pycom05g14020
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011480
Physical Location & Seq
Reverse (-)
17526656 .. 17527114
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14020.1

Sequence Viewer

Length: 459 bp
ATGGAAACCAGGACTACCCAAAATGGTAGTTCTGGTATCATGTGGTTCTTCCGGGATAAAGGTTTTGATGATAAGAGCATTCAGGATATGCTCAAAAAGTGCAAGCGTCTCGAGAATGCGCAAGCAGAAAGAGCCTCCGAGAATTGGGCTTATTTGAAGAGTATTGGCATTCAGGAGAGAAAACTGCCTTTTGTTGTTTCGAAGTGCCCCAAGATACTTACTTTGGCTCTCCACGAGAAGCTCATTCCTACGGTTGAGTGCCTTACCACGCTTGGTACCAAACCGCGTGAAGTTGCGTCTGCCATTGCCAAATTCCCACACATTCCGTCCCACAGTGCGGAAGAGAAGCTTTGTCTGCTTTTGGGCTTCTTTGAGGCACTGGGAATTCCTCCAAAGCAACTTGGAAAAATGATTTTGCTCAATCCAAGGCTCATCGGGTACAACATTGAAGCTGTGTGA

Protein Analysis

153

Amino Acids

17.1

Weight (kDa)

9.23

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 15 - 150 5.4e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38160 AT4G38160 AT4G38160 AT4G38160
fragaria_vesca FvH4_2g17170
malus_domestica MD05G1145000.v1.1 MD10G1144800.v1.1
prunus_persica Prupe.8G183100_v2.0.a1
pyrus_communis pycom05g14020 pycom10g12450
rosa_chinensis RchiOBHm_Chr6g0281661
rosa_laevigata RLG00000012953
rosa_multiflora Rmu_co8485327.1_g000002
rosa_roxburghii Rroxscaffold_7G00186940
rosa_rugosa Rorug06G0142300
rosa_samantha Rh6AG254900 Rh6BG258200 Rh6CG257000 Rh6DG249100
rosa_wichuraiana Rw6G022120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 1 cut(s) 286
AciI CCGC 2 cut(s) 284, 338
AcsI RAATTY 2 cut(s) 311, 384
AfaI GTAC 2 cut(s) 277, 440
AfiI CCNNNNNNNGG 2 cut(s) 144, 337
AgsI TTSAA 2 cut(s) 157, 449
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 3 cut(s) 241, 349, 452
AluI AGCT 3 cut(s) 241, 349, 452
Alw26I GTCTC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 110
ApoI RAATTY 2 cut(s) 311, 384
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 10
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 10, 53
BmeT110I CYCGRG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 10, 53
BmrI ACTGGG 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 337
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 144, 337
BseMI GCAATG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 144, 337
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 3 cut(s) 78, 121, 168
BsoBI CYCGRG 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 209
BspACI CCGC 2 cut(s) 284, 338
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 425
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 253, 335
Bst6I CTCTTC 2 cut(s) 152, 336
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 104, 123
BstFNI CGCG 1 cut(s) 286
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 131, 355
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 8, 51
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 340, 377
Cac8I GCNNGC 2 cut(s) 104, 123
CfoI GCGC 1 cut(s) 121
CseI GACGC 2 cut(s) 95, 285
Csp6I GTAC 2 cut(s) 276, 439
CviAII CATG 1 cut(s) 40
CviJI RGCY 8 cut(s) 134, 149, 227, 241, 349, 366, 430, 452
CviKI_1 RGCY 8 cut(s) 134, 149, 227, 241, 349, 366, 430, 452
CviQI GTAC 2 cut(s) 276, 439
Eam1104I CTCTTC 2 cut(s) 152, 336
EarI CTCTTC 2 cut(s) 152, 336
Eco130I CCWWGG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 1 cut(s) 43
FaiI YATR 2 cut(s) 41, 89
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 313
FatI CATG 1 cut(s) 39
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
HapII CCGG 1 cut(s) 52
HgaI GACGC 2 cut(s) 95, 285
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 347
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 83, 110, 112, 173
HpyCH4III ACNGT 2 cut(s) 253, 335
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 355
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 18, 22, 65, 68, 158, 365
MboII GAAGA 3 cut(s) 40, 169, 353
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 142, 311, 384
MnlI CCTC 3 cut(s) 145, 367, 399
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 10, 53
Mva1269I GAATGC 3 cut(s) 78, 121, 168
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 131, 355
NciI CCSGG 1 cut(s) 53
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 277
NsbI TGCGCA 1 cut(s) 120
NspV TTCGAA 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 110
PctI GAATGC 3 cut(s) 78, 121, 168
PfoI TCCNGGA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 2 cut(s) 277, 440
RsaNI GTAC 2 cut(s) 276, 439
ScrFI CCNGG 2 cut(s) 10, 53
SduI GDGCHC 1 cut(s) 209
SetI ASST 4 cut(s) 64, 243, 351, 454
Sfr274I CTCGAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 142, 311, 384
SsiI CCGC 2 cut(s) 284, 338
StyD4I CCNGG 2 cut(s) 8, 51
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 253, 335
TaqI TCGA 2 cut(s) 111, 200
TasI AATT 3 cut(s) 142, 311, 384
TscAI CASTG 2 cut(s) 340, 384
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 340, 384
XapI RAATTY 2 cut(s) 311, 384
XhoI CTCGAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.