Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011480

Physical Location & Seq

Genomic Coordinates Reverse (-)

14883835 .. 14884788

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGGTTCTTCAGGGATAAGGGGTTTGATGATAAGAGTATTAGTGAAATGTTCAAGAAATGTAAGCGGCTTGAGAATATGAATAGGGAGAGTGCCTCTGAGAATTGGGCTTATTTGGAGAGTATTGGGATTCAGGAGAGGAAGCTACCTTCTGTTGTGTCAAAGTGCCCCAAGATACTTACTTTAGGCCTCCATGAGAAGCTTGTTCCTACTGTTGAGTGTCTCGCCACGCTTGGTACCAAACCGCGTGAAGTTGCGTCCGCCATTGCCAAATTCCCTCACATTCTGTCGCATAGTGTGGAAGAGAAGCTATGTCCACTGTTGGCCTTCTTTGAGGCGTTGGGTGTTCCTCAGAAGCAACTAGGTAAAATGATTTTGCTCAATCCTAGGCTCATCAGTTACAGTATTGACACAAAGCTGAAGGACATTGTGGACTTTCTTGCTGATCTTGGCCTTGCCAGAGACGGGATGATTGGCAAAGTACTGGTGAAGAACCCATTTATCATGGGTTACAGTGTTGATAAAAGACTGCGGCCTACTGCAGAGTTTTTGAAATCCTTTGGTCTCACAGAGCAGGGTATTCAGACAGTGGCAATACACTTTCCAGAAGTTCTGTGTAGAGATGTGGACAAGATTTTGAGACCCAATTTTGATTTTTTAAAAAGATCTGGATTTGAAGATGGGCAGATAGCAGCTCTAGTGACTGGTTATCCACCAATTTTGATCAAGAGCATCCACAATTCCTTAGAACCCAGAATCAAGTTTTTGGTAGAGGTAATGGGGAGACGAATTGATGAAGTCACTGACTATCCTGACTTCTTTCGCCACGGTTTGAAGAAAAAAGTGGAGCGGCGACACAAACTTTTGAAACAGAAGACGACGACAGATTGCAGCTTAAGTGAAATGCTGGACTGTAATCAAAAGAAGTTCCTCTTGAAGTTTGGTTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

318

Amino Acids

36.16

Weight (kDa)

9.3

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	3 - 311	3.1e-60	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca	FvH4_2g17170
malus_domestica	MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica	Prupe.8G183100_v2.0.a1
pyrus_communis	pycom05g14020 pycom10g12450
rosa_chinensis	RchiOBHm_Chr6g0281661
rosa_laevigata	RLG00000012953
rosa_multiflora	Rmu_co8485327.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186940
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana	Rw6G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	850
AccII	CGCG	1 cut(s)	247
AciI	CCGC	5 cut(s)	67, 245, 261, 532, 850
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	238, 483
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	895
AgsI	TTSAA	6 cut(s)	55, 553, 677, 835, 868, 937
AjuI	GAANNNNNNNTTGG	1 cut(s)	929
AluBI	AGCT	6 cut(s)	145, 202, 310, 418, 695, 894
AluI	AGCT	6 cut(s)	145, 202, 310, 418, 695, 894
Alw26I	GTCTC	5 cut(s)	227, 456, 569, 634, 778
AoxI	GGCC	4 cut(s)	187, 324, 451, 533
ApeKI	GCWGC	2 cut(s)	692, 891
ApoI	RAATTY	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	236
AspA2I	CCTAGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	881
BbvI	GCAGC	2 cut(s)	704, 903
BccI	CCATC	1 cut(s)	674
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	5 cut(s)	227, 456, 569, 634, 778
BfaI	CTAG	3 cut(s)	362, 387, 698
BfmI	CTRYAG	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	895
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	5 cut(s)	68, 533, 693, 851, 892
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	5 cut(s)	69, 534, 694, 852, 893
BmcAI	AGTACT	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	881
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpuEI	CTTGAG	1 cut(s)	92
BsaI	GGTCTC	2 cut(s)	569, 634
BsaJI	CCNNGG	2 cut(s)	386, 826
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	489, 709
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	386, 826
BseGI	GGATG	2 cut(s)	474, 732
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	90, 365
BseNI	ACTGG	2 cut(s)	489, 709
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	704, 903
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	189, 326, 453, 535
BshNI	GGYRCC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	5 cut(s)	227, 456, 569, 634, 778
BsmBI	CGTCTC	2 cut(s)	456, 778
BsnI	GGCC	4 cut(s)	189, 326, 453, 535
Bso31I	GGTCTC	2 cut(s)	569, 634
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	445, 665, 723
BspACI	CCGC	5 cut(s)	67, 245, 261, 532, 850
BspANI	GGCC	4 cut(s)	189, 326, 453, 535
BspCNI	CTCAG	2 cut(s)	91, 364
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	895
BspTNI	GGTCTC	2 cut(s)	569, 634
BsrBI	CCGCTC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	489, 709
BssECI	CCNNGG	2 cut(s)	386, 826
BssMI	GATC	3 cut(s)	445, 665, 723
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	7 cut(s)	214, 321, 404, 515, 589, 830, 914
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	895
BstDEI	CTNAG	3 cut(s)	99, 351, 745
BstDSI	CCRYGG	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	474, 732
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	448, 668, 726
BstMAI	GTCTC	5 cut(s)	227, 456, 569, 634, 778
BstMBI	GATC	3 cut(s)	445, 665, 723
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	704, 903
BstV2I	GAAGAC	1 cut(s)	881
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	189, 326, 453, 535
BtgI	CCRYGG	1 cut(s)	826
BtsCI	GGATG	2 cut(s)	474, 732
BtsIMutI	CAGTG	4 cut(s)	317, 520, 594, 801
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	237, 482
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	2 cut(s)	194, 505
CviQI	GTAC	2 cut(s)	237, 482
DdeI	CTNAG	3 cut(s)	99, 351, 745
DpnI	GATC	3 cut(s)	447, 667, 725
DpnII	GATC	3 cut(s)	445, 665, 723
DraI	TTTAAA	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	569, 634
Eco57I	CTGAAG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	2 cut(s)	456, 778
FaeI	CATG	2 cut(s)	197, 508
FaiI	YATR	5 cut(s)	80, 195, 294, 313, 506
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FatI	CATG	2 cut(s)	193, 504
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	5 cut(s)	68, 533, 693, 851, 892
FokI	GGATG	2 cut(s)	481, 719
Fsp4HI	GCNGC	5 cut(s)	68, 533, 693, 851, 892
FspBI	CTAG	3 cut(s)	362, 387, 698
GluI	GCNGC	5 cut(s)	68, 533, 693, 851, 892
HaeIII	GGCC	4 cut(s)	189, 326, 453, 535
HgaI	GACGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	197, 508
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	130, 756
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	317, 433, 628
Hpy188I	TCNGA	3 cut(s)	100, 354, 585
Hpy188III	TCNNGA	7 cut(s)	55, 134, 605, 669, 727, 812, 934
Hpy8I	GTNNAC	3 cut(s)	317, 433, 628
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	3 cut(s)	159, 337, 415
HpyCH4III	ACNGT	7 cut(s)	214, 321, 404, 515, 589, 830, 914
HpyCH4V	TGCA	2 cut(s)	542, 891
HpyF3I	CTNAG	3 cut(s)	99, 351, 745
Hsp92II	CATG	2 cut(s)	197, 508
KpnI	GGTACC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	445, 665, 723
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	2 cut(s)	704, 903
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	3 cut(s)	362, 387, 698
MaeIII	GTNAC	4 cut(s)	398, 509, 700, 799
MalI	GATC	3 cut(s)	447, 667, 725
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	3 cut(s)	445, 665, 723
MboII	GAAGA	5 cut(s)	314, 502, 689, 847, 886
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	6 cut(s)	103, 272, 646, 717, 739, 789
MnlI	CCTC	8 cut(s)	106, 132, 200, 288, 328, 360, 766, 941
MseI	TTAA	2 cut(s)	659, 896
MspCI	CTTAAG	1 cut(s)	895
MvnI	CGCG	1 cut(s)	247
NdeII	GATC	3 cut(s)	445, 665, 723
NlaIII	CATG	2 cut(s)	197, 508
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	700, 799
PceI	AGGCCT	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	130, 756
PkrI	GCNGC	5 cut(s)	69, 534, 694, 852, 893
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	2 cut(s)	238, 483
RsaNI	GTAC	2 cut(s)	237, 482
SaqAI	TTAA	2 cut(s)	659, 896
SatI	GCNGC	5 cut(s)	68, 533, 693, 851, 892
Sau3AI	GATC	3 cut(s)	445, 665, 723
ScaI	AGTACT	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	9 cut(s)	147, 151, 204, 312, 367, 420, 697, 777, 896
SfaNI	GCATC	1 cut(s)	741
SfcI	CTRYAG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	71, 895
SmoI	CTYRAG	2 cut(s)	71, 895
Sse9I	AATT	6 cut(s)	103, 272, 646, 717, 739, 789
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	5 cut(s)	67, 245, 261, 532, 850
SspMI	CTAG	3 cut(s)	362, 387, 698
StuI	AGGCCT	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	7 cut(s)	214, 321, 404, 515, 589, 830, 914
TasI	AATT	6 cut(s)	103, 272, 646, 717, 739, 789
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	3 cut(s)	70, 535, 853
TfiI	GAWTC	2 cut(s)	130, 756
Tru1I	TTAA	2 cut(s)	659, 896
Tru9I	TTAA	2 cut(s)	659, 896
TscAI	CASTG	4 cut(s)	324, 520, 594, 808
TseFI	GTSAC	2 cut(s)	700, 799
TseI	GCWGC	2 cut(s)	692, 891
Tsp45I	GTSAC	2 cut(s)	700, 799
TspDTI	ATGAA	2 cut(s)	95, 810
TspRI	CASTG	4 cut(s)	324, 520, 594, 808
Vha464I	CTTAAG	1 cut(s)	895
XapI	RAATTY	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	386
XspI	CTAG	3 cut(s)	362, 387, 698
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.