Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011480

Physical Location & Seq

Genomic Coordinates Forward (+)

17902266 .. 17904330

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGTGACAAATACGAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTTCGATGATCCGAGTATCGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAGCGATGTGGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAAACTCCCTTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCCGATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTGCTTCCGCCATTACCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCTTGCTTTCTTTCAAGCGTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAAGGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTAGCCTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCTTATGGGGTACAGTGTTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCCGTTGGCCTGAGTGAGGATGGCATTAAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGACGTTAACAAGATTCTCAAACCAAATTATGATTATTTGAAGGAGTGTGGGTTTGGAGATTCCCAGATAGCAACCATGGTCACTGGTTATCCCCAAATCTTGATTAAGAGTGTTAAGAATTCACTACAGCCTAGGATCAGATTCCTCGTCCAGGTGATGGGAAGAGGCATGGATGAAGTGGCTTCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTCGAATCGAGGTTTAAACTTGTCAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAATTCCATGAGAAGTTTGGCTTTTCGGAGGTAACTGCAAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

333

Amino Acids

37.89

Weight (kDa)

9.12

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	12 - 320	2e-59	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca	FvH4_2g17170
malus_domestica	MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica	Prupe.8G183100_v2.0.a1
pyrus_communis	pycom05g14020 pycom10g12450
rosa_chinensis	RchiOBHm_Chr6g0281661
rosa_laevigata	RLG00000012953
rosa_multiflora	Rmu_co8485327.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186940
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana	Rw6G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	811
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	53, 797
AcsI	RAATTY	6 cut(s)	302, 575, 631, 772, 848, 956
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	604, 805, 811
AgsI	TTSAA	4 cut(s)	365, 583, 694, 868
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	4 cut(s)	429, 448, 465, 996
AluI	AGCT	4 cut(s)	429, 448, 465, 996
Alw26I	GTCTC	4 cut(s)	193, 223, 377, 648
AlwI	GGATC	2 cut(s)	53, 797
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	481, 563, 595
ApeKI	GCWGC	2 cut(s)	21, 921
ApoI	RAATTY	6 cut(s)	302, 575, 631, 772, 848, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	852
AspA2I	CCTAGG	1 cut(s)	785
AsuHPI	GGTGA	4 cut(s)	19, 529, 820, 848
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	276
AvrII	CCTAGG	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	33, 933
BccI	CCATC	4 cut(s)	235, 488, 602, 805
BceAI	ACGGC	1 cut(s)	578
BciT130I	CCWGG	1 cut(s)	806
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	193, 223, 377, 648
BfaI	CTAG	3 cut(s)	474, 786, 1000
BfmI	CTRYAG	3 cut(s)	430, 779, 919
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	22, 922
BlnI	CCTAGG	1 cut(s)	785
BlsI	GCNGC	2 cut(s)	23, 923
Bme1390I	CCNGG	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	806
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	4 cut(s)	33, 131, 185, 444
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	241
BsaJI	CCNNGG	6 cut(s)	275, 416, 478, 729, 785, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 805, 811
Bse1I	ACTGG	3 cut(s)	137, 258, 742
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	6 cut(s)	275, 416, 478, 729, 785, 859
BseGI	GGATG	5 cut(s)	234, 504, 587, 613, 832
BseLI	CCNNNNNNNGG	3 cut(s)	604, 805, 811
BseMII	CTCAG	3 cut(s)	134, 372, 590
BseNI	ACTGG	3 cut(s)	137, 258, 742
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	33, 933
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	3 cut(s)	483, 565, 597
BsiHKCI	CYCGRG	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	56, 149, 330
BslI	CCNNNNNNNGG	3 cut(s)	604, 805, 811
BsmAI	GTCTC	4 cut(s)	193, 223, 377, 648
BsmBI	CGTCTC	2 cut(s)	193, 648
BsmFI	GGGAC	3 cut(s)	56, 149, 330
BsnI	GGCC	3 cut(s)	483, 565, 597
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	58, 456, 487, 789
Bsp19I	CCATGG	2 cut(s)	729, 859
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	483, 565, 597
BspCNI	CTCAG	3 cut(s)	135, 373, 591
BspHI	TCATGA	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	923
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	53, 797
BsrI	ACTGG	3 cut(s)	137, 258, 742
BssECI	CCNNGG	6 cut(s)	275, 416, 478, 729, 785, 859
BssMI	GATC	4 cut(s)	58, 456, 487, 789
BssT1I	CCWWGG	5 cut(s)	416, 478, 729, 785, 859
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	4 cut(s)	96, 454, 545, 944
Bst6I	CTCTTC	1 cut(s)	811
BstC8I	GCNNGC	2 cut(s)	475, 994
BstDEI	CTNAG	4 cut(s)	143, 381, 599, 926
BstDSI	CCRYGG	2 cut(s)	729, 859
BstENI	CCTNNNNNAGG	2 cut(s)	602, 803
BstF5I	GGATG	5 cut(s)	234, 504, 587, 613, 832
BstKTI	GATC	4 cut(s)	61, 459, 490, 792
BstMAI	GTCTC	4 cut(s)	193, 223, 377, 648
BstMBI	GATC	4 cut(s)	58, 456, 487, 789
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	3 cut(s)	430, 779, 919
BstV1I	GCAGC	2 cut(s)	33, 933
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	483, 565, 597
BtgI	CCRYGG	2 cut(s)	729, 859
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	5 cut(s)	234, 504, 587, 613, 832
BtsIMutI	CAGTG	4 cut(s)	459, 550, 570, 735
Cac8I	GCNNGC	2 cut(s)	475, 994
CciI	TCATGA	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	627, 662
CviAII	CATG	6 cut(s)	28, 628, 730, 823, 860, 962
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	143, 381, 599, 926
DpnI	GATC	4 cut(s)	60, 458, 489, 791
DpnII	GATC	4 cut(s)	58, 456, 487, 789
DraI	TTTAAA	1 cut(s)	892
Eam1104I	CTCTTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	811
EciI	GGCGGA	1 cut(s)	280
Eco130I	CCWWGG	5 cut(s)	416, 478, 729, 785, 859
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 803
EcoRI	GAATTC	3 cut(s)	575, 772, 848
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	5 cut(s)	416, 478, 729, 785, 859
ErhI	CCWWGG	5 cut(s)	416, 478, 729, 785, 859
Esp3I	CGTCTC	2 cut(s)	193, 648
FaeI	CATG	6 cut(s)	31, 631, 733, 826, 863, 965
FaiI	YATR	9 cut(s)	29, 324, 536, 629, 684, 731, 824, 861, 963
FalI	AAGNNNNNCTT	2 cut(s)	959, 991
FaqI	GGGAC	3 cut(s)	56, 149, 330
FatI	CATG	6 cut(s)	27, 627, 729, 822, 859, 961
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	22, 922
FokI	GGATG	5 cut(s)	221, 511, 574, 620, 839
Fsp4HI	GCNGC	2 cut(s)	22, 922
FspBI	CTAG	3 cut(s)	474, 786, 1000
GluI	GCNGC	2 cut(s)	22, 922
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	483, 565, 597
Hin1II	CATG	6 cut(s)	31, 631, 733, 826, 863, 965
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	994
HinfI	GANTC	7 cut(s)	231, 271, 385, 667, 713, 795, 881
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	4 cut(s)	19, 529, 820, 848
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	4 cut(s)	63, 127, 794, 982
Hpy188III	TCNNGA	9 cut(s)	192, 208, 238, 278, 491, 580, 628, 754, 845
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	261, 359, 688, 868
HpyCH4III	ACNGT	4 cut(s)	96, 454, 545, 944
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	90, 651, 921, 992
HpyF3I	CTNAG	4 cut(s)	143, 381, 599, 926
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	6 cut(s)	31, 631, 733, 826, 863, 965
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	58, 456, 487, 789
Lsp1109I	GCAGC	2 cut(s)	33, 933
LweI	GCATC	4 cut(s)	33, 131, 185, 444
MaeI	CTAG	3 cut(s)	474, 786, 1000
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	6 cut(s)	7, 146, 558, 733, 944, 985
MalI	GATC	4 cut(s)	60, 458, 489, 791
MboI	GATC	4 cut(s)	58, 456, 487, 789
MboII	GAAGA	5 cut(s)	28, 532, 828, 880, 883
MluCI	AATT	7 cut(s)	302, 575, 631, 679, 772, 848, 956
MlyI	GAGTC	2 cut(s)	225, 379
MmeI	TCCRAC	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	6 cut(s)	411, 615, 660, 759, 768, 891
MslI	CAYNNNNRTG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	806
MssI	GTTTAAAC	1 cut(s)	892
MvaI	CCWGG	1 cut(s)	806
NcoI	CCATGG	2 cut(s)	729, 859
NdeII	GATC	4 cut(s)	58, 456, 487, 789
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	6 cut(s)	31, 631, 733, 826, 863, 965
NmuCI	GTSAC	2 cut(s)	7, 733
PagI	TCATGA	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	5 cut(s)	271, 667, 713, 795, 881
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	2 cut(s)	23, 923
PleI	GAGTC	2 cut(s)	225, 379
PmeI	GTTTAAAC	1 cut(s)	892
PpsI	GAGTC	2 cut(s)	225, 379
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PstI	CTGCAG	1 cut(s)	923
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	6 cut(s)	411, 615, 660, 759, 768, 891
SatI	GCNGC	2 cut(s)	22, 922
Sau3AI	GATC	4 cut(s)	58, 456, 487, 789
SchI	GAGTC	2 cut(s)	225, 379
ScrFI	CCNGG	1 cut(s)	806
SfaNI	GCATC	4 cut(s)	33, 131, 185, 444
SfcI	CTRYAG	3 cut(s)	430, 779, 919
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	7 cut(s)	302, 575, 631, 679, 772, 848, 956
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	3 cut(s)	474, 786, 1000
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	5 cut(s)	416, 478, 729, 785, 859
TaaI	ACNGT	4 cut(s)	96, 454, 545, 944
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	8 cut(s)	54, 69, 193, 222, 246, 438, 879, 884
TasI	AATT	7 cut(s)	302, 575, 631, 679, 772, 848, 956
TfiI	GAWTC	5 cut(s)	271, 667, 713, 795, 881
Tru1I	TTAA	6 cut(s)	411, 615, 660, 759, 768, 891
Tru9I	TTAA	6 cut(s)	411, 615, 660, 759, 768, 891
TscAI	CASTG	4 cut(s)	459, 550, 577, 742
TseFI	GTSAC	2 cut(s)	7, 733
TseI	GCWGC	2 cut(s)	21, 921
Tsp45I	GTSAC	2 cut(s)	7, 733
TspDTI	ATGAA	2 cut(s)	644, 843
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	4 cut(s)	459, 550, 577, 742
Van91I	CCANNNNNTGG	1 cut(s)	811
XagI	CCTNNNNNAGG	2 cut(s)	602, 803
XapI	RAATTY	6 cut(s)	302, 575, 631, 772, 848, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	968
XmaJI	CCTAGG	1 cut(s)	785
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	3 cut(s)	474, 786, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.