Rroxscaffold_7G00186940
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011480
Physical Location & Seq
Forward (+)
26281881 .. 26283636
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186940.1

Sequence Viewer

Length: 945 bp
ATGGCCAATAGGGTTGGAAATTGTGGAGAAGATGGGGTAATGGAAACTAGCACCACTCAGAATGGTAGTAGTAGTATCATGTGGTTCTTCAGGGATAAAGGGTTTGATGATAAGAGTATTAGTGAAATGCTAAAAAAATGCAAGCGGCTTGAGAATGTGAATAGGGAAAGTGCCTCTGAGAATTGGGCTTATCTGGCAAGTATTGGAATTCAAGAGAGGAAGCTACCTTCTGTTGTGTCGAAGTGTCCCAAGATACTTACTTTAGGTCTTCATGAGAAGCTTGTACCTACGGTCGAGTGCCTGACCACGCTTGGCACAAAACCGCGTGAAGTTGCATCCGCCATTGCCAAATTCCCTCACATTCTGTCGCATAGTGTGGAAGAGAAGCTCTGTCCACTGTTGGCTTTCTTTGAGGCATTGGGTGTTCCTCAGAAGCAACTTGGCAAAATGATTTTGCTGAATCCTAGGCTCATCAGTTACAGCATTGAAACAAAGCTGAAGGACATTGTGGACTTTCTTGCTGATCTTGGCCTTGCTAGAGATGGGATGATTGGCAAAGTACTGGTGAAGAACCCATTTATCATGGGTTATAGTGTTGATAAAAGACTGCGGCCTACTGCAGAGTTTTTGAAATCCTTTGGTCTCACAGAGCAGGGTATTCAGACAGTGGCAATACACTTTCCAGAAGTTCTGTGTAGGGATGTGGACAAGATTTTGAGACCCAATTTCAATTTTTTGAAAAGATCTGGATTTGAAGATAGGCAGATAGCAGCTCTGGTGACTGGTTATCCACCCATTTTGATCAAAAGCATCCACAATTCTTTAGAACCCAGAATCAAATTTTTGGTAGAGGTAATGGGAAGACGAATTGATGAAGTCACCGATTATCCTGACTTCTTTCGCCATGGTTTGAAGAAAAAGTGGAACGGCGACACAAACTGTTGA

Protein Analysis

314

Amino Acids

35.39

Weight (kDa)

9.06

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 29 - 307 4.8e-50 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca FvH4_2g17170
malus_domestica MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica Prupe.8G183100_v2.0.a1
pyrus_communis pycom05g14020 pycom10g12450
rosa_chinensis RchiOBHm_Chr6g0281661
rosa_laevigata RLG00000012953
rosa_multiflora Rmu_co8485327.1_g000002
rosa_roxburghii Rroxscaffold_7G00186940
rosa_rugosa Rorug06G0142300
rosa_samantha Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana Rw6G022120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 325
AciI CCGC 4 cut(s) 145, 323, 339, 610
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 207, 350, 839
AcuI CTGAAG 2 cut(s) 73, 518
AfaI GTAC 2 cut(s) 285, 561
AgsI TTSAA 7 cut(s) 212, 488, 631, 730, 739, 755, 913
AluBI AGCT 5 cut(s) 223, 280, 388, 496, 773
AluI AGCT 5 cut(s) 223, 280, 388, 496, 773
Alw26I GTCTC 2 cut(s) 647, 712
AoxI GGCC 3 cut(s) 3, 529, 611
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 3 cut(s) 207, 350, 839
AspA2I CCTAGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 577, 790, 871
AvrII CCTAGG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 260, 868
BbvI GCAGC 1 cut(s) 782
BccI CCATC 2 cut(s) 26, 536
BceAI ACGGC 1 cut(s) 943
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 647, 712
BfaI CTAG 3 cut(s) 48, 465, 537
BfmI CTRYAG 1 cut(s) 618
BglII AGATCT 1 cut(s) 743
BisI GCNGC 3 cut(s) 146, 611, 771
BlnI CCTAGG 1 cut(s) 464
BlsI GCNGC 3 cut(s) 147, 612, 772
BmcAI AGTACT 1 cut(s) 561
BmsI GCATC 2 cut(s) 344, 819
BpiI GAAGAC 2 cut(s) 260, 868
BpuEI CTTGAG 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 647, 712
BsaJI CCNNGG 2 cut(s) 464, 904
Bse1I ACTGG 2 cut(s) 567, 787
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 464, 904
BseGI GGATG 4 cut(s) 335, 552, 706, 810
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 71, 168, 443
BseNI ACTGG 2 cut(s) 567, 787
BseXI GCAGC 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 3 cut(s) 5, 531, 613
BsiEI CGRYCG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 647, 712
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 5, 531, 613
Bso31I GGTCTC 2 cut(s) 647, 712
Bsp143I GATC 3 cut(s) 523, 743, 801
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 4 cut(s) 145, 323, 339, 610
BspANI GGCC 3 cut(s) 5, 531, 613
BspCNI CTCAG 3 cut(s) 70, 169, 442
BspFNI CGCG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 622
BspTNI GGTCTC 2 cut(s) 647, 712
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 567, 787
BssECI CCNNGG 2 cut(s) 464, 904
BssMI GATC 3 cut(s) 523, 743, 801
BssT1I CCWWGG 2 cut(s) 464, 904
Bst4CI ACNGT 4 cut(s) 292, 399, 667, 941
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 57, 177, 429
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 4 cut(s) 335, 552, 706, 810
BstFNI CGCG 1 cut(s) 325
BstKTI GATC 3 cut(s) 526, 746, 804
BstMAI GTCTC 2 cut(s) 647, 712
BstMBI GATC 3 cut(s) 523, 743, 801
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 782
BstV2I GAAGAC 2 cut(s) 260, 868
BstX2I RGATCY 1 cut(s) 743
BstYI RGATCY 1 cut(s) 743
BsuRI GGCC 3 cut(s) 5, 531, 613
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 4 cut(s) 335, 552, 706, 810
BtsIMutI CAGTG 2 cut(s) 395, 672
Cac8I GCNNGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 271
Csp6I GTAC 2 cut(s) 284, 560
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 4 cut(s) 79, 272, 583, 905
CviQI GTAC 2 cut(s) 284, 560
DdeI CTNAG 3 cut(s) 57, 177, 429
DpnI GATC 3 cut(s) 525, 745, 803
DpnII GATC 3 cut(s) 523, 743, 801
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 464, 904
Eco31I GGTCTC 2 cut(s) 647, 712
Eco57I CTGAAG 2 cut(s) 73, 518
EcoRI GAATTC 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 464, 904
ErhI CCWWGG 2 cut(s) 464, 904
FaeI CATG 4 cut(s) 82, 275, 586, 908
FaiI YATR 6 cut(s) 80, 273, 372, 584, 591, 906
FaqI GGGAC 1 cut(s) 231
FatI CATG 4 cut(s) 78, 271, 582, 904
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 3 cut(s) 146, 611, 771
FokI GGATG 4 cut(s) 322, 559, 713, 797
Fsp4HI GCNGC 3 cut(s) 146, 611, 771
FspBI CTAG 3 cut(s) 48, 465, 537
GluI GCNGC 3 cut(s) 146, 611, 771
HaeIII GGCC 3 cut(s) 5, 531, 613
Hin1II CATG 4 cut(s) 82, 275, 586, 908
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 460, 834
HphI GGTGA 3 cut(s) 577, 790, 871
Hpy166II GTNNAC 3 cut(s) 395, 511, 706
Hpy188I TCNGA 4 cut(s) 60, 178, 432, 663
Hpy188III TCNNGA 5 cut(s) 212, 272, 683, 747, 890
Hpy8I GTNNAC 3 cut(s) 395, 511, 706
HpyAV CCTTC 2 cut(s) 237, 493
HpyCH4III ACNGT 4 cut(s) 292, 399, 667, 941
HpyCH4V TGCA 3 cut(s) 141, 335, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 3 cut(s) 57, 177, 429
Hsp92II CATG 4 cut(s) 82, 275, 586, 908
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 3 cut(s) 523, 743, 801
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 2 cut(s) 344, 819
MaeI CTAG 3 cut(s) 48, 465, 537
MaeIII GTNAC 3 cut(s) 476, 778, 877
MalI GATC 3 cut(s) 525, 745, 803
MboI GATC 3 cut(s) 523, 743, 801
MboII GAAGA 8 cut(s) 41, 79, 260, 392, 580, 767, 873, 925
MflI RGATCY 1 cut(s) 743
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 19, 181, 207, 350, 724, 730, 817, 839, 867
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 184, 210, 366, 406, 438, 844
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 904
NdeII GATC 3 cut(s) 523, 743, 801
NlaIII CATG 4 cut(s) 82, 275, 586, 908
NmuCI GTSAC 2 cut(s) 778, 877
PagI TCATGA 1 cut(s) 271
PfeI GAWTC 2 cut(s) 460, 834
PkrI GCNGC 3 cut(s) 147, 612, 772
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 743
RsaI GTAC 2 cut(s) 285, 561
RsaNI GTAC 2 cut(s) 284, 560
SatI GCNGC 3 cut(s) 146, 611, 771
Sau3AI GATC 3 cut(s) 523, 743, 801
ScaI AGTACT 1 cut(s) 561
SetI ASST 9 cut(s) 225, 229, 268, 282, 289, 390, 498, 775, 855
SfaNI GCATC 2 cut(s) 344, 819
SfcI CTRYAG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 9 cut(s) 19, 181, 207, 350, 724, 730, 817, 839, 867
SsiI CCGC 4 cut(s) 145, 323, 339, 610
SspMI CTAG 3 cut(s) 48, 465, 537
StyI CCWWGG 2 cut(s) 464, 904
TaaI ACNGT 4 cut(s) 292, 399, 667, 941
TaqI TCGA 2 cut(s) 239, 294
TasI AATT 9 cut(s) 19, 181, 207, 350, 724, 730, 817, 839, 867
TatI WGTACW 1 cut(s) 559
TauI GCSGC 2 cut(s) 148, 613
TfiI GAWTC 2 cut(s) 460, 834
TscAI CASTG 2 cut(s) 402, 672
TseFI GTSAC 2 cut(s) 778, 877
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 778, 877
TspDTI ATGAA 2 cut(s) 260, 888
TspRI CASTG 2 cut(s) 402, 672
XapI RAATTY 3 cut(s) 207, 350, 839
XmaJI CCTAGG 1 cut(s) 464
XspI CTAG 3 cut(s) 48, 465, 537
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.