pycom10g12450
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011480
Physical Location & Seq
Reverse (-)
15939176 .. 15940165
990 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g12450.1

Sequence Viewer

Length: 990 bp
ATGGAAACCAGCACCACCCAAAATGGTGGTTCTAGTATCATGTGGTTCTTCAGGGATAAAGGTTTTGATGATAAGAGCATTCAAGATATGCTTAAAAAGTGCAAGCGTCTTGAGAACGGGCAAGCAGAAAGAGCCTCCGAGAATTGGGCTTATTTGAAGAGTATTGGCATTCAGGAGAGGAAGCTACCTTTTGTTGTCTCAAAGTGCCCCAAGATACTTACTTTGGCTCTCCACGAGAAGCTCATCCCTACGGTTGAGTGCCTCACCACGCTTGGTACCAAGCCCCGTGAAGTTGCGTCTGCCATTGCCAAATTCCCTCACATTCTGTCCCATAGCGTGGAAGAGAAGCTCTGTCCCCTTTTGGGATTCTTTGAGGCTCTGGGAATTCCTCAAAAGCAACTTGGAAAAATGATTTTGCTCAATCCAAGGCTCATCAGCTACAGTATTGAAGCAAAGCTTTCTGAAATCGTGAACTTTCTTGCTAATCTTGGCCTATCCAGGGAAGGAATGATTGGAAAAGTACTGGTAAAGAACCCATTTATCATGGGTTATAGCGTTGACAAAAGACTGCGCCCTACGGCAGAGTTTTTGAAATCAGTAGGTCTCACAGAGCAGGGTCTTCAGACAGTGGTAATGAACTTTCCGGAAGTGTTGTGTAGAGATGTGGACAAGATTCTGAGACCCAATTTCGAATTTCTAAAGAGAAGTGGATTTGAAGATGGACAGATAGCGGCTTTGGTGTCTGGTTATCCACCCATTCTGATCAAGAGCATCCACAACTCTTTAGAACCGAGAATCAGGTACTTGGTAGAGGTTATGGGGAGACGAATTGATGAAGTCGCTGATTATCCTGACTTCTTCCGCCATGGTCTGAAGAAAAGAGTGGAGCGGCGACACAAACTTTTGAAACAGACGACAACTGATTGTAGCTTGAGTGAAATGCTGGACTGTAATCAAAAGAAGTTCATAACGAAGTTTGGTTTGGTTTGA

Protein Analysis

330

Amino Acids

37.38

Weight (kDa)

9.38

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 16 - 322 3.1e-59 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca FvH4_2g17170
malus_domestica MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica Prupe.8G183100_v2.0.a1
pyrus_communis pycom05g14020 pycom10g12450
rosa_chinensis RchiOBHm_Chr6g0281661
rosa_laevigata RLG00000012953
rosa_multiflora Rmu_co8485327.1_g000002
rosa_roxburghii Rroxscaffold_7G00186940
rosa_rugosa Rorug06G0142300
rosa_samantha Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana Rw6G022120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 889
AccIII TCCGGA 1 cut(s) 643
AciI CCGC 3 cut(s) 731, 862, 889
AcsI RAATTY 3 cut(s) 311, 384, 692
AcuI CTGAAG 3 cut(s) 34, 605, 893
AfaI GTAC 3 cut(s) 277, 522, 803
AfiI CCNNNNNNNGG 4 cut(s) 144, 337, 362, 499
AgsI TTSAA 6 cut(s) 83, 157, 449, 592, 716, 907
AjnI CCWGG 1 cut(s) 497
AjuI GAANNNNNNNTTGG 3 cut(s) 495, 527, 965
AluBI AGCT 6 cut(s) 184, 241, 349, 438, 457, 930
AluI AGCT 6 cut(s) 184, 241, 349, 438, 457, 930
Alw26I GTCTC 4 cut(s) 202, 608, 673, 817
Aor13HI TCCGGA 1 cut(s) 643
AoxI GGCC 1 cut(s) 490
ApoI RAATTY 3 cut(s) 311, 384, 692
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 611
BccI CCATC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 1 cut(s) 762
BcoDI GTCTC 4 cut(s) 202, 608, 673, 817
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 439
BisI GCNGC 2 cut(s) 732, 890
BlsI GCNGC 2 cut(s) 733, 891
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 131, 952
BsaI GGTCTC 2 cut(s) 608, 673
BsaJI CCNNGG 3 cut(s) 425, 498, 865
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 337, 362, 499
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 303
BseAI TCCGGA 1 cut(s) 643
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 3 cut(s) 425, 498, 865
BseGI GGATG 2 cut(s) 243, 771
BseLI CCNNNNNNNGG 4 cut(s) 144, 337, 362, 499
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 209
BshFI GGCC 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 644
BslFI GGGAC 2 cut(s) 313, 339
BslI CCNNNNNNNGG 4 cut(s) 144, 337, 362, 499
BsmAI GTCTC 4 cut(s) 202, 608, 673, 817
BsmBI CGTCTC 1 cut(s) 817
BsmFI GGGAC 2 cut(s) 313, 339
BsmI GAATGC 2 cut(s) 78, 168
BsnI GGCC 1 cut(s) 492
Bso31I GGTCTC 2 cut(s) 608, 673
Bsp119I TTCGAA 1 cut(s) 690
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 643
Bsp143I GATC 1 cut(s) 762
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 3 cut(s) 731, 862, 889
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 690
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 2 cut(s) 608, 673
BsrBI CCGCTC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 425, 498, 865
BssMI GATC 1 cut(s) 762
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 425, 865
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 4 cut(s) 253, 443, 628, 950
Bst6I CTCTTC 2 cut(s) 152, 336
BstBI TTCGAA 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 104, 123
BstDEI CTNAG 1 cut(s) 677
BstDSI CCRYGG 1 cut(s) 865
BstF5I GGATG 2 cut(s) 243, 771
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 1 cut(s) 765
BstMAI GTCTC 4 cut(s) 202, 608, 673, 817
BstMBI GATC 1 cut(s) 762
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 611
BstXI CCANNNNNNTGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 865
BtsCI GGATG 2 cut(s) 243, 771
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 2 cut(s) 104, 123
CfoI GCGC 1 cut(s) 573
CseI GACGC 2 cut(s) 95, 285
Csp6I GTAC 3 cut(s) 276, 521, 802
CviAII CATG 3 cut(s) 40, 544, 866
CviQI GTAC 3 cut(s) 276, 521, 802
DdeI CTNAG 1 cut(s) 677
DpnI GATC 1 cut(s) 764
DpnII GATC 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 152, 336
EarI CTCTTC 2 cut(s) 152, 336
EciI GGCGGA 1 cut(s) 851
Eco130I CCWWGG 2 cut(s) 425, 865
Eco31I GGTCTC 2 cut(s) 608, 673
Eco57I CTGAAG 3 cut(s) 34, 605, 893
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 2 cut(s) 425, 865
ErhI CCWWGG 2 cut(s) 425, 865
Esp3I CGTCTC 1 cut(s) 817
FaeI CATG 3 cut(s) 43, 547, 869
FaiI YATR 8 cut(s) 41, 89, 333, 545, 552, 818, 867, 968
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 441, 473
FaqI GGGAC 2 cut(s) 313, 339
FatI CATG 3 cut(s) 39, 543, 865
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 732, 890
FokI GGATG 2 cut(s) 230, 758
Fsp4HI GCNGC 2 cut(s) 732, 890
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 572
GluI GCNGC 2 cut(s) 732, 890
HaeIII GGCC 1 cut(s) 492
HapII CCGG 1 cut(s) 644
HgaI GACGC 2 cut(s) 95, 285
HhaI GCGC 1 cut(s) 573
Hin1II CATG 3 cut(s) 43, 547, 869
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 366, 673, 795
HpaII CCGG 1 cut(s) 644
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 3 cut(s) 472, 559, 667
Hpy188I TCNGA 6 cut(s) 139, 463, 624, 678, 762, 873
Hpy188III TCNNGA 7 cut(s) 83, 110, 173, 469, 644, 766, 851
Hpy8I GTNNAC 3 cut(s) 472, 559, 667
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 4 cut(s) 253, 443, 628, 950
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 677
Hsp92II CATG 3 cut(s) 43, 547, 869
HspAI GCGC 1 cut(s) 571
Kpn2I TCCGGA 1 cut(s) 643
KpnI GGTACC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 1 cut(s) 762
LmnI GCTCC 1 cut(s) 886
LweI GCATC 1 cut(s) 780
MaeI CTAG 1 cut(s) 33
MalI GATC 1 cut(s) 764
MbiI CCGCTC 1 cut(s) 889
MboI GATC 1 cut(s) 762
MboII GAAGA 7 cut(s) 40, 169, 353, 611, 728, 850, 886
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 6 cut(s) 142, 311, 384, 685, 692, 828
MnlI CCTC 7 cut(s) 145, 171, 272, 327, 367, 399, 805
MroI TCCGGA 1 cut(s) 643
MseI TTAA 1 cut(s) 93
MspI CCGG 1 cut(s) 644
MspR9I CCNGG 1 cut(s) 499
Mva1269I GAATGC 2 cut(s) 78, 168
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 865
NdeII GATC 1 cut(s) 762
NlaIII CATG 3 cut(s) 43, 547, 869
NlaIV GGNNCC 1 cut(s) 277
NspV TTCGAA 1 cut(s) 690
PctI GAATGC 2 cut(s) 78, 168
PfeI GAWTC 3 cut(s) 366, 673, 795
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 2 cut(s) 733, 891
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 3 cut(s) 277, 522, 803
RsaNI GTAC 3 cut(s) 276, 521, 802
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 732, 890
Sau3AI GATC 1 cut(s) 762
ScaI AGTACT 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 1 cut(s) 439
SfuI TTCGAA 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 110, 931
SmoI CTYRAG 2 cut(s) 110, 931
Sse9I AATT 6 cut(s) 142, 311, 384, 685, 692, 828
SsiI CCGC 3 cut(s) 731, 862, 889
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 2 cut(s) 425, 865
TaaI ACNGT 4 cut(s) 253, 443, 628, 950
TaqI TCGA 1 cut(s) 690
TasI AATT 6 cut(s) 142, 311, 384, 685, 692, 828
TatI WGTACW 1 cut(s) 520
TauI GCSGC 2 cut(s) 734, 892
TfiI GAWTC 3 cut(s) 366, 673, 795
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 633
TspDTI ATGAA 3 cut(s) 650, 849, 955
TspRI CASTG 1 cut(s) 633
Van91I CCANNNNNTGG 1 cut(s) 337
XapI RAATTY 3 cut(s) 311, 384, 692
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.