Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011480

Physical Location & Seq

Genomic Coordinates Reverse (-)

18239478 .. 18241110

Gene Structure 1633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAACCAGCACCACCCAAAATGGTAGTACTAGTATCATGTGGTTCTTCAGGGATAAAGGTTTTGATGATAAGAGCATTCAGGATATGCTAAAAAAGTGCAAGCGTCTTGAGAATGTGCATGGGGAAACAGCCTCTGAGAACTGGGCTTATTTGAAAAGTATTGGCATTCAAGAGAGAAAGCTACCTTCTGTTGTTTCAAAGTGCCCCAAGATACTTACTTTGGCCCTCCATGAGAAGCTTGTACCTACGGTTGAGTGCCTCACCACGCTCGGTACCAAACCCCGCGATGTTGCATCTGCCATTGCCAAATTCCCTCACATTCTGTCCCATAGTGTGGAAGAGAAGCTCTGTCCGCTCTTGGCCTTCTTTGAGGCACTGGGAATTCCTCAAAAGCAACTTGGGAAAATGATTTTGCTCAATCCTAGGCTCATCAGCTACAGCATTGAAGCAAAGCTGTCTGAAATTGTGAACTTTCTTGCTAATCTTGGCCTTTCCAGAGAAGGGATGATTGGAAAAGTACTGGTAAAGAACCCATTTATCATGGGCTATAGTGTTGAAAAAAGATTGCGCCCTACTGCAGAGTTTTTGAAATCAGTTGGTCTCACAGAGCAGGGTCTTCAGACTGTGGCAATGAGCTTTCCAGAAGTGTTGTGTAGAGACGTAGACAAGATTCTGAGGCCCAATTTTGATTATCTAAAGAGAAGTGGATTTGAAGATGGTCAGATAGCAGCTTTGGTATCTGGTTATCCTCCAATTTTGATCAAGAGCATCCACAATTCTCTAGAACCTAGAATCAGGTTCTTGGTAGAGGTAATGGGGAGACAAATTGATGAGGTTGCTGATTATCCCGACTTCTTTCGCCATGGTTTGAAGAAAAGAGTGGAGCGGCGACACAAACTTTTGAAACAGAGGACAACCCATTGTAGCTTGAGTGAAATGCTGGACTGTAATCAAAAGAAGTTCGCAACGAAGTTTGGTTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

330

Amino Acids

37.28

Weight (kDa)

9.38

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca	FvH4_2g17170
malus_domestica	MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica	Prupe.8G183100_v2.0.a1
pyrus_communis	pycom05g14020 pycom10g12450
rosa_chinensis	RchiOBHm_Chr6g0281661
rosa_laevigata	RLG00000012953
rosa_multiflora	Rmu_co8485327.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186940
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana	Rw6G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccBSI	CCGCTC	2 cut(s)	358, 889
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	286, 356, 889
AcsI	RAATTY	2 cut(s)	311, 384
AcuI	CTGAAG	2 cut(s)	34, 605
AfaI	GTAC	4 cut(s)	31, 246, 277, 522
AfiI	CCNNNNNNNGG	2 cut(s)	337, 504
AgsI	TTSAA	9 cut(s)	157, 173, 201, 449, 560, 592, 716, 874, 907
AhlI	ACTAGT	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	3 cut(s)	495, 527, 965
AluBI	AGCT	8 cut(s)	184, 241, 349, 438, 457, 639, 734, 930
AluI	AGCT	8 cut(s)	184, 241, 349, 438, 457, 639, 734, 930
Alw26I	GTCTC	3 cut(s)	608, 654, 817
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	4 cut(s)	225, 363, 490, 680
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	2 cut(s)	311, 384
Asp718I	GGTACC	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	226, 681
AsuHPI	GGTGA	1 cut(s)	256
AvrII	CCTAGG	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	743
BccI	CCATC	1 cut(s)	713
BclI	TGATCA	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	608, 654, 817
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	4 cut(s)	33, 426, 785, 792
BfmI	CTRYAG	3 cut(s)	439, 550, 579
BisI	GCNGC	2 cut(s)	732, 890
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	733, 891
BmcAI	AGTACT	2 cut(s)	31, 522
BmgT120I	GGNCC	2 cut(s)	226, 681
BmiI	GGNNCC	1 cut(s)	277
BmrI	ACTGGG	2 cut(s)	154, 389
BmsI	GCATC	2 cut(s)	305, 780
BmuI	ACTGGG	2 cut(s)	154, 389
BpiI	GAAGAC	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	131, 952
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	425, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 504
Bse1I	ACTGG	3 cut(s)	149, 384, 528
Bse3DI	GCAATG	2 cut(s)	303, 639
BseDI	CCNNGG	2 cut(s)	425, 865
BseGI	GGATG	2 cut(s)	513, 771
BseLI	CCNNNNNNNGG	2 cut(s)	337, 504
BseMI	GCAATG	2 cut(s)	303, 639
BseMII	CTCAG	2 cut(s)	129, 668
BseNI	ACTGG	3 cut(s)	149, 384, 528
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	227, 365, 492, 682
BshNI	GGYRCC	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	337, 504
BsmAI	GTCTC	3 cut(s)	608, 654, 817
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	2 cut(s)	78, 168
BsnI	GGCC	4 cut(s)	227, 365, 492, 682
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	762
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	3 cut(s)	286, 356, 889
BspANI	GGCC	4 cut(s)	227, 365, 492, 682
BspCNI	CTCAG	2 cut(s)	130, 669
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	608
BsrBI	CCGCTC	2 cut(s)	358, 889
BsrDI	GCAATG	2 cut(s)	303, 639
BsrI	ACTGG	3 cut(s)	149, 384, 528
BssECI	CCNNGG	2 cut(s)	425, 865
BssMI	GATC	1 cut(s)	762
BssT1I	CCWWGG	2 cut(s)	425, 865
Bst4CI	ACNGT	3 cut(s)	253, 628, 950
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	138, 677
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	513, 771
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	1 cut(s)	765
BstMAI	GTCTC	3 cut(s)	608, 654, 817
BstMBI	GATC	1 cut(s)	762
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstSFI	CTRYAG	3 cut(s)	439, 550, 579
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	743
BstV2I	GAAGAC	1 cut(s)	611
BsuRI	GGCC	4 cut(s)	227, 365, 492, 682
BtgI	CCRYGG	1 cut(s)	865
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	513, 771
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	2 cut(s)	226, 681
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	30, 245, 276, 521
CviAII	CATG	5 cut(s)	40, 122, 233, 544, 866
CviQI	GTAC	4 cut(s)	30, 245, 276, 521
DdeI	CTNAG	2 cut(s)	138, 677
DpnI	GATC	1 cut(s)	764
DpnII	GATC	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	425, 865
Eco31I	GGTCTC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	34, 605
EcoRI	GAATTC	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	425, 865
ErhI	CCWWGG	2 cut(s)	425, 865
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	5 cut(s)	43, 125, 236, 547, 869
FaiI	YATR	8 cut(s)	41, 89, 123, 234, 333, 545, 552, 867
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	5 cut(s)	39, 121, 232, 543, 865
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	762
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	732, 890
FokI	GGATG	2 cut(s)	520, 758
Fsp4HI	GCNGC	2 cut(s)	732, 890
FspBI	CTAG	4 cut(s)	33, 426, 785, 792
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	2 cut(s)	732, 890
HaeIII	GGCC	4 cut(s)	227, 365, 492, 682
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	43, 125, 236, 547, 869
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	673, 795
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	472, 667
Hpy188I	TCNGA	5 cut(s)	139, 463, 624, 678, 726
Hpy188III	TCNNGA	8 cut(s)	83, 110, 173, 498, 644, 766, 785, 851
Hpy8I	GTNNAC	2 cut(s)	472, 667
HpyAV	CCTTC	3 cut(s)	198, 376, 497
HpyCH4III	ACNGT	3 cut(s)	253, 628, 950
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	102, 121, 296, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	138, 677
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	5 cut(s)	43, 125, 236, 547, 869
HspAI	GCGC	1 cut(s)	571
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	1 cut(s)	743
LweI	GCATC	2 cut(s)	305, 780
MaeI	CTAG	4 cut(s)	33, 426, 785, 792
MaeII	ACGT	1 cut(s)	663
MalI	GATC	1 cut(s)	764
MbiI	CCGCTC	2 cut(s)	358, 889
MboI	GATC	1 cut(s)	762
MboII	GAAGA	5 cut(s)	40, 353, 611, 728, 886
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	7 cut(s)	311, 384, 465, 685, 756, 778, 828
Mva1269I	GAATGC	2 cut(s)	78, 168
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	1 cut(s)	762
NlaIII	CATG	5 cut(s)	43, 125, 236, 547, 869
NlaIV	GGNNCC	1 cut(s)	277
PctI	GAATGC	2 cut(s)	78, 168
PfeI	GAWTC	2 cut(s)	673, 795
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	733, 891
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	226, 681
PstI	CTGCAG	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	31, 246, 277, 522
RsaNI	GTAC	4 cut(s)	30, 245, 276, 521
SatI	GCNGC	2 cut(s)	732, 890
Sau3AI	GATC	1 cut(s)	762
Sau96I	GGNCC	2 cut(s)	226, 681
ScaI	AGTACT	2 cut(s)	31, 522
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	2 cut(s)	305, 780
SfcI	CTRYAG	3 cut(s)	439, 550, 579
SmlI	CTYRAG	2 cut(s)	110, 931
SmoI	CTYRAG	2 cut(s)	110, 931
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	7 cut(s)	311, 384, 465, 685, 756, 778, 828
SsiI	CCGC	3 cut(s)	286, 356, 889
SspMI	CTAG	4 cut(s)	33, 426, 785, 792
StyI	CCWWGG	2 cut(s)	425, 865
TaaI	ACNGT	3 cut(s)	253, 628, 950
TaiI	ACGT	1 cut(s)	666
TasI	AATT	7 cut(s)	311, 384, 465, 685, 756, 778, 828
TatI	WGTACW	2 cut(s)	29, 520
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	2 cut(s)	673, 795
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	731
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	311, 384
XbaI	TCTAGA	1 cut(s)	784
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	4 cut(s)	33, 426, 785, 792
ZrmI	AGTACT	2 cut(s)	31, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.