Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485327.1

Orthogroup ID

OG0011480

Physical Location & Seq

Genomic Coordinates Reverse (-)

1306 .. 2295

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485327.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggaaactagcaccactcagaatggtagtagtagtatcatgtggttcttcagggataaagggtttgatgataagagtattagtgaaatgttcaaaaaatgcaagcgtcttgagaatgtgaatagggaaagtgcctctgagaattgggcttatctggcaagtattggaattcaagagaggaagctaccttctgttgtgtcgaagtgccccaagatacttactttaggtctccatgagaagcttgtacctacggtcgagtgcctcaccacgcttggcacaaaaccgcgtgaagttgcgtccgccattgccaaattccctcacattctgtcgcatagtgtggaagagaagctctgtccactgttggctttctttgaggcattgggtgttcctcagaagcaacttggcaaaatgattttgctgaatcctaggctcatcagttacagcattgaaacaaagctgaaggacattgtggactttcttgctgatcttggccttgccagagatgggatgattggcaaagtactggtgaagaacccatttatcatgggttatagtgttgataaaagactgcggcctactgcagagtttttgaaatcctttggtctcacagagcagggtattcagacagtggcaatacactttccagaagttctgtgtagggatgtggacaagattttgagacccaatttcaattttttgaaaagatctggatttgaagataggcagatagcagctctggtgactggttatccacccattttgatcaaaagcatccacaattctttagaacccagaatcaaatttttggtagaggtaatgggaagacgaattgatgaagtcaccgattatcctgacttctttcgccatggtttgaagaaaaaagtggaacggcgacacaaactgttgaaacagacgacgactgattgcagcttaagtgaaatgctggactgcaatcaaaagaagttcctattgaagtttggtttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

329

Amino Acids

37.41

Weight (kDa)

9.37

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca	FvH4_2g17170
malus_domestica	MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica	Prupe.8G183100_v2.0.a1
pyrus_communis	pycom05g14020 pycom10g12450
rosa_chinensis	RchiOBHm_Chr6g0281661
rosa_laevigata	RLG00000012953
rosa_multiflora	Rmu_co8485327.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186940
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana	Rw6G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	286
AciI	CCGC	3 cut(s)	284, 300, 571
AcsI	RAATTY	3 cut(s)	168, 311, 800
AcuI	CTGAAG	2 cut(s)	34, 479
AfaI	GTAC	2 cut(s)	246, 522
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflII	CTTAAG	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	1 cut(s)	965
AluBI	AGCT	6 cut(s)	184, 241, 349, 457, 734, 930
AluI	AGCT	6 cut(s)	184, 241, 349, 457, 734, 930
Alw26I	GTCTC	3 cut(s)	233, 608, 673
AoxI	GGCC	2 cut(s)	490, 572
ApeKI	GCWGC	2 cut(s)	731, 927
ApoI	RAATTY	3 cut(s)	168, 311, 800
AspA2I	CCTAGG	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	256, 538, 751, 832
AvrII	CCTAGG	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	829
BbvI	GCAGC	2 cut(s)	743, 939
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	905
BclI	TGATCA	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	233, 608, 673
BfaI	CTAG	2 cut(s)	9, 426
BfmI	CTRYAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	931
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	3 cut(s)	572, 732, 928
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	3 cut(s)	573, 733, 929
BmcAI	AGTACT	1 cut(s)	522
BmsI	GCATC	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	829
BpuEI	CTTGAG	1 cut(s)	131
BsaI	GGTCTC	3 cut(s)	233, 608, 673
BsaJI	CCNNGG	2 cut(s)	425, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	528, 748
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	425, 865
BseGI	GGATG	3 cut(s)	513, 667, 771
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	32, 129, 404
BseNI	ACTGG	2 cut(s)	528, 748
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	743, 939
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	492, 574
BsiEI	CGRYCG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	233, 608, 673
BsnI	GGCC	2 cut(s)	492, 574
Bso31I	GGTCTC	3 cut(s)	233, 608, 673
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	484, 704, 762
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	3 cut(s)	284, 300, 571
BspANI	GGCC	2 cut(s)	492, 574
BspCNI	CTCAG	3 cut(s)	31, 130, 403
BspFNI	CGCG	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	931
BspTNI	GGTCTC	3 cut(s)	233, 608, 673
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	528, 748
BssECI	CCNNGG	2 cut(s)	425, 865
BssMI	GATC	3 cut(s)	484, 704, 762
BssT1I	CCWWGG	2 cut(s)	425, 865
Bst4CI	ACNGT	4 cut(s)	253, 360, 628, 903
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	931
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	18, 138, 390
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	3 cut(s)	513, 667, 771
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	487, 707, 765
BstMAI	GTCTC	3 cut(s)	233, 608, 673
BstMBI	GATC	3 cut(s)	484, 704, 762
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	743, 939
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	492, 574
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	3 cut(s)	513, 667, 771
BtsIMutI	CAGTG	2 cut(s)	356, 633
Cac8I	GCNNGC	1 cut(s)	104
CseI	GACGC	2 cut(s)	95, 285
Csp6I	GTAC	2 cut(s)	245, 521
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	4 cut(s)	40, 233, 544, 866
CviQI	GTAC	2 cut(s)	245, 521
DdeI	CTNAG	3 cut(s)	18, 138, 390
DpnI	GATC	3 cut(s)	486, 706, 764
DpnII	GATC	3 cut(s)	484, 704, 762
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	425, 865
Eco31I	GGTCTC	3 cut(s)	233, 608, 673
Eco57I	CTGAAG	2 cut(s)	34, 479
EcoRI	GAATTC	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	425, 865
ErhI	CCWWGG	2 cut(s)	425, 865
FaeI	CATG	4 cut(s)	43, 236, 547, 869
FaiI	YATR	6 cut(s)	41, 234, 333, 545, 552, 867
FatI	CATG	4 cut(s)	39, 232, 543, 865
FbaI	TGATCA	1 cut(s)	762
Fnu4HI	GCNGC	3 cut(s)	572, 732, 928
FokI	GGATG	3 cut(s)	520, 674, 758
Fsp4HI	GCNGC	3 cut(s)	572, 732, 928
FspBI	CTAG	2 cut(s)	9, 426
GluI	GCNGC	3 cut(s)	572, 732, 928
HaeIII	GGCC	2 cut(s)	492, 574
HgaI	GACGC	2 cut(s)	95, 285
Hin1II	CATG	4 cut(s)	43, 236, 547, 869
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	421, 795
HphI	GGTGA	4 cut(s)	256, 538, 751, 832
Hpy166II	GTNNAC	3 cut(s)	356, 472, 667
Hpy188I	TCNGA	4 cut(s)	21, 139, 393, 624
Hpy188III	TCNNGA	5 cut(s)	110, 173, 644, 708, 851
Hpy8I	GTNNAC	3 cut(s)	356, 472, 667
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	2 cut(s)	198, 454
HpyCH4III	ACNGT	4 cut(s)	253, 360, 628, 903
HpyCH4V	TGCA	4 cut(s)	102, 581, 927, 951
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	18, 138, 390
Hsp92II	CATG	4 cut(s)	43, 236, 547, 869
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	3 cut(s)	484, 704, 762
Lsp1109I	GCAGC	2 cut(s)	743, 939
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	2 cut(s)	9, 426
MaeIII	GTNAC	3 cut(s)	437, 739, 838
MalI	GATC	3 cut(s)	486, 706, 764
MboI	GATC	3 cut(s)	484, 704, 762
MboII	GAAGA	6 cut(s)	40, 353, 541, 728, 834, 886
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	8 cut(s)	142, 168, 311, 685, 691, 778, 800, 828
MnlI	CCTC	7 cut(s)	145, 171, 272, 327, 367, 399, 805
MseI	TTAA	1 cut(s)	932
MspCI	CTTAAG	1 cut(s)	931
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	3 cut(s)	484, 704, 762
NlaIII	CATG	4 cut(s)	43, 236, 547, 869
NmuCI	GTSAC	2 cut(s)	739, 838
PfeI	GAWTC	2 cut(s)	421, 795
PkrI	GCNGC	3 cut(s)	573, 733, 929
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	704
RsaI	GTAC	2 cut(s)	246, 522
RsaNI	GTAC	2 cut(s)	245, 521
SaqAI	TTAA	1 cut(s)	932
SatI	GCNGC	3 cut(s)	572, 732, 928
Sau3AI	GATC	3 cut(s)	484, 704, 762
ScaI	AGTACT	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	780
SfcI	CTRYAG	1 cut(s)	579
SmlI	CTYRAG	2 cut(s)	110, 931
SmoI	CTYRAG	2 cut(s)	110, 931
Sse9I	AATT	8 cut(s)	142, 168, 311, 685, 691, 778, 800, 828
SsiI	CCGC	3 cut(s)	284, 300, 571
SspMI	CTAG	2 cut(s)	9, 426
StyI	CCWWGG	2 cut(s)	425, 865
TaaI	ACNGT	4 cut(s)	253, 360, 628, 903
TaqI	TCGA	2 cut(s)	200, 255
TasI	AATT	8 cut(s)	142, 168, 311, 685, 691, 778, 800, 828
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	421, 795
Tru1I	TTAA	1 cut(s)	932
Tru9I	TTAA	1 cut(s)	932
TscAI	CASTG	2 cut(s)	363, 633
TseFI	GTSAC	2 cut(s)	739, 838
TseI	GCWGC	2 cut(s)	731, 927
Tsp45I	GTSAC	2 cut(s)	739, 838
TspDTI	ATGAA	1 cut(s)	849
TspRI	CASTG	2 cut(s)	363, 633
Vha464I	CTTAAG	1 cut(s)	931
XapI	RAATTY	3 cut(s)	168, 311, 800
XmaJI	CCTAGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	9, 426
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.