Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011480

Physical Location & Seq

Genomic Coordinates Reverse (-)

23125098 .. 23128104

Gene Structure 3007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1144800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGGTTCTTCAGGGATAAAGGTTTTGATGATAAGAGCATTCAGGATATGCTCAAAAAGTGCAAGCGTCTTGAGAACGCGCAAGCAGAAAGAGCCTCCGAGAATTGGGCTTATTTGAAGAGTATTGGCATTCAGGAGAGGAAGCTACCTTTTGTTGTCTCAAAGTGCCCCAAGATACTTACTTTGGCTCTCCACGAGAAGCTCATCCCTACAGTTGAGTGCCTCACCACGCTTGGTACTAAGCCCCGTGAAGTTGCGTCTGCCATTGCCAAATTCCCTCACATTCTGTCCCATAGCGTGGAAGAGAAGCTCTGTCCCCTTTTGGGATTCTTTGAGGCTCTGGGAATTCCTCAAAAGCAACTTGGCAAAATGATTTTGCTCAATCCAAGGCTCATCAGCTACAGCATTGAAGCAAAGCTTTCTGAAATCGTGAACTTTCTTGCTAATCTTGGCCTATCCAGAGAAGGAATGATTGGAAAAGTACTGGTAAAGAACCCGTTTATCATGGGTTATAGCGTTGACAAAAGACTGCGCCCTACGGCAGAGTTTTTGAAATCAGTAGGTCTCACAGAGCAGGGTCTTCAGACAGTGGTAATGAACTTTCCGGAAGTGTTGTGTAGAGATGTGGACAAGATTCTGAGACCCAATTTCGAATTTCTAAAGAGAAGTGGATTTGAAGATGGACAGATAGCGGCTTTGGTGTCTGGTTATCCACCCATTCTGATCAAGAGCATCCACAACTCTTTAGAACCGAGAATCAGGTACTTGGTAGAGGTTATGGGGAGACGAATTGATGAAGTCGCTGATTATCCTGACTTCTTCCGCCATGGTCTGAAGAAAAGAGTGGAGCGGCGACACAAACTTTTGAAACAGACGACAACTGATTGTAGCTTGAGTGAAATGCTGGACTGTAATCAAAAGAAGTTCGTAACGAAGTTTGGTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

317

Amino Acids

36.08

Weight (kDa)

9.44

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	3 - 309	6.5e-60	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca	FvH4_2g17170
malus_domestica	MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica	Prupe.8G183100_v2.0.a1
pyrus_communis	pycom05g14020 pycom10g12450
rosa_chinensis	RchiOBHm_Chr6g0281661
rosa_laevigata	RLG00000012953
rosa_multiflora	Rmu_co8485327.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186940
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana	Rw6G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	850
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	604
AciI	CCGC	3 cut(s)	692, 823, 850
AcsI	RAATTY	3 cut(s)	272, 345, 653
AcuI	CTGAAG	2 cut(s)	566, 854
AfaI	GTAC	3 cut(s)	238, 483, 764
AfiI	CCNNNNNNNGG	3 cut(s)	105, 298, 323
AgsI	TTSAA	5 cut(s)	118, 410, 553, 677, 868
AjuI	GAANNNNNNNTTGG	3 cut(s)	456, 488, 926
AluBI	AGCT	6 cut(s)	145, 202, 310, 399, 418, 891
AluI	AGCT	6 cut(s)	145, 202, 310, 399, 418, 891
Alw26I	GTCTC	4 cut(s)	163, 569, 634, 778
Aor13HI	TCCGGA	1 cut(s)	604
AoxI	GGCC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	272, 345, 653
AspLEI	GCGC	2 cut(s)	82, 534
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	572
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	555
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	4 cut(s)	163, 569, 634, 778
BfmI	CTRYAG	2 cut(s)	210, 400
BisI	GCNGC	2 cut(s)	693, 851
BlsI	GCNGC	2 cut(s)	694, 852
BmcAI	AGTACT	1 cut(s)	483
BmsI	GCATC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	572
Bpu14I	TTCGAA	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	92, 913
BsaI	GGTCTC	2 cut(s)	569, 634
BsaJI	CCNNGG	2 cut(s)	386, 826
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 298, 323
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	604
BseDI	CCNNGG	2 cut(s)	386, 826
BseGI	GGATG	2 cut(s)	204, 732
BseLI	CCNNNNNNNGG	3 cut(s)	105, 298, 323
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	2 cut(s)	274, 300
BslI	CCNNNNNNNGG	3 cut(s)	105, 298, 323
BsmAI	GTCTC	4 cut(s)	163, 569, 634, 778
BsmBI	CGTCTC	1 cut(s)	778
BsmFI	GGGAC	2 cut(s)	274, 300
BsmI	GAATGC	2 cut(s)	39, 129
BsnI	GGCC	1 cut(s)	453
Bso31I	GGTCTC	2 cut(s)	569, 634
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	723
Bsp19I	CCATGG	1 cut(s)	826
BspACI	CCGC	3 cut(s)	692, 823, 850
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	630
BspEI	TCCGGA	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	651
BspTNI	GGTCTC	2 cut(s)	569, 634
BsrBI	CCGCTC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	386, 826
BssMI	GATC	1 cut(s)	723
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	386, 826
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	214, 589, 911
Bst6I	CTCTTC	2 cut(s)	113, 297
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	65, 84
BstDEI	CTNAG	2 cut(s)	240, 638
BstDSI	CCRYGG	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	204, 732
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	82, 534
BstKTI	GATC	1 cut(s)	726
BstMAI	GTCTC	4 cut(s)	163, 569, 634, 778
BstMBI	GATC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	2 cut(s)	210, 400
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	826
BtsCI	GGATG	2 cut(s)	204, 732
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	65, 84
CfoI	GCGC	2 cut(s)	82, 534
CseI	GACGC	2 cut(s)	56, 246
Csp6I	GTAC	3 cut(s)	237, 482, 763
CviAII	CATG	2 cut(s)	505, 827
CviQI	GTAC	3 cut(s)	237, 482, 763
DdeI	CTNAG	2 cut(s)	240, 638
DpnI	GATC	1 cut(s)	725
DpnII	GATC	1 cut(s)	723
Eam1104I	CTCTTC	2 cut(s)	113, 297
EarI	CTCTTC	2 cut(s)	113, 297
EciI	GGCGGA	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	386, 826
Eco31I	GGTCTC	2 cut(s)	569, 634
Eco57I	CTGAAG	2 cut(s)	566, 854
EcoRI	GAATTC	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	386, 826
ErhI	CCWWGG	2 cut(s)	386, 826
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	2 cut(s)	508, 830
FaiI	YATR	6 cut(s)	50, 294, 506, 513, 779, 828
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	2 cut(s)	274, 300
FatI	CATG	2 cut(s)	504, 826
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	693, 851
FokI	GGATG	2 cut(s)	191, 719
Fsp4HI	GCNGC	2 cut(s)	693, 851
GlaI	GCGC	2 cut(s)	81, 533
GluI	GCNGC	2 cut(s)	693, 851
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	2 cut(s)	56, 246
HhaI	GCGC	2 cut(s)	82, 534
Hin1II	CATG	2 cut(s)	508, 830
Hin6I	GCGC	2 cut(s)	80, 532
HinP1I	GCGC	2 cut(s)	80, 532
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	327, 634, 756
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	433, 520, 628
Hpy188I	TCNGA	6 cut(s)	100, 424, 585, 639, 723, 834
Hpy188III	TCNNGA	8 cut(s)	44, 71, 134, 430, 459, 605, 727, 812
Hpy8I	GTNNAC	3 cut(s)	433, 520, 628
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	3 cut(s)	214, 589, 911
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	240, 638
Hsp92II	CATG	2 cut(s)	508, 830
HspAI	GCGC	2 cut(s)	80, 532
Kpn2I	TCCGGA	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	847
LweI	GCATC	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	1 cut(s)	725
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	1 cut(s)	723
MboII	GAAGA	6 cut(s)	130, 314, 572, 689, 811, 847
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	6 cut(s)	103, 272, 345, 646, 653, 789
MnlI	CCTC	7 cut(s)	106, 132, 233, 288, 328, 360, 766
MroI	TCCGGA	1 cut(s)	604
MspI	CCGG	1 cut(s)	605
Mva1269I	GAATGC	2 cut(s)	39, 129
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	826
NdeII	GATC	1 cut(s)	723
NlaIII	CATG	2 cut(s)	508, 830
NspV	TTCGAA	1 cut(s)	651
PctI	GAATGC	2 cut(s)	39, 129
PfeI	GAWTC	3 cut(s)	327, 634, 756
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	694, 852
RsaI	GTAC	3 cut(s)	238, 483, 764
RsaNI	GTAC	3 cut(s)	237, 482, 763
SatI	GCNGC	2 cut(s)	693, 851
Sau3AI	GATC	1 cut(s)	723
ScaI	AGTACT	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	741
SfcI	CTRYAG	2 cut(s)	210, 400
SfuI	TTCGAA	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	71, 892
SmoI	CTYRAG	2 cut(s)	71, 892
Sse9I	AATT	6 cut(s)	103, 272, 345, 646, 653, 789
SsiI	CCGC	3 cut(s)	692, 823, 850
StyI	CCWWGG	2 cut(s)	386, 826
TaaI	ACNGT	3 cut(s)	214, 589, 911
TaqI	TCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	103, 272, 345, 646, 653, 789
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	2 cut(s)	695, 853
TfiI	GAWTC	3 cut(s)	327, 634, 756
TscAI	CASTG	1 cut(s)	594
TspDTI	ATGAA	2 cut(s)	611, 810
TspRI	CASTG	1 cut(s)	594
Van91I	CCANNNNNTGG	1 cut(s)	298
XapI	RAATTY	3 cut(s)	272, 345, 653
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.