683, 686
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 5 cut(s) 57, 71, 93, 135, 792
TspRI CASTG 3 cut(s) 384, 912, 940
Van91I CCANNNNNTGG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 737
XapI RAATTY 4 cut(s) 139, 269, 437, 969
XceI RCATGY 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 925
XspI CTAG 3 cut(s) 602, 701, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.