MD05G1145000.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011480
Physical Location & Seq
Reverse (-)
27640304 .. 27641224
921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1145000.v1.1.491

Sequence Viewer

Length: 921 bp
ATGATAAGAGCATTCAGGATATGCTCAAAAAGTGCGAGTCTCCAGAATGCGCAAGCAGAAAGATCCTCCGAGAATTGGGCTTATTTGAAGAGTATTGGCATTCAGGAGAGAAAGCTGCCCTTTGTTGTTTCAAAGTGCCCCAAGATACTTACTTTGGCTCTCCATGAGAAGCTTATTCCTACGGTTGAGTGCCTTACCACGCTTGGTGCCAAACCGCATGAAGTTGCGTCTTCCATTGCCAAATTCCCACACATTCTGTCCCACAGTGTGGAAGAGAAGCTTTGTCCGCTTTTGGGCTTCTTTGAGGCACTGGGAATTCCCCAAAAGCAACTTGGAAAAATGATTTTGCTCAATCCGAGGCTCATCAGCTACAGCATTGAAGCAAAGCTGTCTGAAATTGTAAAATTTCTTGCTAATCTTGGCCTTTCCAGAGAAGGGATGATTGGAAAAGTACTGGTAAAGAATCCGTTTATCATGGGTTATAGCATTGACAAAAGATTGCGCCCTACAGCAGAGTTTTTGAAATCAGTAGGCCTCACAGAGCAGGGTCTTCAGACAGTGGTAATGAACTTTCCAGAAGTGTTATGTAGAGACGTGGACAAGATTCTGAGACCCAATTTCGAATATTTAAAGAGAAGTGGATTTGAAGATGGCCAGATAACGGCTTTGGTGTCTGGTTATCCACGCATTCTGATCAAAAGCATCCACAACTCTTTAGAGCCGAGAATCAGGTACTTGGTAGAGGTAATGGGGAGACGAATTAATGAAGTCGCTGATTATCCTGACTTCTTCCGCCATGGTTTGAAGAAAAGAGTGGAGCGGCGACACAAGCTTTTGAAACAGACTACAACTGATTGTAGCTTGAGTGAAATGCTGAACTGTAATCAAAACAAGTTCGTAACGAAGTTTGGTTTGGTTTGA

Protein Analysis

307

Amino Acids

34.73

Weight (kDa)

9.65

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 16 - 299 2e-56 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca FvH4_2g17170
malus_domestica MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica Prupe.8G183100_v2.0.a1
pyrus_communis pycom05g14020 pycom10g12450
rosa_chinensis RchiOBHm_Chr6g0281661
rosa_laevigata RLG00000012953
rosa_multiflora Rmu_co8485327.1_g000002
rosa_roxburghii Rroxscaffold_7G00186940
rosa_rugosa Rorug06G0142300
rosa_samantha Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana Rw6G022120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 820
AciI CCGC 4 cut(s) 215, 287, 793, 820
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 3 cut(s) 242, 315, 404
AcuI CTGAAG 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 2 cut(s) 453, 734
AfiI CCNNNNNNNGG 5 cut(s) 75, 268, 293, 435, 661
AgsI TTSAA 7 cut(s) 88, 132, 380, 523, 647, 805, 838
AjiI CACGTC 1 cut(s) 595
AjuI GAANNNNNNNTTGG 3 cut(s) 426, 458, 896
AluBI AGCT 7 cut(s) 115, 172, 280, 369, 388, 832, 861
AluI AGCT 7 cut(s) 115, 172, 280, 369, 388, 832, 861
Alw26I GTCTC 4 cut(s) 44, 585, 604, 748
AlwI GGATC 1 cut(s) 57
AoxI GGCC 3 cut(s) 421, 532, 652
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 3 cut(s) 242, 315, 404
AseI ATTAAT 1 cut(s) 762
AspLEI GCGC 2 cut(s) 52, 504
AsuII TTCGAA 1 cut(s) 621
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 654
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 222, 542
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 644
BceAI ACGGC 1 cut(s) 678
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 4 cut(s) 44, 585, 604, 748
BfmI CTRYAG 2 cut(s) 370, 507
BisI GCNGC 2 cut(s) 116, 821
BlsI GCNGC 2 cut(s) 117, 822
BmcAI AGTACT 1 cut(s) 453
BmgBI CACGTC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 711
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 222, 542
BpmI CTGGAG 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 883
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 356, 796
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 268, 293, 435, 661
Bse1I ACTGG 2 cut(s) 315, 459
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 356, 796
BseGI GGATG 2 cut(s) 444, 702
BseLI CCNNNNNNNGG 5 cut(s) 75, 268, 293, 435, 661
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 2 cut(s) 315, 459
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 3 cut(s) 423, 534, 654
BshNI GGYRCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 5 cut(s) 75, 268, 293, 435, 661
BsmAI GTCTC 4 cut(s) 44, 585, 604, 748
BsmBI CGTCTC 2 cut(s) 585, 748
BsmFI GGGAC 1 cut(s) 244
BsmI GAATGC 4 cut(s) 11, 52, 99, 687
BsnI GGCC 3 cut(s) 423, 534, 654
Bso31I GGTCTC 1 cut(s) 604
Bsp119I TTCGAA 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 62, 693
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 4 cut(s) 215, 287, 793, 820
BspANI GGCC 3 cut(s) 423, 534, 654
BspCNI CTCAG 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 820
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 315, 459
BssECI CCNNGG 2 cut(s) 356, 796
BssMI GATC 2 cut(s) 62, 693
BssT1I CCWWGG 1 cut(s) 796
Bst4CI ACNGT 4 cut(s) 184, 266, 559, 881
Bst6I CTCTTC 2 cut(s) 83, 267
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 2 cut(s) 444, 702
BstHHI GCGC 2 cut(s) 52, 504
BstKTI GATC 2 cut(s) 65, 696
BstMAI GTCTC 4 cut(s) 44, 585, 604, 748
BstMBI GATC 2 cut(s) 62, 693
BstMWI GCNNNNNNNGC 2 cut(s) 286, 829
BstSFI CTRYAG 2 cut(s) 370, 507
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 2 cut(s) 222, 542
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 3 cut(s) 423, 534, 654
BtgI CCRYGG 1 cut(s) 796
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 2 cut(s) 444, 702
BtsIMutI CAGTG 3 cut(s) 271, 308, 564
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 52, 504
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 452, 733
CviAII CATG 4 cut(s) 164, 218, 475, 797
CviQI GTAC 2 cut(s) 452, 733
DdeI CTNAG 1 cut(s) 608
DpnI GATC 2 cut(s) 64, 695
DpnII GATC 2 cut(s) 62, 693
DraI TTTAAA 1 cut(s) 630
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 83, 267
EarI CTCTTC 2 cut(s) 83, 267
EciI GGCGGA 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 796
Eco147I AGGCCT 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 796
Esp3I CGTCTC 2 cut(s) 585, 748
FaeI CATG 4 cut(s) 167, 221, 478, 800
FaiI YATR 7 cut(s) 22, 165, 219, 476, 483, 586, 798
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 264, 296
FaqI GGGAC 1 cut(s) 244
FatI CATG 4 cut(s) 163, 217, 474, 796
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 2 cut(s) 116, 821
FokI GGATG 2 cut(s) 451, 689
Fsp4HI GCNGC 2 cut(s) 116, 821
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 2 cut(s) 51, 503
GluI GCNGC 2 cut(s) 116, 821
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 3 cut(s) 423, 534, 654
HgaI GACGC 1 cut(s) 216
HhaI GCGC 2 cut(s) 52, 504
Hin1II CATG 4 cut(s) 167, 221, 478, 800
Hin6I GCGC 2 cut(s) 50, 502
HinP1I GCGC 2 cut(s) 50, 502
HindIII AAGCTT 3 cut(s) 170, 278, 830
HinfI GANTC 4 cut(s) 37, 463, 604, 726
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 6 cut(s) 70, 357, 394, 555, 609, 693
Hpy188III TCNNGA 6 cut(s) 16, 43, 104, 429, 575, 782
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 4 cut(s) 184, 266, 559, 881
HpyCH4IV ACGT 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 829
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 4 cut(s) 167, 221, 478, 800
HspAI GCGC 2 cut(s) 50, 502
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 2 cut(s) 62, 693
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 711
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 898
MalI GATC 2 cut(s) 64, 695
MbiI CCGCTC 1 cut(s) 820
MboI GATC 2 cut(s) 62, 693
MboII GAAGA 7 cut(s) 100, 222, 284, 542, 659, 781, 817
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 7 cut(s) 73, 242, 315, 396, 404, 616, 759
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 76, 298, 351, 545, 736
Mox20I TGGCCA 1 cut(s) 654
MscI TGGCCA 1 cut(s) 654
MseI TTAA 2 cut(s) 629, 762
Msp20I TGGCCA 1 cut(s) 654
Mva1269I GAATGC 4 cut(s) 11, 52, 99, 687
MwoI GCNNNNNNNGC 2 cut(s) 286, 829
NcoI CCATGG 1 cut(s) 796
NdeII GATC 2 cut(s) 62, 693
NlaIII CATG 4 cut(s) 167, 221, 478, 800
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 747
NsbI TGCGCA 1 cut(s) 51
NspV TTCGAA 1 cut(s) 621
PceI AGGCCT 1 cut(s) 534
PctI GAATGC 4 cut(s) 11, 52, 99, 687
PfeI GAWTC 3 cut(s) 463, 604, 726
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 117, 822
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 2 cut(s) 453, 734
RsaNI GTAC 2 cut(s) 452, 733
SaqAI TTAA 2 cut(s) 629, 762
SatI GCNGC 2 cut(s) 116, 821
Sau3AI GATC 2 cut(s) 62, 693
ScaI AGTACT 1 cut(s) 453
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 2 cut(s) 370, 507
SfuI TTCGAA 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 7 cut(s) 73, 242, 315, 396, 404, 616, 759
SseBI AGGCCT 1 cut(s) 534
SsiI CCGC 4 cut(s) 215, 287, 793, 820
SspI AATATT 1 cut(s) 626
StuI AGGCCT 1 cut(s) 534
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 4 cut(s) 184, 266, 559, 881
TaiI ACGT 1 cut(s) 597
TaqI TCGA 1 cut(s) 621
TasI AATT 7 cut(s) 73, 242, 315, 396, 404, 616, 759
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 3 cut(s) 463, 604, 726
Tru1I TTAA 2 cut(s) 629, 762
Tru9I TTAA 2 cut(s) 629, 762
TscAI CASTG 3 cut(s) 271, 315, 564
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 234, 581, 780
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 3 cut(s) 271, 315, 564
Van91I CCANNNNNTGG 1 cut(s) 268
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 3 cut(s) 242, 315, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.